Rmu_sc0000028.1_g000011

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000028.1
Physical Location & Seq
Reverse (-)
62894 .. 64450
1557 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000028.1_g000011.1.cds

Sequence Viewer

Length: 1557 bp
atggcactggcaatcccaccaaatcatcgtcatcatcgtctccctgttacagtcaacaccaatgatggagactctcagtcccccagccaccacagccgtcttctccacttgttgaatgaatgtacggacatgtctcagctgaaacaaatacacgcacacacactgcgcaccacatccaccacaaacccacacaccctctttctccacagccgaatcctccacttctcatccttaaccgatatccgctacgcctttcgggttttcaatcagattgagagtcccaactctttcacctggaacacgctcatcaggggttgtgctcgaagctctgggctcgaaacccaggctatactactctactatgaaatgttatcacaaggagttgctctgccggatcagtatacctttccctttgttctcagagcttgtgcttacttgtttgccttatcggaaggaaaacaagcgcatgctcatgttgtcaaacttgggtttggttccgacgtttatattggcaatagtctgattcatctgtatgcttcttgtgggtgtttggattacgcacggaaggtgtttgagaaaatgcgtgagagaagccttgtgtcgtggaatgttatgattgattctttggttggggctggcgagtttgagagttcgctggaagtgtttggtcagatgcagaggctgtttgagcctgatgggtatacaatgcagagtgttataaatgcttgtgctggtttgggggctttggatttgggaatgtgggctcatgcttatgtgttgaagaagtgtgataatgctgtagccagcaatgtgttggtgaactcttcgttggttgatatgtattacaaatgtgggtccttggatatggctctccaagtgttcgagggaatgccgaaacgtgatgtgattacatggaattatatgattctgggatttgccatgcatggaaaagctgaggcagccttaaagtgttttgatcgtatggttaatatggagagttgtaagccgaattccatcacattcgttggtgttttgagtgcatgcaatcacagaggcatggttaacgaaggtcgtaagttctttgatgtgatggtaaaggagtacaagattgaaccgcgattagagcactatgggtgcctagttgatcttcttgcacgtgctggtttcattgacgaagctttgaatttggtgacaacaatgcccatgaagcctgatgccgtaatatggaggagtcttcttgatgcttgcagtaagcaacagcatgccagtattgagctaagtgaagaagtggccaggcatatccttgaatctggaggagaggatgtttctagtggtgtttatgtgctattgtcaagagtgtatgcttcagctagccgctggaatgacgtcggatcaattcggaaattgatgacagaggagggtatagccaaagagcctggctgtagtttaatagacatagatggtattacgcatgaattctttgccggagacacatctcatcctcatagtagagaaatatatcatgtcttggatgcgatgaaggaaagactcaaatag

Protein Analysis

518

Amino Acids

58.02

Weight (kDa)

6.31

Isoelectric Point (pI)

47.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 719
AatII GACGTC 1 cut(s) 1389
Acc16I TGCGCA 1 cut(s) 167
AccB1I GGYRCC 1 cut(s) 1134
AccI GTMKAC 2 cut(s) 401, 701
AccII CGCG 1 cut(s) 1117
AciI CCGC 3 cut(s) 244, 1115, 1375
AclWI GGATC 2 cut(s) 402, 1399
AcoI YGGCCR 1 cut(s) 1290
AcsI RAATTY 3 cut(s) 1009, 1183, 1475
AcuI CTGAAG 1 cut(s) 1350
AcvI CACGTG 1 cut(s) 1157
AcyI GRCGYC 1 cut(s) 1386
AfaI GTAC 2 cut(s) 124, 1103
AfiI CCNNNNNNNGG 1 cut(s) 1224
AflIII ACRYGT 1 cut(s) 129
AgsI TTSAA 6 cut(s) 115, 265, 781, 1112, 1183, 1307
AhdI GACNNNNNGTC 1 cut(s) 76
AjnI CCWGG 4 cut(s) 293, 342, 1292, 1435
AjuI GAANNNNNNNTTGG 2 cut(s) 812, 844
AluBI AGCT 7 cut(s) 139, 327, 425, 953, 1178, 1276, 1370
AluI AGCT 7 cut(s) 139, 327, 425, 953, 1178, 1276, 1370
Alw21I GWGCWC 2 cut(s) 322, 1128
Alw26I GTCTC 4 cut(s) 44, 63, 138, 1482
AlwI GGATC 2 cut(s) 402, 1399
AlwNI CAGNNNCTG 1 cut(s) 682
AoxI GGCC 1 cut(s) 1290
ApeKI GCWGC 1 cut(s) 959
ApoI RAATTY 3 cut(s) 1009, 1183, 1475
AspLEI GCGC 2 cut(s) 168, 466
AspS9I GGNCC 1 cut(s) 855
AsuHPI GGTGA 3 cut(s) 283, 829, 1201
AsuNHI GCTAGC 1 cut(s) 1370
AvaII GGWCC 1 cut(s) 855
BalI TGGCCA 1 cut(s) 1292
BanI GGYRCC 1 cut(s) 1134
BanII GRGCYC 2 cut(s) 336, 766
BbrPI CACGTG 1 cut(s) 1157
BbsI GAAGAC 2 cut(s) 92, 1226
Bbv12I GWGCWC 2 cut(s) 322, 1128
BbvCI CCTCAGC 1 cut(s) 954
BbvI GCAGC 1 cut(s) 971
BccI CCATC 5 cut(s) 59, 689, 1022, 1084, 1454
BceAI ACGGC 2 cut(s) 81, 1202
BciT130I CCWGG 4 cut(s) 295, 344, 1294, 1437
BcoDI GTCTC 4 cut(s) 44, 63, 138, 1482
BfaI CTAG 3 cut(s) 1139, 1329, 1371
BfmI CTRYAG 2 cut(s) 798, 1441
BisI GCNGC 2 cut(s) 960, 1375
BlsI GCNGC 2 cut(s) 961, 1376
Bme1390I CCNGG 4 cut(s) 295, 344, 1294, 1437
Bme18I GGWCC 1 cut(s) 855
BmeRI GACNNNNNGTC 1 cut(s) 76
BmgT120I GGNCC 1 cut(s) 855
BmiI GGNNCC 3 cut(s) 496, 856, 1136
BmrFI CCNGG 4 cut(s) 295, 344, 1294, 1437
BmsI GCATC 4 cut(s) 663, 1204, 1231, 1522
BmtI GCTAGC 1 cut(s) 1374
BpiI GAAGAC 2 cut(s) 92, 1226
BpmI CTGGAG 1 cut(s) 1332
Bpu10I CCTNAGC 1 cut(s) 954
BsaAI YACGTR 1 cut(s) 1157
BsaHI GRCGYC 1 cut(s) 1386
BsaJI CCNNGG 2 cut(s) 342, 858
BsaXI ACNNNNNCTCC 2 cut(s) 1308, 1338
Bsc4I CCNNNNNNNGG 1 cut(s) 1224
Bse1I ACTGG 2 cut(s) 12, 1266
Bse3DI GCAATG 1 cut(s) 814
BseBI CCWGG 4 cut(s) 295, 344, 1294, 1437
BseDI CCNNGG 2 cut(s) 342, 858
BseGI GGATG 5 cut(s) 173, 227, 1327, 1498, 1537
BseLI CCNNNNNNNGG 1 cut(s) 1224
BseMI GCAATG 1 cut(s) 814
BseMII CTCAG 4 cut(s) 89, 149, 433, 945
BseNI ACTGG 2 cut(s) 12, 1266
BseRI GAGGAG 3 cut(s) 1243, 1329, 1430
BseXI GCAGC 1 cut(s) 971
BseYI CCCAGC 1 cut(s) 83
Bsh1236I CGCG 1 cut(s) 1117
BshFI GGCC 1 cut(s) 1292
BshNI GGYRCC 1 cut(s) 1134
BsiHKAI GWGCWC 2 cut(s) 322, 1128
BsiSI CCGG 2 cut(s) 392, 1485
BslFI GGGAC 2 cut(s) 64, 264
BslI CCNNNNNNNGG 1 cut(s) 1224
BsmAI GTCTC 4 cut(s) 44, 63, 138, 1482
BsmBI CGTCTC 1 cut(s) 44
BsmFI GGGAC 2 cut(s) 64, 264
BsmI GAATGC 1 cut(s) 894
BsnI GGCC 1 cut(s) 1292
Bsp1286I GDGCHC 4 cut(s) 322, 336, 766, 1128
Bsp143I GATC 4 cut(s) 394, 976, 1144, 1391
BspACI CCGC 3 cut(s) 244, 1115, 1375
BspANI GGCC 1 cut(s) 1292
BspCNI CTCAG 4 cut(s) 88, 148, 432, 946
BspFNI CGCG 1 cut(s) 1117
BspLI GGNNCC 3 cut(s) 496, 856, 1136
BspOI GCTAGC 1 cut(s) 1374
BspPI GGATC 2 cut(s) 402, 1399
BspT107I GGYRCC 1 cut(s) 1134
BsrDI GCAATG 1 cut(s) 814
BsrI ACTGG 2 cut(s) 12, 1266
BssECI CCNNGG 2 cut(s) 342, 858
BssMI GATC 4 cut(s) 394, 976, 1144, 1391
BssNAI GTATAC 2 cut(s) 402, 702
BssNI GRCGYC 1 cut(s) 1386
BssT1I CCWWGG 1 cut(s) 858
Bst1107I GTATAC 2 cut(s) 402, 702
Bst2UI CCWGG 4 cut(s) 295, 344, 1294, 1437
Bst4CI ACNGT 1 cut(s) 52
Bst6I CTCTTC 1 cut(s) 829
BstACI GRCGYC 1 cut(s) 1386
BstBAI YACGTR 1 cut(s) 1157
BstC8I GCNNGC 7 cut(s) 468, 637, 805, 1042, 1246, 1263, 1372
BstDEI CTNAG 5 cut(s) 75, 135, 419, 954, 1277
BstF5I GGATG 5 cut(s) 173, 227, 1327, 1498, 1537
BstFNI CGCG 1 cut(s) 1117
BstHHI GCGC 2 cut(s) 168, 466
BstKTI GATC 4 cut(s) 397, 979, 1147, 1394
BstMAI GTCTC 4 cut(s) 44, 63, 138, 1482
BstMBI GATC 4 cut(s) 394, 976, 1144, 1391
BstMWI GCNNNNNNNGC 5 cut(s) 93, 688, 959, 1123, 1207
BstNI CCWGG 4 cut(s) 295, 344, 1294, 1437
BstNSI RCATGY 4 cut(s) 133, 470, 1044, 1265
BstSCI CCNGG 4 cut(s) 293, 342, 1292, 1435
BstSFI CTRYAG 2 cut(s) 798, 1441
BstUI CGCG 1 cut(s) 1117
BstV1I GCAGC 1 cut(s) 971
BstV2I GAAGAC 2 cut(s) 92, 1226
BstZ17I GTATAC 2 cut(s) 402, 702
BsuRI GGCC 1 cut(s) 1292
BtgZI GCGATG 1 cut(s) 1550
BtsCI GGATG 5 cut(s) 173, 227, 1327, 1498, 1537
BtsI GCAGTG 1 cut(s) 161
BtsIMutI CAGTG 2 cut(s) 5, 161
Cac8I GCNNGC 7 cut(s) 468, 637, 805, 1042, 1246, 1263, 1372
CaiI CAGNNNCTG 1 cut(s) 682
CfoI GCGC 2 cut(s) 168, 466
Cfr13I GGNCC 1 cut(s) 855
Csp6I GTAC 2 cut(s) 123, 1102
CviQI GTAC 2 cut(s) 123, 1102
DdeI CTNAG 5 cut(s) 75, 135, 419, 954, 1277
DpnI GATC 4 cut(s) 396, 978, 1146, 1393
DpnII GATC 4 cut(s) 394, 976, 1144, 1391
DriI GACNNNNNGTC 1 cut(s) 76
EaeI YGGCCR 1 cut(s) 1290
Eam1104I CTCTTC 1 cut(s) 829
Eam1105I GACNNNNNGTC 1 cut(s) 76
EarI CTCTTC 1 cut(s) 829
Eco130I CCWWGG 1 cut(s) 858
Eco24I GRGCYC 2 cut(s) 336, 766
Eco32I GATATC 1 cut(s) 241
Eco47I GGWCC 1 cut(s) 855
Eco57I CTGAAG 1 cut(s) 1350
Eco72I CACGTG 1 cut(s) 1157
EcoO109I RGGNCCY 1 cut(s) 855
EcoRI GAATTC 2 cut(s) 1009, 1475
EcoRII CCWGG 4 cut(s) 293, 342, 1292, 1435
EcoRV GATATC 1 cut(s) 241
EcoT14I CCWWGG 1 cut(s) 858
EcoT22I ATGCAT 1 cut(s) 945
EcoT38I GRGCYC 2 cut(s) 336, 766
ErhI CCWWGG 1 cut(s) 858
Esp3I CGTCTC 1 cut(s) 44
FaqI GGGAC 2 cut(s) 64, 264
FblI GTMKAC 2 cut(s) 401, 701
Fnu4HI GCNGC 2 cut(s) 960, 1375
FokI GGATG 5 cut(s) 160, 214, 1334, 1485, 1544
FriOI GRGCYC 2 cut(s) 336, 766
Fsp4HI GCNGC 2 cut(s) 960, 1375
FspBI CTAG 3 cut(s) 1139, 1329, 1371
FspI TGCGCA 1 cut(s) 167
GlaI GCGC 2 cut(s) 167, 465
GluI GCNGC 2 cut(s) 960, 1375
GsaI CCCAGC 1 cut(s) 87
GsuI CTGGAG 1 cut(s) 1332
HaeIII GGCC 1 cut(s) 1292
HapII CCGG 2 cut(s) 392, 1485
HhaI GCGC 2 cut(s) 168, 466
Hin1I GRCGYC 1 cut(s) 1386
Hin6I GCGC 2 cut(s) 166, 464
HinP1I GCGC 2 cut(s) 166, 464
HincII GTYRAC 2 cut(s) 55, 1063
HindII GTYRAC 2 cut(s) 55, 1063
HindIII AAGCTT 1 cut(s) 1176
HinfI GANTC 9 cut(s) 71, 213, 277, 523, 620, 925, 1231, 1307, 1548
HpaI GTTAAC 1 cut(s) 1063
HpaII CCGG 2 cut(s) 392, 1485
HphI GGTGA 3 cut(s) 283, 829, 1201
Hpy166II GTNNAC 5 cut(s) 55, 402, 702, 820, 1063
Hpy188I TCNGA 8 cut(s) 270, 422, 451, 499, 522, 672, 1391, 1401
Hpy188III TCNNGA 3 cut(s) 1238, 1311, 1353
Hpy8I GTNNAC 5 cut(s) 55, 402, 702, 820, 1063
Hpy99I CGWCG 2 cut(s) 503, 1391
HpyAV CCTTC 4 cut(s) 446, 559, 1061, 1534
HpyCH4III ACNGT 1 cut(s) 52
HpyCH4IV ACGT 4 cut(s) 501, 898, 1156, 1386
HpyCH4V TGCA 7 cut(s) 676, 709, 943, 1040, 1044, 1154, 1248
HpyF10VI GCNNNNNNNGC 5 cut(s) 93, 688, 959, 1123, 1207
HpyF3I CTNAG 5 cut(s) 75, 135, 419, 954, 1277
HpySE526I ACGT 4 cut(s) 501, 898, 1156, 1386
Hsp92I GRCGYC 1 cut(s) 1386
HspAI GCGC 2 cut(s) 166, 464
KspAI GTTAAC 1 cut(s) 1063
Kzo9I GATC 4 cut(s) 394, 976, 1144, 1391
Lsp1109I GCAGC 1 cut(s) 971
LweI GCATC 4 cut(s) 663, 1204, 1231, 1522
MaeI CTAG 3 cut(s) 1139, 1329, 1371
MaeII ACGT 4 cut(s) 501, 898, 1156, 1386
MaeIII GTNAC 2 cut(s) 46, 1189
MalI GATC 4 cut(s) 396, 978, 1146, 1393
MboI GATC 4 cut(s) 394, 976, 1144, 1391
MboII GAAGA 6 cut(s) 92, 793, 816, 1139, 1226, 1295
MhlI GDGCHC 4 cut(s) 322, 336, 766, 1128
MlsI TGGCCA 1 cut(s) 1292
MluCI AATT 6 cut(s) 916, 1009, 1183, 1395, 1403, 1475
MluNI TGGCCA 1 cut(s) 1292
MlyI GAGTC 4 cut(s) 65, 286, 1240, 1542
MmeI TCCRAC 2 cut(s) 522, 1369
Mox20I TGGCCA 1 cut(s) 1292
Mph1103I ATGCAT 1 cut(s) 945
MscI TGGCCA 1 cut(s) 1292
MseI TTAA 5 cut(s) 233, 965, 987, 1062, 1448
MslI CAYNNNNRTG 3 cut(s) 471, 531, 771
Msp20I TGGCCA 1 cut(s) 1292
MspA1I CMGCKG 2 cut(s) 139, 1377
MspI CCGG 2 cut(s) 392, 1485
MspR9I CCNGG 4 cut(s) 295, 344, 1294, 1437
Mva1269I GAATGC 1 cut(s) 894
MvaI CCWGG 4 cut(s) 295, 344, 1294, 1437
MvnI CGCG 1 cut(s) 1117
MwoI GCNNNNNNNGC 5 cut(s) 93, 688, 959, 1123, 1207
NdeII GATC 4 cut(s) 394, 976, 1144, 1391
NheI GCTAGC 1 cut(s) 1370
NlaIV GGNNCC 3 cut(s) 496, 856, 1136
NmuCI GTSAC 1 cut(s) 1189
NsbI TGCGCA 1 cut(s) 167
NsiI ATGCAT 1 cut(s) 945
NspI RCATGY 4 cut(s) 133, 470, 1044, 1265
PaeI GCATGC 3 cut(s) 470, 1044, 1265
PciI ACATGT 1 cut(s) 129
PcsI WCGNNNNNNNCGW 1 cut(s) 34
PctI GAATGC 1 cut(s) 894
PfeI GAWTC 5 cut(s) 213, 523, 620, 925, 1307
PkrI GCNGC 2 cut(s) 961, 1376
PleI GAGTC 4 cut(s) 65, 285, 1239, 1542
PmaCI CACGTG 1 cut(s) 1157
PmlI CACGTG 1 cut(s) 1157
PpsI GAGTC 4 cut(s) 65, 285, 1239, 1542
Ppu21I YACGTR 1 cut(s) 1157
PpuMI RGGWCCY 1 cut(s) 855
PscI ACATGT 1 cut(s) 129
PsiI TTATAA 1 cut(s) 719
Psp5II RGGWCCY 1 cut(s) 855
Psp6I CCWGG 4 cut(s) 293, 342, 1292, 1435
PspCI CACGTG 1 cut(s) 1157
PspFI CCCAGC 1 cut(s) 83
PspGI CCWGG 4 cut(s) 293, 342, 1292, 1435
PspN4I GGNNCC 3 cut(s) 496, 856, 1136
PspPI GGNCC 1 cut(s) 855
PspPPI RGGWCCY 1 cut(s) 855
PstNI CAGNNNCTG 1 cut(s) 682
PvuII CAGCTG 1 cut(s) 139
RsaI GTAC 2 cut(s) 124, 1103
RsaNI GTAC 2 cut(s) 123, 1102
RseI CAYNNNNRTG 3 cut(s) 471, 531, 771
SaqAI TTAA 5 cut(s) 233, 965, 987, 1062, 1448
SatI GCNGC 2 cut(s) 960, 1375
Sau3AI GATC 4 cut(s) 394, 976, 1144, 1391
Sau96I GGNCC 1 cut(s) 855
SchI GAGTC 4 cut(s) 65, 286, 1240, 1542
ScrFI CCNGG 4 cut(s) 295, 344, 1294, 1437
SduI GDGCHC 4 cut(s) 322, 336, 766, 1128
SfaNI GCATC 4 cut(s) 663, 1204, 1231, 1522
SfcI CTRYAG 2 cut(s) 798, 1441
SinI GGWCC 1 cut(s) 855
SmiMI CAYNNNNRTG 3 cut(s) 471, 531, 771
SphI GCATGC 3 cut(s) 470, 1044, 1265
Sse9I AATT 6 cut(s) 916, 1009, 1183, 1395, 1403, 1475
SsiI CCGC 3 cut(s) 244, 1115, 1375
SspMI CTAG 3 cut(s) 1139, 1329, 1371
StyD4I CCNGG 4 cut(s) 293, 342, 1292, 1435
StyI CCWWGG 1 cut(s) 858
TaaI ACNGT 1 cut(s) 52
TaiI ACGT 4 cut(s) 504, 901, 1159, 1389
TaqI TCGA 3 cut(s) 322, 336, 882
TasI AATT 6 cut(s) 916, 1009, 1183, 1395, 1403, 1475
TatI WGTACW 1 cut(s) 1101
TauI GCSGC 1 cut(s) 1377
TfiI GAWTC 5 cut(s) 213, 523, 620, 925, 1307
Tru1I TTAA 5 cut(s) 233, 965, 987, 1062, 1448
Tru9I TTAA 5 cut(s) 233, 965, 987, 1062, 1448
TscAI CASTG 2 cut(s) 12, 168
TseFI GTSAC 1 cut(s) 1189
TseI GCWGC 1 cut(s) 959
Tsp45I GTSAC 1 cut(s) 1189
TspDTI ATGAA 7 cut(s) 132, 378, 515, 1156, 1220, 1488, 1553
TspGWI ACGGA 2 cut(s) 140, 577
TspRI CASTG 2 cut(s) 12, 168
VpaK11BI GGWCC 1 cut(s) 855
XapI RAATTY 3 cut(s) 1009, 1183, 1475
XceI RCATGY 4 cut(s) 133, 470, 1044, 1265
XcmI CCANNNNNNNNNTGG 1 cut(s) 811
XmiI GTMKAC 2 cut(s) 401, 701
XspI CTAG 3 cut(s) 1139, 1329, 1371
ZraI GACGTC 1 cut(s) 1387
Zsp2I ATGCAT 1 cut(s) 945
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.