Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003356.1

Orthogroup ID

OG0006694

Physical Location & Seq

Genomic Coordinates Forward (+)

16268 .. 16750

Gene Structure 483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003356.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

atggtaaaagagtacaagattgaaccgcgattagagcactatgggtgcctagttgatcttcttgcacgtgctggtttcattgacgaagctttgaatttggtgacaacaatgcccatgaagcctgatgccgtaatatggaggagtcttcttgatgcttgcagtaagcaacagcatgctagtattgagctaagtgaagaagtggccgggcagatccttgagtctggagaagaggatgtttctagaggtgtttatgtgctattgtcaagagtctatgcttctgcttcagctagccgctggaatgatgtcggatcaatttggaaattgatgacagaggagggtatagccaaagagcttggctgtagtttaatagacatagatggtattacgcatgaattttttgctggggacacatctcatccttgtagtagagaaatatatcagttcctggatgcgatgaaggaaagacttgttaattctacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

160

Amino Acids

17.87

Weight (kDa)

4.74

Isoelectric Point (pI)

44.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006694)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59720
fragaria_vesca	FvH4_7g03570
malus_domestica	MD13G1081600.v1.1
prunus_persica	Prupe.1G265300_v2.0.a1
pyrus_communis	pycom13g07040
rosa_chinensis	RchiOBHm_Chr1g0325991 RchiOBHm_Chr1g0326081 RchiOBHm_Chr1g0326151
rosa_laevigata	RLG00000030090
rosa_multiflora	Rmu_sc0000028.1_g000011 Rmu_sc0003356.1_g000004 Rmu_sc0011910.1_g000008
rosa_roxburghii	Rroxscaffold_4G00324040
rosa_rugosa	Rorug01G0056800 Rorug01G0056900 Rorug01G0057000 Rorug01G0057100 Rorug01G0057200 Rorug01G0057300
rosa_samantha	Rh1AG073400 Rh1AG074200 Rh1BG059700 Rh1CG073000
rosa_wichuraiana	Rw0G003160 Rw0G020760 Rw1G005950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	45
AccII	CGCG	1 cut(s)	28
AciI	CCGC	2 cut(s)	26, 292
AclWI	GGATC	2 cut(s)	205, 316
AcoI	YGGCCR	1 cut(s)	201
AcsI	RAATTY	2 cut(s)	94, 392
AcuI	CTGAAG	1 cut(s)	267
AcvI	CACGTG	1 cut(s)	68
AfaI	GTAC	1 cut(s)	14
AfiI	CCNNNNNNNGG	1 cut(s)	135
AgsI	TTSAA	2 cut(s)	23, 94
AjnI	CCWGG	1 cut(s)	444
AluBI	AGCT	4 cut(s)	89, 187, 287, 352
AluI	AGCT	4 cut(s)	89, 187, 287, 352
Alw21I	GWGCWC	1 cut(s)	39
AlwI	GGATC	2 cut(s)	205, 316
AlwNI	CAGNNNCTG	1 cut(s)	445
AoxI	GGCC	1 cut(s)	201
ApoI	RAATTY	2 cut(s)	94, 392
AsuC2I	CCSGG	1 cut(s)	205
AsuHPI	GGTGA	1 cut(s)	112
AsuNHI	GCTAGC	1 cut(s)	287
BanI	GGYRCC	1 cut(s)	45
BbrPI	CACGTG	1 cut(s)	68
BbsI	GAAGAC	1 cut(s)	137
Bbv12I	GWGCWC	1 cut(s)	39
BccI	CCATC	1 cut(s)	371
BceAI	ACGGC	1 cut(s)	113
BciT130I	CCWGG	1 cut(s)	446
BcnI	CCSGG	1 cut(s)	205
BfaI	CTAG	4 cut(s)	50, 177, 240, 288
BfmI	CTRYAG	1 cut(s)	358
BisI	GCNGC	1 cut(s)	292
BlsI	GCNGC	1 cut(s)	293
Bme1390I	CCNGG	2 cut(s)	205, 446
BmiI	GGNNCC	1 cut(s)	47
BmrFI	CCNGG	2 cut(s)	205, 446
BmsI	GCATC	3 cut(s)	115, 142, 439
BmtI	GCTAGC	1 cut(s)	291
BpiI	GAAGAC	1 cut(s)	137
BpmI	CTGGAG	1 cut(s)	243
BpuEI	CTTGAG	1 cut(s)	236
BpuMI	CCSGG	1 cut(s)	205
BsaAI	YACGTR	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	1 cut(s)	135
BseBI	CCWGG	1 cut(s)	446
BseGI	GGATG	3 cut(s)	238, 415, 454
BseLI	CCNNNNNNNGG	1 cut(s)	135
BseRI	GAGGAG	2 cut(s)	154, 347
BseYI	CCCAGC	1 cut(s)	401
Bsh1236I	CGCG	1 cut(s)	28
BshFI	GGCC	1 cut(s)	203
BshNI	GGYRCC	1 cut(s)	45
BsiHKAI	GWGCWC	1 cut(s)	39
BsiSI	CCGG	1 cut(s)	204
BslFI	GGGAC	1 cut(s)	419
BslI	CCNNNNNNNGG	1 cut(s)	135
BsmFI	GGGAC	1 cut(s)	419
BsnI	GGCC	1 cut(s)	203
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp143I	GATC	3 cut(s)	55, 210, 308
BspACI	CCGC	2 cut(s)	26, 292
BspANI	GGCC	1 cut(s)	203
BspFNI	CGCG	1 cut(s)	28
BspLI	GGNNCC	1 cut(s)	47
BspOI	GCTAGC	1 cut(s)	291
BspPI	GGATC	2 cut(s)	205, 316
BspT107I	GGYRCC	1 cut(s)	45
BssMI	GATC	3 cut(s)	55, 210, 308
Bst2UI	CCWGG	1 cut(s)	446
Bst6I	CTCTTC	1 cut(s)	222
BstBAI	YACGTR	1 cut(s)	68
BstC8I	GCNNGC	3 cut(s)	157, 174, 289
BstDEI	CTNAG	1 cut(s)	188
BstF5I	GGATG	3 cut(s)	238, 415, 454
BstFNI	CGCG	1 cut(s)	28
BstKTI	GATC	3 cut(s)	58, 213, 311
BstMBI	GATC	3 cut(s)	55, 210, 308
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 118
BstNI	CCWGG	1 cut(s)	446
BstNSI	RCATGY	1 cut(s)	176
BstSCI	CCNGG	2 cut(s)	203, 444
BstSFI	CTRYAG	1 cut(s)	358
BstUI	CGCG	1 cut(s)	28
BstV2I	GAAGAC	1 cut(s)	137
BstX2I	RGATCY	1 cut(s)	210
BstYI	RGATCY	1 cut(s)	210
BsuRI	GGCC	1 cut(s)	203
BtgZI	GCGATG	1 cut(s)	467
BtsCI	GGATG	3 cut(s)	238, 415, 454
Cac8I	GCNNGC	3 cut(s)	157, 174, 289
CaiI	CAGNNNCTG	1 cut(s)	445
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	4 cut(s)	115, 173, 389, 480
CviJI	RGCY	9 cut(s)	89, 121, 187, 203, 287, 291, 344, 352, 357
CviKI_1	RGCY	9 cut(s)	89, 121, 187, 203, 287, 291, 344, 352, 357
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	1 cut(s)	188
DpnI	GATC	3 cut(s)	57, 212, 310
DpnII	GATC	3 cut(s)	55, 210, 308
EaeI	YGGCCR	1 cut(s)	201
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
Eco57I	CTGAAG	1 cut(s)	267
Eco72I	CACGTG	1 cut(s)	68
EcoRII	CCWGG	1 cut(s)	444
FaeI	CATG	4 cut(s)	118, 176, 392, 483
FaqI	GGGAC	1 cut(s)	419
FatI	CATG	4 cut(s)	114, 172, 388, 479
Fnu4HI	GCNGC	1 cut(s)	292
FokI	GGATG	3 cut(s)	245, 402, 461
Fsp4HI	GCNGC	1 cut(s)	292
FspBI	CTAG	4 cut(s)	50, 177, 240, 288
GluI	GCNGC	1 cut(s)	292
GsaI	CCCAGC	1 cut(s)	405
GsuI	CTGGAG	1 cut(s)	243
HaeIII	GGCC	1 cut(s)	203
HapII	CCGG	1 cut(s)	204
Hin1II	CATG	4 cut(s)	118, 176, 392, 483
HindIII	AAGCTT	1 cut(s)	87
HinfI	GANTC	3 cut(s)	142, 218, 267
HpaII	CCGG	1 cut(s)	204
HphI	GGTGA	1 cut(s)	112
Hpy188I	TCNGA	1 cut(s)	308
Hpy188III	TCNNGA	4 cut(s)	149, 222, 240, 264
HpyAV	CCTTC	1 cut(s)	451
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	2 cut(s)	65, 159
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 118
HpyF3I	CTNAG	1 cut(s)	188
HpySE526I	ACGT	1 cut(s)	67
Hsp92II	CATG	4 cut(s)	118, 176, 392, 483
Kzo9I	GATC	3 cut(s)	55, 210, 308
LpnPI	CCDG	8 cut(s)	57, 135, 207, 217, 280, 387, 431, 458
LweI	GCATC	3 cut(s)	115, 142, 439
MaeI	CTAG	4 cut(s)	50, 177, 240, 288
MaeII	ACGT	1 cut(s)	67
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	3 cut(s)	57, 212, 310
MboI	GATC	3 cut(s)	55, 210, 308
MboII	GAAGA	4 cut(s)	50, 137, 206, 239
MflI	RGATCY	1 cut(s)	210
MhlI	GDGCHC	1 cut(s)	39
MluCI	AATT	5 cut(s)	94, 312, 320, 392, 472
MlyI	GAGTC	3 cut(s)	151, 227, 276
MmeI	TCCRAC	1 cut(s)	286
MnlI	CCTC	5 cut(s)	132, 223, 236, 325, 328
MseI	TTAA	2 cut(s)	365, 471
MspA1I	CMGCKG	1 cut(s)	294
MspI	CCGG	1 cut(s)	204
MspR9I	CCNGG	2 cut(s)	205, 446
MvaI	CCWGG	1 cut(s)	446
MvnI	CGCG	1 cut(s)	28
MwoI	GCNNNNNNNGC	2 cut(s)	34, 118
NciI	CCSGG	1 cut(s)	205
NdeII	GATC	3 cut(s)	55, 210, 308
NheI	GCTAGC	1 cut(s)	287
NlaIII	CATG	4 cut(s)	118, 176, 392, 483
NlaIV	GGNNCC	1 cut(s)	47
NmuCI	GTSAC	1 cut(s)	100
NspI	RCATGY	1 cut(s)	176
PaeI	GCATGC	1 cut(s)	176
PfoI	TCCNGGA	1 cut(s)	444
PkrI	GCNGC	1 cut(s)	293
PleI	GAGTC	3 cut(s)	150, 226, 275
PmaCI	CACGTG	1 cut(s)	68
PmlI	CACGTG	1 cut(s)	68
PpsI	GAGTC	3 cut(s)	150, 226, 275
Ppu21I	YACGTR	1 cut(s)	68
Psp6I	CCWGG	1 cut(s)	444
PspCI	CACGTG	1 cut(s)	68
PspFI	CCCAGC	1 cut(s)	401
PspGI	CCWGG	1 cut(s)	444
PspN4I	GGNNCC	1 cut(s)	47
PstNI	CAGNNNCTG	1 cut(s)	445
PsuI	RGATCY	1 cut(s)	210
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
SaqAI	TTAA	2 cut(s)	365, 471
SatI	GCNGC	1 cut(s)	292
Sau3AI	GATC	3 cut(s)	55, 210, 308
SchI	GAGTC	3 cut(s)	151, 227, 276
ScrFI	CCNGG	2 cut(s)	205, 446
SduI	GDGCHC	1 cut(s)	39
SetI	ASST	6 cut(s)	70, 91, 189, 247, 289, 354
SfaNI	GCATC	3 cut(s)	115, 142, 439
SfcI	CTRYAG	1 cut(s)	358
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
SphI	GCATGC	1 cut(s)	176
Sse9I	AATT	5 cut(s)	94, 312, 320, 392, 472
SsiI	CCGC	2 cut(s)	26, 292
SspMI	CTAG	4 cut(s)	50, 177, 240, 288
StyD4I	CCNGG	2 cut(s)	203, 444
TaiI	ACGT	1 cut(s)	70
TasI	AATT	5 cut(s)	94, 312, 320, 392, 472
TatI	WGTACW	1 cut(s)	12
TauI	GCSGC	1 cut(s)	294
Tru1I	TTAA	2 cut(s)	365, 471
Tru9I	TTAA	2 cut(s)	365, 471
TseFI	GTSAC	1 cut(s)	100
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	4 cut(s)	67, 131, 405, 470
XapI	RAATTY	2 cut(s)	94, 392
XbaI	TCTAGA	1 cut(s)	239
XceI	RCATGY	1 cut(s)	176
XspI	CTAG	4 cut(s)	50, 177, 240, 288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.