Rorug01G0056900

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
9381716 .. 9384908
3193 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0056900.1

Sequence Viewer

Length: 1548 bp
ATGGAGCTTCAATGGCCCCCTTCCTTCCAAGTCCTGTTTACCTTCTTGCTCTTCATTATTATGGTAGTGAACATAGCGACGAGGAGCAAAGCCAAGTACTCAGCTTCAAAAAATCTACCCCCTGGGCCATGGAAGCTACCCGTTATAGGAAATCTACACCAGCTCGTTGGCTCTCTACCCCATCATGTTCTAAGAGACTTGGCCAACAAATATGGACCCCTTATGCACCTCAAGCTTGGAGAAGTTTCCACCATAGTTGTTTCATCACCAGAGATTGCTAAAGAGGTGATGAAAACCCATGATGTTGTCTTTGCATCAAGGCCGCAGATCCTTGCTACAGCTATCATGACTTACGGTTGTACAAGCGTTTCGTTTGCACCATATGGCGATTACTGGAGACAGCTAAGAAAGATTTACGCACATGAGCTTTTGAGCAAAATGCGTGTTCAAAGCTACCGATCTGTAAGAGAAGATGAGGTACTGAATCTCATCAAACGGATTTCTTTAAAAACAGGATCAACAGTCAATCTTACCAGTGAAATTTACTCATCAACATATAGCATCTCGTACCGAGCAGCCTTTGGTAAAAGAAGCAAAGATCTTGAAAACTTCATACATTGTGTGAAGGAATCTATGAAGCTGGCGAGCGGCTTTAATTTAGCAGATGTTTTTCCTTCAGTCAAATTGCTTCATCTGCTAAGTGGGATGAAGCCCAAACTCGAGAGGCTGCATAAAGAAGCTGACAGGATAATGGAGAACATCATTAATGAGCACAAGGAAGATAAGACATCAACAAAAGTTCTCGAAGGTGAAGCAGAGGAAGACCTTCTAGATGTTCTCCTAAAGTTTCATGAACATGGCGGTGGGCTTGAGTTTTCCCTAACCACTGAAAACATCAAAGCAGTAATCATAGAGATATTTGGTGGTGGGGGTGAGACATCATCTACAACTGTTGATTGGGCAATGTCAGAAATGATTAAAAATCCGAGAATAATGAAAATGGCACAGAATGAAGTGAGGGAAGTGTTTAATAGAAAAGGGATCGCAGATGAAACAAGCAATGGGGAGATGAAATATTTGGACTTAGTTATCAAAGAGACACTAAGGTTACACCCTTCTAATCCCTTGCTACTTCCAAGAGAATGCAGTGAGAGGTGTGAGATTGATGGATATGAAATACCTGTCAAAACCAAGGTAGTTATCAATGCATGGGCAATTGCTACAGATCCAAGTTACTGGACTGAGCCTGAGAGCTTTACTCCAGAGAGATTTCTTGACAGCTCTATTGACTACAGGGGATTAAACTTTGAGTATATCCCATTTGGTGCTGGAAGGAGAATTTGCCCTGGCATATCATTTGGTCTGGCCAACGTCAAGCTCCAACTTGCAATGTTGTTATACCATTTTGATTGGAAGCTCCCCAAAGGAATGAAGCACGATGACCTGGACATGACTGAGGCCTTCGGTGTCACCTCCAGCAGGAAACAGGATCTGCACTTGATTCCCATTCCATATCATCATCCACCTACTGAAAAAGCCCAAGTATAA

Protein Analysis

515

Amino Acids

58.4

Weight (kDa)

7.31

Isoelectric Point (pI)

38.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 40 - 493 3.4e-103 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 648
AciI CCGC 3 cut(s) 323, 648, 861
AclWI GGATC 5 cut(s) 322, 523, 1049, 1220, 1497
AcoI YGGCCR 2 cut(s) 201, 1365
AcsI RAATTY 2 cut(s) 540, 1338
AcuI CTGAAG 1 cut(s) 660
AfaI GTAC 4 cut(s) 98, 361, 480, 569
AfiI CCNNNNNNNGG 2 cut(s) 146, 1479
AgsI TTSAA 4 cut(s) 11, 108, 449, 605
AjnI CCWGG 3 cut(s) 121, 1345, 1443
Alw21I GWGCWC 1 cut(s) 774
Alw26I GTCTC 4 cut(s) 189, 391, 929, 1091
AlwI GGATC 5 cut(s) 322, 523, 1049, 1220, 1497
AlwNI CAGNNNCTG 1 cut(s) 1492
Ama87I CYCGRG 1 cut(s) 719
AoxI GGCC 6 cut(s) 14, 125, 201, 320, 1365, 1458
ApeKI GCWGC 2 cut(s) 575, 727
ApoI RAATTY 2 cut(s) 540, 1338
AseI ATTAAT 1 cut(s) 765
Asp700I GAANNNNTTC 1 cut(s) 825
AspS9I GGNCC 3 cut(s) 15, 125, 215
AsuHPI GGTGA 5 cut(s) 258, 298, 821, 944, 1462
AvaI CYCGRG 1 cut(s) 719
AvaII GGWCC 1 cut(s) 215
BalI TGGCCA 2 cut(s) 203, 1367
BarI GAAGNNNNNNTAC 2 cut(s) 462, 494
BbsI GAAGAC 1 cut(s) 828
Bbv12I GWGCWC 1 cut(s) 774
BbvI GCAGC 2 cut(s) 587, 714
BccI CCATC 2 cut(s) 189, 1160
BciT130I CCWGG 3 cut(s) 123, 1347, 1445
BcoDI GTCTC 4 cut(s) 189, 391, 929, 1091
BfaI CTAG 1 cut(s) 830
BfmI CTRYAG 3 cut(s) 336, 1221, 1291
BglII AGATCT 1 cut(s) 598
BisI GCNGC 4 cut(s) 323, 576, 649, 728
BlsI GCNGC 4 cut(s) 324, 577, 650, 729
BmcAI AGTACT 1 cut(s) 98
Bme1390I CCNGG 3 cut(s) 123, 1347, 1445
Bme18I GGWCC 1 cut(s) 215
BmeT110I CYCGRG 1 cut(s) 719
BmgT120I GGNCC 3 cut(s) 15, 125, 215
BmiI GGNNCC 2 cut(s) 17, 217
BmrFI CCNGG 3 cut(s) 123, 1347, 1445
BmsI GCATC 2 cut(s) 323, 570
BpiI GAAGAC 1 cut(s) 828
BplI GAGNNNNNCTC 2 cut(s) 1243, 1275
BpmI CTGGAG 3 cut(s) 415, 1245, 1459
BpuEI CTTGAG 2 cut(s) 215, 890
BsaJI CCNNGG 5 cut(s) 121, 122, 128, 1191, 1345
Bsc4I CCNNNNNNNGG 2 cut(s) 146, 1479
Bse1I ACTGG 3 cut(s) 398, 534, 1241
Bse3DI GCAATG 3 cut(s) 969, 1066, 1395
BseBI CCWGG 3 cut(s) 123, 1347, 1445
BseDI CCNNGG 5 cut(s) 121, 122, 128, 1191, 1345
BseGI GGATG 2 cut(s) 711, 1519
BseLI CCNNNNNNNGG 2 cut(s) 146, 1479
BseMI GCAATG 3 cut(s) 969, 1066, 1395
BseMII CTCAG 4 cut(s) 114, 1233, 1239, 1446
BseNI ACTGG 3 cut(s) 398, 534, 1241
BseRI GAGGAG 1 cut(s) 97
BseXI GCAGC 2 cut(s) 587, 714
BsgI GTGCAG 1 cut(s) 1478
BshFI GGCC 6 cut(s) 16, 127, 203, 322, 1367, 1460
BsiHKAI GWGCWC 1 cut(s) 774
BsiHKCI CYCGRG 1 cut(s) 719
BslI CCNNNNNNNGG 2 cut(s) 146, 1479
BsmAI GTCTC 4 cut(s) 189, 391, 929, 1091
BsmI GAATGC 1 cut(s) 1148
BsnI GGCC 6 cut(s) 16, 127, 203, 322, 1367, 1460
BsoBI CYCGRG 1 cut(s) 719
Bsp1286I GDGCHC 1 cut(s) 774
Bsp1407I TGTACA 1 cut(s) 359
Bsp143I GATC 7 cut(s) 327, 458, 515, 598, 1041, 1225, 1489
Bsp19I CCATGG 1 cut(s) 128
BspACI CCGC 3 cut(s) 323, 648, 861
BspANI GGCC 6 cut(s) 16, 127, 203, 322, 1367, 1460
BspCNI CTCAG 4 cut(s) 113, 1234, 1240, 1447
BspHI TCATGA 2 cut(s) 345, 850
BspLI GGNNCC 2 cut(s) 17, 217
BspPI GGATC 5 cut(s) 322, 523, 1049, 1220, 1497
BspQI GCTCTTC 1 cut(s) 56
BsrBI CCGCTC 1 cut(s) 648
BsrDI GCAATG 3 cut(s) 969, 1066, 1395
BsrGI TGTACA 1 cut(s) 359
BsrI ACTGG 3 cut(s) 398, 534, 1241
BssECI CCNNGG 5 cut(s) 121, 122, 128, 1191, 1345
BssMI GATC 7 cut(s) 327, 458, 515, 598, 1041, 1225, 1489
BssT1I CCWWGG 2 cut(s) 128, 1191
Bst2UI CCWGG 3 cut(s) 123, 1347, 1445
Bst4CI ACNGT 3 cut(s) 356, 523, 952
Bst6I CTCTTC 1 cut(s) 56
BstAUI TGTACA 1 cut(s) 359
BstC8I GCNNGC 2 cut(s) 642, 646
BstDEI CTNAG 9 cut(s) 100, 191, 404, 698, 1084, 1103, 1242, 1248, 1455
BstDSI CCRYGG 1 cut(s) 128
BstENI CCTNNNNNAGG 1 cut(s) 1477
BstF5I GGATG 2 cut(s) 711, 1519
BstKTI GATC 7 cut(s) 330, 461, 518, 601, 1044, 1228, 1492
BstMAI GTCTC 4 cut(s) 189, 391, 929, 1091
BstMBI GATC 7 cut(s) 327, 458, 515, 598, 1041, 1225, 1489
BstMWI GCNNNNNNNGC 4 cut(s) 13, 133, 232, 694
BstNI CCWGG 3 cut(s) 123, 1347, 1445
BstSCI CCNGG 3 cut(s) 121, 1345, 1443
BstSFI CTRYAG 3 cut(s) 336, 1221, 1291
BstV1I GCAGC 2 cut(s) 587, 714
BstV2I GAAGAC 1 cut(s) 828
BstX2I RGATCY 4 cut(s) 327, 598, 1225, 1489
BstXI CCANNNNNNTGG 2 cut(s) 167, 1236
BstYI RGATCY 4 cut(s) 327, 598, 1225, 1489
BsuRI GGCC 6 cut(s) 16, 127, 203, 322, 1367, 1460
BtgI CCRYGG 1 cut(s) 128
BtsCI GGATG 2 cut(s) 711, 1519
BtsI GCAGTG 1 cut(s) 1153
BtsIMutI CAGTG 3 cut(s) 541, 885, 1153
Cac8I GCNNGC 2 cut(s) 642, 646
CaiI CAGNNNCTG 1 cut(s) 1492
CciI TCATGA 2 cut(s) 345, 850
Cfr13I GGNCC 3 cut(s) 15, 125, 215
Csp6I GTAC 4 cut(s) 97, 360, 479, 568
CspCI CAANNNNNGTGG 2 cut(s) 238, 273
CviAII CATG 9 cut(s) 129, 185, 299, 346, 422, 851, 857, 1209, 1450
CviQI GTAC 4 cut(s) 97, 360, 479, 568
DdeI CTNAG 9 cut(s) 100, 191, 404, 698, 1084, 1103, 1242, 1248, 1455
DpnI GATC 7 cut(s) 329, 460, 517, 600, 1043, 1227, 1491
DpnII GATC 7 cut(s) 327, 458, 515, 598, 1041, 1225, 1489
DraI TTTAAA 1 cut(s) 507
EaeI YGGCCR 2 cut(s) 201, 1365
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
Eco130I CCWWGG 2 cut(s) 128, 1191
Eco147I AGGCCT 1 cut(s) 1460
Eco47I GGWCC 1 cut(s) 215
Eco57I CTGAAG 1 cut(s) 660
Eco88I CYCGRG 1 cut(s) 719
EcoNI CCTNNNNNAGG 1 cut(s) 1477
EcoRII CCWGG 3 cut(s) 121, 1345, 1443
EcoT14I CCWWGG 2 cut(s) 128, 1191
EcoT22I ATGCAT 1 cut(s) 1210
ErhI CCWWGG 2 cut(s) 128, 1191
FaeI CATG 9 cut(s) 132, 188, 302, 349, 425, 854, 860, 1212, 1453
FatI CATG 9 cut(s) 128, 184, 298, 345, 421, 850, 856, 1208, 1449
FauNDI CATATG 1 cut(s) 382
Fnu4HI GCNGC 4 cut(s) 323, 576, 649, 728
FokI GGATG 2 cut(s) 718, 1506
Fsp4HI GCNGC 4 cut(s) 323, 576, 649, 728
FspBI CTAG 1 cut(s) 830
GluI GCNGC 4 cut(s) 323, 576, 649, 728
GsuI CTGGAG 3 cut(s) 415, 1245, 1459
HaeIII GGCC 6 cut(s) 16, 127, 203, 322, 1367, 1460
Hin1II CATG 9 cut(s) 132, 188, 302, 349, 425, 854, 860, 1212, 1453
HindIII AAGCTT 1 cut(s) 233
HinfI GANTC 3 cut(s) 484, 629, 1501
HphI GGTGA 5 cut(s) 258, 298, 821, 944, 1462
Hpy166II GTNNAC 2 cut(s) 39, 70
Hpy188I TCNGA 2 cut(s) 970, 987
Hpy188III TCNNGA 8 cut(s) 346, 602, 721, 803, 830, 851, 1262, 1274
Hpy8I GTNNAC 2 cut(s) 39, 70
Hpy99I CGWCG 1 cut(s) 82
HpyCH4III ACNGT 3 cut(s) 356, 523, 952
HpyCH4IV ACGT 1 cut(s) 1371
HpyCH4V TGCA 8 cut(s) 226, 314, 377, 730, 1146, 1208, 1388, 1495
HpyF10VI GCNNNNNNNGC 4 cut(s) 13, 133, 232, 694
HpyF3I CTNAG 9 cut(s) 100, 191, 404, 698, 1084, 1103, 1242, 1248, 1455
HpySE526I ACGT 1 cut(s) 1371
Hsp92II CATG 9 cut(s) 132, 188, 302, 349, 425, 854, 860, 1212, 1453
Kzo9I GATC 7 cut(s) 327, 458, 515, 598, 1041, 1225, 1489
LguI GCTCTTC 1 cut(s) 56
LmnI GCTCC 4 cut(s) 4, 84, 1383, 1422
Lsp1109I GCAGC 2 cut(s) 587, 714
LweI GCATC 2 cut(s) 323, 570
MaeI CTAG 1 cut(s) 830
MaeII ACGT 1 cut(s) 1371
MaeIII GTNAC 3 cut(s) 1107, 1232, 1468
MalI GATC 7 cut(s) 329, 460, 517, 600, 1043, 1227, 1491
MbiI CCGCTC 1 cut(s) 648
MboI GATC 7 cut(s) 327, 458, 515, 598, 1041, 1225, 1489
MboII GAAGA 4 cut(s) 43, 482, 791, 833
MfeI CAATTG 1 cut(s) 1215
MflI RGATCY 4 cut(s) 327, 598, 1225, 1489
MhlI GDGCHC 1 cut(s) 774
MlsI TGGCCA 2 cut(s) 203, 1367
MluCI AATT 5 cut(s) 540, 655, 683, 1215, 1338
MluNI TGGCCA 2 cut(s) 203, 1367
MmeI TCCRAC 1 cut(s) 1405
Mox20I TGGCCA 2 cut(s) 203, 1367
Mph1103I ATGCAT 1 cut(s) 1210
MroXI GAANNNNTTC 1 cut(s) 825
MscI TGGCCA 2 cut(s) 203, 1367
MseI TTAA 6 cut(s) 506, 654, 765, 978, 1029, 1301
MslI CAYNNNNRTG 3 cut(s) 59, 855, 861
Msp20I TGGCCA 2 cut(s) 203, 1367
MspR9I CCNGG 3 cut(s) 123, 1347, 1445
MunI CAATTG 1 cut(s) 1215
Mva1269I GAATGC 1 cut(s) 1148
MvaI CCWGG 3 cut(s) 123, 1347, 1445
MwoI GCNNNNNNNGC 4 cut(s) 13, 133, 232, 694
NcoI CCATGG 1 cut(s) 128
NdeI CATATG 1 cut(s) 382
NdeII GATC 7 cut(s) 327, 458, 515, 598, 1041, 1225, 1489
NlaIII CATG 9 cut(s) 132, 188, 302, 349, 425, 854, 860, 1212, 1453
NlaIV GGNNCC 2 cut(s) 17, 217
NmuCI GTSAC 1 cut(s) 1468
NsiI ATGCAT 1 cut(s) 1210
PaeR7I CTCGAG 1 cut(s) 719
PagI TCATGA 2 cut(s) 345, 850
PasI CCCWGGG 1 cut(s) 122
PceI AGGCCT 1 cut(s) 1460
PciSI GCTCTTC 1 cut(s) 56
PctI GAATGC 1 cut(s) 1148
PdmI GAANNNNTTC 1 cut(s) 825
PfeI GAWTC 3 cut(s) 484, 629, 1501
PkrI GCNGC 4 cut(s) 324, 577, 650, 729
PshBI ATTAAT 1 cut(s) 765
Psp6I CCWGG 3 cut(s) 121, 1345, 1443
PspGI CCWGG 3 cut(s) 121, 1345, 1443
PspN4I GGNNCC 2 cut(s) 17, 217
PspPI GGNCC 3 cut(s) 15, 125, 215
PstNI CAGNNNCTG 1 cut(s) 1492
PsuI RGATCY 4 cut(s) 327, 598, 1225, 1489
RsaI GTAC 4 cut(s) 98, 361, 480, 569
RsaNI GTAC 4 cut(s) 97, 360, 479, 568
RseI CAYNNNNRTG 3 cut(s) 59, 855, 861
SapI GCTCTTC 1 cut(s) 56
SaqAI TTAA 6 cut(s) 506, 654, 765, 978, 1029, 1301
SatI GCNGC 4 cut(s) 323, 576, 649, 728
Sau3AI GATC 7 cut(s) 327, 458, 515, 598, 1041, 1225, 1489
Sau96I GGNCC 3 cut(s) 15, 125, 215
ScaI AGTACT 1 cut(s) 98
ScrFI CCNGG 3 cut(s) 123, 1347, 1445
SduI GDGCHC 1 cut(s) 774
SfaNI GCATC 2 cut(s) 323, 570
SfcI CTRYAG 3 cut(s) 336, 1221, 1291
Sfr274I CTCGAG 1 cut(s) 719
SinI GGWCC 1 cut(s) 215
SlaI CTCGAG 1 cut(s) 719
SmiMI CAYNNNNRTG 3 cut(s) 59, 855, 861
SmlI CTYRAG 3 cut(s) 230, 719, 869
SmoI CTYRAG 3 cut(s) 230, 719, 869
Sse9I AATT 5 cut(s) 540, 655, 683, 1215, 1338
SseBI AGGCCT 1 cut(s) 1460
SsiI CCGC 3 cut(s) 323, 648, 861
SspI AATATT 1 cut(s) 1076
SspMI CTAG 1 cut(s) 830
StuI AGGCCT 1 cut(s) 1460
StyD4I CCNGG 3 cut(s) 121, 1345, 1443
StyI CCWWGG 2 cut(s) 128, 1191
TaaI ACNGT 3 cut(s) 356, 523, 952
TaiI ACGT 1 cut(s) 1374
TaqI TCGA 2 cut(s) 720, 804
TasI AATT 5 cut(s) 540, 655, 683, 1215, 1338
TatI WGTACW 2 cut(s) 96, 359
TauI GCSGC 2 cut(s) 325, 651
TfiI GAWTC 3 cut(s) 484, 629, 1501
Tru1I TTAA 6 cut(s) 506, 654, 765, 978, 1029, 1301
Tru9I TTAA 6 cut(s) 506, 654, 765, 978, 1029, 1301
TscAI CASTG 3 cut(s) 541, 892, 1153
TseFI GTSAC 1 cut(s) 1468
TseI GCWGC 2 cut(s) 575, 727
Tsp45I GTSAC 1 cut(s) 1468
TspGWI ACGGA 1 cut(s) 511
TspRI CASTG 3 cut(s) 541, 892, 1153
VpaK11BI GGWCC 1 cut(s) 215
VspI ATTAAT 1 cut(s) 765
XagI CCTNNNNNAGG 1 cut(s) 1477
XapI RAATTY 2 cut(s) 540, 1338
XbaI TCTAGA 1 cut(s) 829
XhoI CTCGAG 1 cut(s) 719
XmnI GAANNNNTTC 1 cut(s) 825
XspI CTAG 1 cut(s) 830
ZrmI AGTACT 1 cut(s) 98
Zsp2I ATGCAT 1 cut(s) 1210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.