Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0006694

Physical Location & Seq

Genomic Coordinates Reverse (-)

55321108 .. 55324613

Gene Structure 3506 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00324040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1578 bp

ATGGCACTGGCAATCCCACCAAATCATCGTCCTCCTCCTCCTCCTCCTCCCCCTCATCATCTCCCTATTACATTCAACACCAGTAATGGAGACTCTCTCTCACCCAACCACCACAGCCGTCTTCTCCACTTGTTGAATGAATGTACGTCCATGTCTCAGCTGAAACAAATACACGCTCACACACTGCGCACCACATCCACCGCAAACCCACACACCCTTTTTCTCCACAGCCGAATCCTCCATTTCTCATCCCTAACCGATATCCGCTACGCCTTTCGGGTTTTCAATCAGATTCAGAGTCCCAACTCTTTCACCTGGAACACCCTCATCAGGGGTTGCGCTCGAAGCTCTGGGCTCGAAAACCAGGCTATACTACTCTACTGTGAAATGTTATCACAAGGAGTTGCTCTGCCGGATGAGTATACCTTCCCTTTTGTTCTCAGAGCTTGTGCTTACTTGTTTGCCTTATCGGAAGGAAAGCAAGCGCATGCTCATGTTGTTAAACTTGGGTTTGGTTCAGACGTTTATATCGGCAATAGTTTGATTCATCTGTATGCATCTTGTGGGTGTTTGGATTACGCACTGAAGGTGTTTGAGAAAATGCGTGAGAGAAGCGTTGTGTCGTGGAATGTTATGATTGATTCTTTGGTTGGGGCTGGCGAGTTTGAGAGTTCGCTCAAAGTGTTTGGTCAGATGCAGAGGCTGTTTGAGCCTGATGGGTATACAATGCAGAGTGTTATAAATGCTTGTGCTGGTTTGGGGGCTTTGGATTTGGGAATGTGGGCTCATGCTTATGTGTTGAGGAAGTGTGATAATGCTGTAGCCACCAACGTGTTGGTGAACTCTTCGTTGGTTGATATGTATTGCAAATGTGGGTCCTTGGATATGGCTCTCCAAGTGTTTGAGGGAATGCCGAAACGTGATGTGATTACATGGAATTATATGATTCTGGGATTTGCCATGCATGGAAAAGCTGAGGCAGCCTTAAAGTGTTTTGATCGTATGGTTAATATGGAGAGTTGTAAGCCGAATTCCATCACATTCGTTGGTGTTTTGAGTGCATGCAATCACAGAGGCATGTTTGACGAAGGTCGTAAGTTCTTTGATGTGATGGTAAAAGAGTACGAGATTGAACCACGATTAGAGCACTACGGGTGCCTAGTTGATCTTCTTGCACGTGCTGGTTTCATTGACGAAGCTTTGAATTTGGTGACAACAATGCCTGTGAAGCCTGATGCTGTAATATGGAGGAGTCTTCTTGATGCCTGCAGTAGGCAACAGCATGCCAGCATTGAGCTAAGTGAAGAAGTGGCCAGGCAGATTCTTGAGTCTGGAGGAGAGGATGTTTCTAGTGGTGTTTATGTGTTATTGTCAAGAGTCTATGCTTCAGCTAGCCGCTGGAATGACGTCGGATCAATTCGGAAATTGATGACAGAGGAGGGTATAGCCAAAGAGCCTGGCTGTAGTTTAATAGACATAGATGGTATTACGCATGAATTCTTTGCCGGGGACACATCTCATCCTCATGGTAGAGAAATATATCAGGTCTTGGATGCGATGAAGGAAAGACTCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

525

Amino Acids

58.5

Weight (kDa)

6.19

Isoelectric Point (pI)

47.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	101 - 151	2.2e-08	PPR repeat family
PPR_2	PF13041	205 - 251	3.5e-08	PPR repeat family
PPR_2	PF13041	307 - 355	9.2e-10	PPR repeat family
E_motif	PF20431	428 - 491	3e-15	E motif
Eplus_motif	PF20430	497 - 518	5.9e-09	E+ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006694)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59720
fragaria_vesca	FvH4_7g03570
malus_domestica	MD13G1081600.v1.1
prunus_persica	Prupe.1G265300_v2.0.a1
pyrus_communis	pycom13g07040
rosa_chinensis	RchiOBHm_Chr1g0325991 RchiOBHm_Chr1g0326081 RchiOBHm_Chr1g0326151
rosa_laevigata	RLG00000030090
rosa_multiflora	Rmu_sc0000028.1_g000011 Rmu_sc0003356.1_g000004 Rmu_sc0011910.1_g000008
rosa_roxburghii	Rroxscaffold_4G00324040
rosa_rugosa	Rorug01G0056800 Rorug01G0056900 Rorug01G0057000 Rorug01G0057100 Rorug01G0057200 Rorug01G0057300
rosa_samantha	Rh1AG073400 Rh1AG074200 Rh1BG059700 Rh1CG073000
rosa_wichuraiana	Rw0G003160 Rw0G020760 Rw1G005950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	740
AatII	GACGTC	1 cut(s)	1410
Acc16I	TGCGCA	1 cut(s)	188
AccB1I	GGYRCC	1 cut(s)	1155
AccI	GTMKAC	2 cut(s)	422, 722
AciI	CCGC	3 cut(s)	201, 265, 1396
AclWI	GGATC	1 cut(s)	1420
AcoI	YGGCCR	1 cut(s)	1311
AcsI	RAATTY	3 cut(s)	1030, 1204, 1496
AcuI	CTGAAG	2 cut(s)	605, 1371
AcvI	CACGTG	1 cut(s)	1178
AcyI	GRCGYC	1 cut(s)	1407
AfaI	GTAC	2 cut(s)	145, 1124
AfiI	CCNNNNNNNGG	3 cut(s)	330, 331, 1272
AflIII	ACRYGT	1 cut(s)	831
AgsI	TTSAA	5 cut(s)	76, 136, 286, 1133, 1204
AjnI	CCWGG	4 cut(s)	314, 363, 1313, 1456
AjuI	GAANNNNNNNTTGG	2 cut(s)	833, 865
AleI	CACNNNNGTG	1 cut(s)	830
AluBI	AGCT	7 cut(s)	160, 348, 446, 974, 1199, 1297, 1391
AluI	AGCT	7 cut(s)	160, 348, 446, 974, 1199, 1297, 1391
Alw21I	GWGCWC	1 cut(s)	1149
Alw26I	GTCTC	2 cut(s)	84, 159
AlwI	GGATC	1 cut(s)	1420
AlwNI	CAGNNNCTG	1 cut(s)	703
AoxI	GGCC	1 cut(s)	1311
ApeKI	GCWGC	1 cut(s)	980
ApoI	RAATTY	3 cut(s)	1030, 1204, 1496
AspLEI	GCGC	3 cut(s)	189, 341, 487
AspS9I	GGNCC	1 cut(s)	876
AsuC2I	CCSGG	1 cut(s)	1507
AsuHPI	GGTGA	4 cut(s)	93, 304, 850, 1222
AsuNHI	GCTAGC	1 cut(s)	1391
AvaII	GGWCC	1 cut(s)	876
BalI	TGGCCA	1 cut(s)	1313
BanI	GGYRCC	1 cut(s)	1155
BanII	GRGCYC	2 cut(s)	357, 787
BbrPI	CACGTG	1 cut(s)	1178
BbsI	GAAGAC	2 cut(s)	113, 1247
Bbv12I	GWGCWC	1 cut(s)	1149
BbvCI	CCTCAGC	1 cut(s)	975
BbvI	GCAGC	1 cut(s)	992
BccI	CCATC	4 cut(s)	710, 1043, 1105, 1475
BceAI	ACGGC	1 cut(s)	102
BciT130I	CCWGG	4 cut(s)	316, 365, 1315, 1458
BcnI	CCSGG	1 cut(s)	1507
BcoDI	GTCTC	2 cut(s)	84, 159
BfaI	CTAG	3 cut(s)	1160, 1350, 1392
BfmI	CTRYAG	3 cut(s)	819, 1267, 1462
BisI	GCNGC	2 cut(s)	981, 1396
BlsI	GCNGC	2 cut(s)	982, 1397
Bme1390I	CCNGG	5 cut(s)	316, 365, 1315, 1458, 1507
Bme18I	GGWCC	1 cut(s)	876
BmgT120I	GGNCC	1 cut(s)	876
BmiI	GGNNCC	2 cut(s)	877, 1157
BmrFI	CCNGG	5 cut(s)	316, 365, 1315, 1458, 1507
BmsI	GCATC	5 cut(s)	566, 684, 1225, 1252, 1543
BmtI	GCTAGC	1 cut(s)	1395
BoxI	GACNNNNGTC	1 cut(s)	1089
BpiI	GAAGAC	2 cut(s)	113, 1247
BplI	GAGNNNNNCTC	2 cut(s)	81, 113
BpmI	CTGGAG	1 cut(s)	1353
Bpu10I	CCTNAGC	1 cut(s)	975
BpuEI	CTTGAG	1 cut(s)	1346
BpuMI	CCSGG	1 cut(s)	1507
BsaAI	YACGTR	1 cut(s)	1178
BsaHI	GRCGYC	1 cut(s)	1407
BsaJI	CCNNGG	2 cut(s)	879, 1506
BsaXI	ACNNNNNCTCC	2 cut(s)	1329, 1359
Bsc4I	CCNNNNNNNGG	3 cut(s)	330, 331, 1272
Bse1I	ACTGG	2 cut(s)	12, 81
BseBI	CCWGG	4 cut(s)	316, 365, 1315, 1458
BseDI	CCNNGG	2 cut(s)	879, 1506
BseGI	GGATG	6 cut(s)	194, 248, 421, 1348, 1519, 1558
BseLI	CCNNNNNNNGG	3 cut(s)	330, 331, 1272
BseMII	CTCAG	3 cut(s)	170, 454, 966
BseNI	ACTGG	2 cut(s)	12, 81
BseRI	GAGGAG	8 cut(s)	24, 27, 30, 33, 36, 1264, 1350, 1451
BseXI	GCAGC	1 cut(s)	992
BshFI	GGCC	1 cut(s)	1313
BshNI	GGYRCC	1 cut(s)	1155
BsiHKAI	GWGCWC	1 cut(s)	1149
BsiSI	CCGG	2 cut(s)	413, 1506
BslFI	GGGAC	2 cut(s)	285, 1523
BslI	CCNNNNNNNGG	3 cut(s)	330, 331, 1272
BsmAI	GTCTC	2 cut(s)	84, 159
BsmFI	GGGAC	2 cut(s)	285, 1523
BsmI	GAATGC	1 cut(s)	915
BsnI	GGCC	1 cut(s)	1313
Bsp1286I	GDGCHC	3 cut(s)	357, 787, 1149
Bsp143I	GATC	3 cut(s)	997, 1165, 1412
BspACI	CCGC	3 cut(s)	201, 265, 1396
BspANI	GGCC	1 cut(s)	1313
BspCNI	CTCAG	3 cut(s)	169, 453, 967
BspLI	GGNNCC	2 cut(s)	877, 1157
BspMAI	CTGCAG	1 cut(s)	1271
BspOI	GCTAGC	1 cut(s)	1395
BspPI	GGATC	1 cut(s)	1420
BspT107I	GGYRCC	1 cut(s)	1155
BsrI	ACTGG	2 cut(s)	12, 81
BssECI	CCNNGG	2 cut(s)	879, 1506
BssMI	GATC	3 cut(s)	997, 1165, 1412
BssNAI	GTATAC	2 cut(s)	423, 723
BssNI	GRCGYC	1 cut(s)	1407
BssT1I	CCWWGG	1 cut(s)	879
Bst1107I	GTATAC	2 cut(s)	423, 723
Bst2UI	CCWGG	4 cut(s)	316, 365, 1315, 1458
Bst4CI	ACNGT	1 cut(s)	383
Bst6I	CTCTTC	1 cut(s)	850
BstACI	GRCGYC	1 cut(s)	1407
BstBAI	YACGTR	1 cut(s)	1178
BstC8I	GCNNGC	8 cut(s)	483, 489, 658, 1063, 1267, 1284, 1288, 1393
BstDEI	CTNAG	4 cut(s)	156, 440, 975, 1298
BstENI	CCTNNNNNAGG	1 cut(s)	1270
BstF5I	GGATG	6 cut(s)	194, 248, 421, 1348, 1519, 1558
BstHHI	GCGC	3 cut(s)	189, 341, 487
BstKTI	GATC	3 cut(s)	1000, 1168, 1415
BstMAI	GTCTC	2 cut(s)	84, 159
BstMBI	GATC	3 cut(s)	997, 1165, 1412
BstMWI	GCNNNNNNNGC	4 cut(s)	345, 709, 980, 1228
BstNI	CCWGG	4 cut(s)	316, 365, 1315, 1458
BstNSI	RCATGY	4 cut(s)	491, 1065, 1081, 1286
BstPAI	GACNNNNGTC	1 cut(s)	1089
BstSCI	CCNGG	5 cut(s)	314, 363, 1313, 1456, 1505
BstSFI	CTRYAG	3 cut(s)	819, 1267, 1462
BstV1I	GCAGC	1 cut(s)	992
BstV2I	GAAGAC	2 cut(s)	113, 1247
BstXI	CCANNNNNNTGG	1 cut(s)	835
BstZ17I	GTATAC	2 cut(s)	423, 723
BsuRI	GGCC	1 cut(s)	1313
BtgZI	GCGATG	1 cut(s)	1571
BtsCI	GGATG	6 cut(s)	194, 248, 421, 1348, 1519, 1558
BtsI	GCAGTG	1 cut(s)	182
BtsIMutI	CAGTG	3 cut(s)	5, 182, 581
Cac8I	GCNNGC	8 cut(s)	483, 489, 658, 1063, 1267, 1284, 1288, 1393
CaiI	CAGNNNCTG	1 cut(s)	703
CfoI	GCGC	3 cut(s)	189, 341, 487
Cfr13I	GGNCC	1 cut(s)	876
Csp6I	GTAC	2 cut(s)	144, 1123
CviQI	GTAC	2 cut(s)	144, 1123
DdeI	CTNAG	4 cut(s)	156, 440, 975, 1298
DpnI	GATC	3 cut(s)	999, 1167, 1414
DpnII	GATC	3 cut(s)	997, 1165, 1412
EaeI	YGGCCR	1 cut(s)	1311
Eam1104I	CTCTTC	1 cut(s)	850
EarI	CTCTTC	1 cut(s)	850
Eco130I	CCWWGG	1 cut(s)	879
Eco24I	GRGCYC	2 cut(s)	357, 787
Eco32I	GATATC	1 cut(s)	262
Eco47I	GGWCC	1 cut(s)	876
Eco57I	CTGAAG	2 cut(s)	605, 1371
Eco72I	CACGTG	1 cut(s)	1178
EcoNI	CCTNNNNNAGG	1 cut(s)	1270
EcoO109I	RGGNCCY	1 cut(s)	876
EcoRI	GAATTC	2 cut(s)	1030, 1496
EcoRII	CCWGG	4 cut(s)	314, 363, 1313, 1456
EcoRV	GATATC	1 cut(s)	262
EcoT14I	CCWWGG	1 cut(s)	879
EcoT22I	ATGCAT	2 cut(s)	559, 966
EcoT38I	GRGCYC	2 cut(s)	357, 787
ErhI	CCWWGG	1 cut(s)	879
FaqI	GGGAC	2 cut(s)	285, 1523
FblI	GTMKAC	2 cut(s)	422, 722
Fnu4HI	GCNGC	2 cut(s)	981, 1396
FokI	GGATG	6 cut(s)	181, 235, 428, 1355, 1506, 1565
FriOI	GRGCYC	2 cut(s)	357, 787
Fsp4HI	GCNGC	2 cut(s)	981, 1396
FspBI	CTAG	3 cut(s)	1160, 1350, 1392
FspI	TGCGCA	1 cut(s)	188
GlaI	GCGC	3 cut(s)	188, 340, 486
GluI	GCNGC	2 cut(s)	981, 1396
GsuI	CTGGAG	1 cut(s)	1353
HaeIII	GGCC	1 cut(s)	1313
HapII	CCGG	2 cut(s)	413, 1506
HhaI	GCGC	3 cut(s)	189, 341, 487
Hin1I	GRCGYC	1 cut(s)	1407
Hin6I	GCGC	3 cut(s)	187, 339, 485
HinP1I	GCGC	3 cut(s)	187, 339, 485
HindIII	AAGCTT	1 cut(s)	1197
HpaII	CCGG	2 cut(s)	413, 1506
HphI	GGTGA	4 cut(s)	93, 304, 850, 1222
Hpy166II	GTNNAC	3 cut(s)	423, 723, 841
Hpy188I	TCNGA	8 cut(s)	291, 297, 443, 472, 520, 693, 1412, 1422
Hpy188III	TCNNGA	4 cut(s)	1259, 1325, 1332, 1374
Hpy8I	GTNNAC	3 cut(s)	423, 723, 841
Hpy99I	CGWCG	1 cut(s)	1412
HpyAV	CCTTC	5 cut(s)	436, 467, 580, 1082, 1555
HpyCH4III	ACNGT	1 cut(s)	383
HpyCH4IV	ACGT	6 cut(s)	146, 522, 831, 919, 1177, 1407
HpyCH4V	TGCA	9 cut(s)	557, 697, 730, 867, 964, 1061, 1065, 1175, 1269
HpyF10VI	GCNNNNNNNGC	4 cut(s)	345, 709, 980, 1228
HpyF3I	CTNAG	4 cut(s)	156, 440, 975, 1298
HpySE526I	ACGT	6 cut(s)	146, 522, 831, 919, 1177, 1407
Hsp92I	GRCGYC	1 cut(s)	1407
HspAI	GCGC	3 cut(s)	187, 339, 485
Kzo9I	GATC	3 cut(s)	997, 1165, 1412
Lsp1109I	GCAGC	1 cut(s)	992
LweI	GCATC	5 cut(s)	566, 684, 1225, 1252, 1543
MaeI	CTAG	3 cut(s)	1160, 1350, 1392
MaeII	ACGT	6 cut(s)	146, 522, 831, 919, 1177, 1407
MaeIII	GTNAC	1 cut(s)	1210
MalI	GATC	3 cut(s)	999, 1167, 1414
MboI	GATC	3 cut(s)	997, 1165, 1412
MboII	GAAGA	5 cut(s)	113, 837, 1160, 1247, 1316
MhlI	GDGCHC	3 cut(s)	357, 787, 1149
MlsI	TGGCCA	1 cut(s)	1313
MluCI	AATT	6 cut(s)	937, 1030, 1204, 1416, 1424, 1496
MluNI	TGGCCA	1 cut(s)	1313
MlyI	GAGTC	6 cut(s)	86, 307, 1261, 1337, 1386, 1563
MmeI	TCCRAC	1 cut(s)	1390
Mox20I	TGGCCA	1 cut(s)	1313
Mph1103I	ATGCAT	2 cut(s)	559, 966
MscI	TGGCCA	1 cut(s)	1313
MseI	TTAA	4 cut(s)	501, 986, 1008, 1469
MslI	CAYNNNNRTG	5 cut(s)	492, 552, 792, 830, 1524
Msp20I	TGGCCA	1 cut(s)	1313
MspA1I	CMGCKG	2 cut(s)	160, 1398
MspI	CCGG	2 cut(s)	413, 1506
MspR9I	CCNGG	5 cut(s)	316, 365, 1315, 1458, 1507
Mva1269I	GAATGC	1 cut(s)	915
MvaI	CCWGG	4 cut(s)	316, 365, 1315, 1458
MwoI	GCNNNNNNNGC	4 cut(s)	345, 709, 980, 1228
NciI	CCSGG	1 cut(s)	1507
NdeII	GATC	3 cut(s)	997, 1165, 1412
NheI	GCTAGC	1 cut(s)	1391
NlaIV	GGNNCC	2 cut(s)	877, 1157
NmuCI	GTSAC	1 cut(s)	1210
NsbI	TGCGCA	1 cut(s)	188
NsiI	ATGCAT	2 cut(s)	559, 966
NspI	RCATGY	4 cut(s)	491, 1065, 1081, 1286
OliI	CACNNNNGTG	1 cut(s)	830
PaeI	GCATGC	3 cut(s)	491, 1065, 1286
PctI	GAATGC	1 cut(s)	915
PfeI	GAWTC	6 cut(s)	234, 292, 544, 641, 946, 1321
PkrI	GCNGC	2 cut(s)	982, 1397
PleI	GAGTC	6 cut(s)	86, 306, 1260, 1336, 1385, 1563
PmaCI	CACGTG	1 cut(s)	1178
PmlI	CACGTG	1 cut(s)	1178
PpsI	GAGTC	6 cut(s)	86, 306, 1260, 1336, 1385, 1563
Ppu21I	YACGTR	1 cut(s)	1178
PpuMI	RGGWCCY	1 cut(s)	876
PshAI	GACNNNNGTC	1 cut(s)	1089
PsiI	TTATAA	1 cut(s)	740
Psp5II	RGGWCCY	1 cut(s)	876
Psp6I	CCWGG	4 cut(s)	314, 363, 1313, 1456
PspCI	CACGTG	1 cut(s)	1178
PspGI	CCWGG	4 cut(s)	314, 363, 1313, 1456
PspN4I	GGNNCC	2 cut(s)	877, 1157
PspPI	GGNCC	1 cut(s)	876
PspPPI	RGGWCCY	1 cut(s)	876
PstI	CTGCAG	1 cut(s)	1271
PstNI	CAGNNNCTG	1 cut(s)	703
PvuII	CAGCTG	1 cut(s)	160
RsaI	GTAC	2 cut(s)	145, 1124
RsaNI	GTAC	2 cut(s)	144, 1123
RseI	CAYNNNNRTG	5 cut(s)	492, 552, 792, 830, 1524
SaqAI	TTAA	4 cut(s)	501, 986, 1008, 1469
SatI	GCNGC	2 cut(s)	981, 1396
Sau3AI	GATC	3 cut(s)	997, 1165, 1412
Sau96I	GGNCC	1 cut(s)	876
SchI	GAGTC	6 cut(s)	86, 307, 1261, 1337, 1386, 1563
ScrFI	CCNGG	5 cut(s)	316, 365, 1315, 1458, 1507
SduI	GDGCHC	3 cut(s)	357, 787, 1149
SfaNI	GCATC	5 cut(s)	566, 684, 1225, 1252, 1543
SfcI	CTRYAG	3 cut(s)	819, 1267, 1462
SinI	GGWCC	1 cut(s)	876
SmiMI	CAYNNNNRTG	5 cut(s)	492, 552, 792, 830, 1524
SmlI	CTYRAG	1 cut(s)	1325
SmoI	CTYRAG	1 cut(s)	1325
SphI	GCATGC	3 cut(s)	491, 1065, 1286
Sse9I	AATT	6 cut(s)	937, 1030, 1204, 1416, 1424, 1496
SsiI	CCGC	3 cut(s)	201, 265, 1396
SspMI	CTAG	3 cut(s)	1160, 1350, 1392
StyD4I	CCNGG	5 cut(s)	314, 363, 1313, 1456, 1505
StyI	CCWWGG	1 cut(s)	879
TaaI	ACNGT	1 cut(s)	383
TaiI	ACGT	6 cut(s)	149, 525, 834, 922, 1180, 1410
TaqI	TCGA	2 cut(s)	343, 357
TasI	AATT	6 cut(s)	937, 1030, 1204, 1416, 1424, 1496
TauI	GCSGC	1 cut(s)	1398
TfiI	GAWTC	6 cut(s)	234, 292, 544, 641, 946, 1321
Tru1I	TTAA	4 cut(s)	501, 986, 1008, 1469
Tru9I	TTAA	4 cut(s)	501, 986, 1008, 1469
TscAI	CASTG	3 cut(s)	12, 189, 588
TseFI	GTSAC	1 cut(s)	1210
TseI	GCWGC	1 cut(s)	980
Tsp45I	GTSAC	1 cut(s)	1210
TspDTI	ATGAA	5 cut(s)	153, 536, 1177, 1509, 1574
TspRI	CASTG	3 cut(s)	12, 189, 588
VpaK11BI	GGWCC	1 cut(s)	876
XagI	CCTNNNNNAGG	1 cut(s)	1270
XapI	RAATTY	3 cut(s)	1030, 1204, 1496
XceI	RCATGY	4 cut(s)	491, 1065, 1081, 1286
XcmI	CCANNNNNNNNNTGG	1 cut(s)	832
XmiI	GTMKAC	2 cut(s)	422, 722
XspI	CTAG	3 cut(s)	1160, 1350, 1392
ZraI	GACGTC	1 cut(s)	1408
Zsp2I	ATGCAT	2 cut(s)	559, 966

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.