Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0006694

Physical Location & Seq

Genomic Coordinates Forward (+)

14943449 .. 15066338

Gene Structure 122890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG073000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGTTATCACAAGGAGTTGCTCTGCCGGATGAGTATACCTTCCCCTTTGTTCTCAGAGCTTGTGCTTACTTGTTTGCCTTACCGGAAGGAAAACAAGCGCATGCTCATGTTGTCAAGCTTGGGTTTGGTTCAGACGTTTATATCGGCAATGGTCTGATTCATCTGTATGCTTCCTGTGGGTGTTTGGATTATGCGCAGAAGGTGTTTGAGAAAATGCGTGAGAGAAGCGTTGTGTCGTGGAATGTTATGATTGATTCTTTGGTTGGGGCTGGCGAGTTTGAGAGTTCGCTCAAAGTGTTTGGTCAGATGCAGAAGCTGTTTGAGCCTGATGGGTATACAATGCAGAGTGTTATAAATGCTTGTGCTGGTTTGGGGGCTTTGGATTTGGGAATGTGGACTCATGCTTATGTGTTGAAAAAGTGTGATAATGCTGTAGCCAGCAATGTGTTGGTGAACTCTTCGTTGGTTGATATGTATTGCAAATGTGGGTCCTTGGATATGGCTCTCCAAGTGTTCGAGGGAATGCCGAAACGTGATGTGATTACATGGAATTATATGATTCTGGGATTTGCCATGCATGGAAAAGCTGAGGCAGCCTTAAAGTGTTTTGATCGTATGGTTAATATGGAGAGTTGTAAGCCGAATTCCATCACATTCGTTGGTGTTTTGAGTGCATGCAATCACAGAGGCATGGTTAACGAAGGTCGTAAGTTCTTTGATGTGATGGTAAAAGAGTACAAGATTGAACTGCAATTAGAGCACTACGGGTGCCTAGTTGATCTTCTTGCACGTGCTGGTTTCATTGACGAAGCTTTGAATTTGGTGACAACAATGCCTGTGAAGCCTGATGCTGTAATATGGAGGAGTCTTCTTGATGCTTGCAGTAAGCAACAGCATGCCAGTATTGAGCTAAGTGAAGATGTGGCTAGGCAGATCCTTGAGTCTGGAGGAGAGGATGTTTCTAGTGGTGTTTATGTGCTATTGTCAAGAGTCTATGCTTCAGCTAGCTGCTGGAACGACGTCGGATCAATTCGGAGATTGATGACAGAGGAAGGTATATCAAAAGGGCCTGGCTGTAGTATAATAGACATAGATGGTATTACGCATGAATTTTTTGCTGGGGACACGTCTCATCCTTGTAGTAGAGAAATATATCAGGTTCTGGATGCGATGAAGCTGCTTCTCAATGTCTTTGATATGTTGGATGAGCGAAAGCTAACTAAGGGATCTGGCAGGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

413

Amino Acids

45.56

Weight (kDa)

5.44

Isoelectric Point (pI)

41.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	76 - 122	2.6e-08	PPR repeat family
PPR_2	PF13041	178 - 226	6.6e-10	PPR repeat family
E_motif	PF20431	299 - 362	1.1e-14	E motif
Eplus_motif	PF20430	368 - 389	3.4e-09	E+ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006694)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59720
fragaria_vesca	FvH4_7g03570
malus_domestica	MD13G1081600.v1.1
prunus_persica	Prupe.1G265300_v2.0.a1
pyrus_communis	pycom13g07040
rosa_chinensis	RchiOBHm_Chr1g0325991 RchiOBHm_Chr1g0326081 RchiOBHm_Chr1g0326151
rosa_laevigata	RLG00000030090
rosa_multiflora	Rmu_sc0000028.1_g000011 Rmu_sc0003356.1_g000004 Rmu_sc0011910.1_g000008
rosa_roxburghii	Rroxscaffold_4G00324040
rosa_rugosa	Rorug01G0056800 Rorug01G0056900 Rorug01G0057000 Rorug01G0057100 Rorug01G0057200 Rorug01G0057300
rosa_samantha	Rh1AG073400 Rh1AG074200 Rh1BG059700 Rh1CG073000
rosa_wichuraiana	Rw0G003160 Rw0G020760 Rw1G005950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	353
AatII	GACGTC	1 cut(s)	1023
Acc16I	TGCGCA	1 cut(s)	195
AccB1I	GGYRCC	1 cut(s)	768
AccI	GTMKAC	2 cut(s)	35, 335
AclWI	GGATC	3 cut(s)	928, 1033, 1234
AcsI	RAATTY	3 cut(s)	643, 817, 1109
AcuI	CTGAAG	1 cut(s)	984
AcvI	CACGTG	1 cut(s)	791
AcyI	GRCGYC	1 cut(s)	1020
AfaI	GTAC	1 cut(s)	737
AflIII	ACRYGT	1 cut(s)	1125
AgsI	TTSAA	3 cut(s)	415, 746, 817
AjiI	CACGTC	1 cut(s)	1128
AjnI	CCWGG	1 cut(s)	1069
AjuI	GAANNNNNNNTTGG	2 cut(s)	446, 478
Alw21I	GWGCWC	1 cut(s)	762
Alw26I	GTCTC	1 cut(s)	1134
AlwI	GGATC	3 cut(s)	928, 1033, 1234
AlwNI	CAGNNNCTG	2 cut(s)	316, 1162
AoxI	GGCC	1 cut(s)	1067
ApeKI	GCWGC	3 cut(s)	593, 1008, 1177
ApoI	RAATTY	3 cut(s)	643, 817, 1109
AspLEI	GCGC	2 cut(s)	100, 196
AspS9I	GGNCC	2 cut(s)	489, 1067
AsuHPI	GGTGA	2 cut(s)	463, 835
AsuNHI	GCTAGC	1 cut(s)	1004
AvaII	GGWCC	1 cut(s)	489
BanI	GGYRCC	1 cut(s)	768
BbrPI	CACGTG	1 cut(s)	791
BbsI	GAAGAC	1 cut(s)	860
Bbv12I	GWGCWC	1 cut(s)	762
BbvCI	CCTCAGC	1 cut(s)	588
BbvI	GCAGC	3 cut(s)	605, 995, 1164
BccI	CCATC	4 cut(s)	323, 656, 718, 1088
BcgI	CGANNNNNNTGC	2 cut(s)	1159, 1193
BciT130I	CCWGG	1 cut(s)	1071
BcoDI	GTCTC	1 cut(s)	1134
BfaI	CTAG	4 cut(s)	773, 927, 963, 1005
BfmI	CTRYAG	2 cut(s)	432, 1075
BisI	GCNGC	3 cut(s)	594, 1009, 1178
BlsI	GCNGC	3 cut(s)	595, 1010, 1179
Bme1390I	CCNGG	1 cut(s)	1071
Bme18I	GGWCC	1 cut(s)	489
BmgBI	CACGTC	1 cut(s)	1128
BmgT120I	GGNCC	2 cut(s)	489, 1067
BmiI	GGNNCC	2 cut(s)	490, 770
BmrFI	CCNGG	1 cut(s)	1071
BmsI	GCATC	4 cut(s)	297, 838, 865, 1156
BmtI	GCTAGC	1 cut(s)	1008
BpiI	GAAGAC	1 cut(s)	860
BpmI	CTGGAG	1 cut(s)	966
Bpu10I	CCTNAGC	1 cut(s)	588
BpuEI	CTTGAG	1 cut(s)	959
BsaAI	YACGTR	1 cut(s)	791
BsaHI	GRCGYC	1 cut(s)	1020
BsaJI	CCNNGG	1 cut(s)	492
BsaWI	WCCGGW	1 cut(s)	82
BsaXI	ACNNNNNCTCC	2 cut(s)	942, 972
Bse1I	ACTGG	1 cut(s)	900
Bse3DI	GCAATG	2 cut(s)	154, 448
BseBI	CCWGG	1 cut(s)	1071
BseDI	CCNNGG	1 cut(s)	492
BseGI	GGATG	5 cut(s)	34, 961, 1132, 1171, 1210
BseMI	GCAATG	2 cut(s)	154, 448
BseMII	CTCAG	2 cut(s)	67, 579
BseNI	ACTGG	1 cut(s)	900
BseRI	GAGGAG	2 cut(s)	877, 963
BseXI	GCAGC	3 cut(s)	605, 995, 1164
BseYI	CCCAGC	1 cut(s)	1118
BshFI	GGCC	1 cut(s)	1069
BshNI	GGYRCC	1 cut(s)	768
BsiHKAI	GWGCWC	1 cut(s)	762
BsiSI	CCGG	2 cut(s)	26, 83
BslFI	GGGAC	1 cut(s)	1136
BsmAI	GTCTC	1 cut(s)	1134
BsmBI	CGTCTC	1 cut(s)	1134
BsmFI	GGGAC	1 cut(s)	1136
BsmI	GAATGC	1 cut(s)	528
BsnI	GGCC	1 cut(s)	1069
Bsp1286I	GDGCHC	1 cut(s)	762
Bsp143I	GATC	5 cut(s)	610, 778, 933, 1025, 1226
BspANI	GGCC	1 cut(s)	1069
BspCNI	CTCAG	2 cut(s)	66, 580
BspLI	GGNNCC	2 cut(s)	490, 770
BspOI	GCTAGC	1 cut(s)	1008
BspPI	GGATC	3 cut(s)	928, 1033, 1234
BspT107I	GGYRCC	1 cut(s)	768
BsrDI	GCAATG	2 cut(s)	154, 448
BsrI	ACTGG	1 cut(s)	900
BssECI	CCNNGG	1 cut(s)	492
BssMI	GATC	5 cut(s)	610, 778, 933, 1025, 1226
BssNAI	GTATAC	2 cut(s)	36, 336
BssNI	GRCGYC	1 cut(s)	1020
BssT1I	CCWWGG	1 cut(s)	492
Bst1107I	GTATAC	2 cut(s)	36, 336
Bst2UI	CCWGG	1 cut(s)	1071
Bst6I	CTCTTC	1 cut(s)	463
BstACI	GRCGYC	1 cut(s)	1020
BstBAI	YACGTR	1 cut(s)	791
BstC8I	GCNNGC	7 cut(s)	102, 271, 439, 676, 880, 897, 1006
BstDEI	CTNAG	4 cut(s)	53, 588, 911, 1221
BstF5I	GGATG	5 cut(s)	34, 961, 1132, 1171, 1210
BstHHI	GCGC	2 cut(s)	100, 196
BstKTI	GATC	5 cut(s)	613, 781, 936, 1028, 1229
BstMAI	GTCTC	1 cut(s)	1134
BstMBI	GATC	5 cut(s)	610, 778, 933, 1025, 1226
BstMWI	GCNNNNNNNGC	4 cut(s)	322, 593, 757, 841
BstNI	CCWGG	1 cut(s)	1071
BstNSI	RCATGY	3 cut(s)	104, 678, 899
BstSCI	CCNGG	1 cut(s)	1069
BstSFI	CTRYAG	2 cut(s)	432, 1075
BstV1I	GCAGC	3 cut(s)	605, 995, 1164
BstV2I	GAAGAC	1 cut(s)	860
BstX2I	RGATCY	2 cut(s)	933, 1226
BstYI	RGATCY	2 cut(s)	933, 1226
BstZ17I	GTATAC	2 cut(s)	36, 336
BsuRI	GGCC	1 cut(s)	1069
BtgZI	GCGATG	1 cut(s)	1184
BtrI	CACGTC	1 cut(s)	1128
BtsCI	GGATG	5 cut(s)	34, 961, 1132, 1171, 1210
Cac8I	GCNNGC	7 cut(s)	102, 271, 439, 676, 880, 897, 1006
CaiI	CAGNNNCTG	2 cut(s)	316, 1162
CfoI	GCGC	2 cut(s)	100, 196
Cfr13I	GGNCC	2 cut(s)	489, 1067
Csp6I	GTAC	1 cut(s)	736
CviQI	GTAC	1 cut(s)	736
DdeI	CTNAG	4 cut(s)	53, 588, 911, 1221
DpnI	GATC	5 cut(s)	612, 780, 935, 1027, 1228
DpnII	GATC	5 cut(s)	610, 778, 933, 1025, 1226
Eam1104I	CTCTTC	1 cut(s)	463
EarI	CTCTTC	1 cut(s)	463
Eco130I	CCWWGG	1 cut(s)	492
Eco47I	GGWCC	1 cut(s)	489
Eco57I	CTGAAG	1 cut(s)	984
Eco72I	CACGTG	1 cut(s)	791
EcoO109I	RGGNCCY	2 cut(s)	489, 1067
EcoRI	GAATTC	1 cut(s)	643
EcoRII	CCWGG	1 cut(s)	1069
EcoT14I	CCWWGG	1 cut(s)	492
EcoT22I	ATGCAT	1 cut(s)	579
ErhI	CCWWGG	1 cut(s)	492
Esp3I	CGTCTC	1 cut(s)	1134
FaqI	GGGAC	1 cut(s)	1136
FblI	GTMKAC	2 cut(s)	35, 335
Fnu4HI	GCNGC	3 cut(s)	594, 1009, 1178
FokI	GGATG	5 cut(s)	41, 968, 1119, 1178, 1217
Fsp4HI	GCNGC	3 cut(s)	594, 1009, 1178
FspBI	CTAG	4 cut(s)	773, 927, 963, 1005
FspI	TGCGCA	1 cut(s)	195
GlaI	GCGC	2 cut(s)	99, 195
GluI	GCNGC	3 cut(s)	594, 1009, 1178
GsaI	CCCAGC	1 cut(s)	1122
GsuI	CTGGAG	1 cut(s)	966
HaeIII	GGCC	1 cut(s)	1069
HapII	CCGG	2 cut(s)	26, 83
HhaI	GCGC	2 cut(s)	100, 196
Hin1I	GRCGYC	1 cut(s)	1020
Hin6I	GCGC	2 cut(s)	98, 194
HinP1I	GCGC	2 cut(s)	98, 194
HincII	GTYRAC	1 cut(s)	697
HindII	GTYRAC	1 cut(s)	697
HindIII	AAGCTT	2 cut(s)	116, 810
HinfI	GANTC	7 cut(s)	157, 254, 397, 559, 865, 941, 990
HpaI	GTTAAC	1 cut(s)	697
HpaII	CCGG	2 cut(s)	26, 83
HphI	GGTGA	2 cut(s)	463, 835
Hpy166II	GTNNAC	5 cut(s)	36, 336, 396, 454, 697
Hpy188I	TCNGA	6 cut(s)	56, 133, 156, 306, 1025, 1035
Hpy188III	TCNNGA	4 cut(s)	872, 945, 987, 1163
Hpy8I	GTNNAC	5 cut(s)	36, 336, 396, 454, 697
Hpy99I	CGWCG	2 cut(s)	1022, 1025
HpyAV	CCTTC	5 cut(s)	49, 80, 193, 695, 1046
HpyCH4IV	ACGT	5 cut(s)	135, 532, 790, 1020, 1127
HpyCH4V	TGCA	9 cut(s)	310, 343, 480, 577, 674, 678, 751, 788, 882
HpyF10VI	GCNNNNNNNGC	4 cut(s)	322, 593, 757, 841
HpyF3I	CTNAG	4 cut(s)	53, 588, 911, 1221
HpySE526I	ACGT	5 cut(s)	135, 532, 790, 1020, 1127
Hsp92I	GRCGYC	1 cut(s)	1020
HspAI	GCGC	2 cut(s)	98, 194
KspAI	GTTAAC	1 cut(s)	697
Kzo9I	GATC	5 cut(s)	610, 778, 933, 1025, 1226
Lsp1109I	GCAGC	3 cut(s)	605, 995, 1164
LweI	GCATC	4 cut(s)	297, 838, 865, 1156
MaeI	CTAG	4 cut(s)	773, 927, 963, 1005
MaeII	ACGT	5 cut(s)	135, 532, 790, 1020, 1127
MaeIII	GTNAC	1 cut(s)	823
MalI	GATC	5 cut(s)	612, 780, 935, 1027, 1228
MboI	GATC	5 cut(s)	610, 778, 933, 1025, 1226
MboII	GAAGA	4 cut(s)	450, 773, 860, 929
MflI	RGATCY	2 cut(s)	933, 1226
MhlI	GDGCHC	1 cut(s)	762
MluCI	AATT	6 cut(s)	550, 643, 752, 817, 1029, 1109
MlyI	GAGTC	4 cut(s)	391, 874, 950, 999
MmeI	TCCRAC	2 cut(s)	1003, 1182
MnlI	CCTC	7 cut(s)	511, 583, 680, 855, 941, 946, 1042
Mph1103I	ATGCAT	1 cut(s)	579
MseI	TTAA	3 cut(s)	599, 621, 696
MslI	CAYNNNNRTG	3 cut(s)	105, 165, 405
MspI	CCGG	2 cut(s)	26, 83
MspR9I	CCNGG	1 cut(s)	1071
Mva1269I	GAATGC	1 cut(s)	528
MvaI	CCWGG	1 cut(s)	1071
MwoI	GCNNNNNNNGC	4 cut(s)	322, 593, 757, 841
NdeII	GATC	5 cut(s)	610, 778, 933, 1025, 1226
NheI	GCTAGC	1 cut(s)	1004
NlaIV	GGNNCC	2 cut(s)	490, 770
NmuCI	GTSAC	1 cut(s)	823
NsbI	TGCGCA	1 cut(s)	195
NsiI	ATGCAT	1 cut(s)	579
NspI	RCATGY	3 cut(s)	104, 678, 899
PaeI	GCATGC	3 cut(s)	104, 678, 899
PctI	GAATGC	1 cut(s)	528
PfeI	GAWTC	3 cut(s)	157, 254, 559
PkrI	GCNGC	3 cut(s)	595, 1010, 1179
PleI	GAGTC	4 cut(s)	391, 873, 949, 998
PmaCI	CACGTG	1 cut(s)	791
PmlI	CACGTG	1 cut(s)	791
PpsI	GAGTC	4 cut(s)	391, 873, 949, 998
Ppu21I	YACGTR	1 cut(s)	791
PpuMI	RGGWCCY	1 cut(s)	489
PsiI	TTATAA	1 cut(s)	353
Psp5II	RGGWCCY	1 cut(s)	489
Psp6I	CCWGG	1 cut(s)	1069
PspCI	CACGTG	1 cut(s)	791
PspFI	CCCAGC	1 cut(s)	1118
PspGI	CCWGG	1 cut(s)	1069
PspN4I	GGNNCC	2 cut(s)	490, 770
PspPI	GGNCC	2 cut(s)	489, 1067
PspPPI	RGGWCCY	1 cut(s)	489
PstNI	CAGNNNCTG	2 cut(s)	316, 1162
PsuI	RGATCY	2 cut(s)	933, 1226
RsaI	GTAC	1 cut(s)	737
RsaNI	GTAC	1 cut(s)	736
RseI	CAYNNNNRTG	3 cut(s)	105, 165, 405
SaqAI	TTAA	3 cut(s)	599, 621, 696
SatI	GCNGC	3 cut(s)	594, 1009, 1178
Sau3AI	GATC	5 cut(s)	610, 778, 933, 1025, 1226
Sau96I	GGNCC	2 cut(s)	489, 1067
SchI	GAGTC	4 cut(s)	391, 874, 950, 999
ScrFI	CCNGG	1 cut(s)	1071
SduI	GDGCHC	1 cut(s)	762
SfaNI	GCATC	4 cut(s)	297, 838, 865, 1156
SfcI	CTRYAG	2 cut(s)	432, 1075
SinI	GGWCC	1 cut(s)	489
SmiMI	CAYNNNNRTG	3 cut(s)	105, 165, 405
SmlI	CTYRAG	1 cut(s)	938
SmoI	CTYRAG	1 cut(s)	938
SphI	GCATGC	3 cut(s)	104, 678, 899
Sse9I	AATT	6 cut(s)	550, 643, 752, 817, 1029, 1109
SspMI	CTAG	4 cut(s)	773, 927, 963, 1005
StyD4I	CCNGG	1 cut(s)	1069
StyI	CCWWGG	1 cut(s)	492
TaiI	ACGT	5 cut(s)	138, 535, 793, 1023, 1130
TaqI	TCGA	1 cut(s)	516
TasI	AATT	6 cut(s)	550, 643, 752, 817, 1029, 1109
TatI	WGTACW	1 cut(s)	735
TfiI	GAWTC	3 cut(s)	157, 254, 559
Tru1I	TTAA	3 cut(s)	599, 621, 696
Tru9I	TTAA	3 cut(s)	599, 621, 696
TseFI	GTSAC	1 cut(s)	823
TseI	GCWGC	3 cut(s)	593, 1008, 1177
Tsp45I	GTSAC	1 cut(s)	823
TspDTI	ATGAA	4 cut(s)	149, 790, 1122, 1187
VpaK11BI	GGWCC	1 cut(s)	489
XapI	RAATTY	3 cut(s)	643, 817, 1109
XceI	RCATGY	3 cut(s)	104, 678, 899
XcmI	CCANNNNNNNNNTGG	1 cut(s)	445
XmiI	GTMKAC	2 cut(s)	35, 335
XspI	CTAG	4 cut(s)	773, 927, 963, 1005
ZraI	GACGTC	1 cut(s)	1021
Zsp2I	ATGCAT	1 cut(s)	579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.