Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0006694

Physical Location & Seq

Genomic Coordinates Forward (+)

12061578 .. 12063134

Gene Structure 1557 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G005950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1557 bp

ATGGCACTGGCAATCCCACCAAATCATCGTCATCATCGTCTCCCTGTTACAGTCAACACCAATGATGGAGACTCTCAGTCCCCCAGCCACCACAGCCGTCTTCTCCACTTGTTGAATGAATGTACGGACATGTCTCAGCTGAAACAAATACACGCACACACACTGCGCACCACATCCACCACAAACCCACACACCCTCTTTCTCCACAGCCGAATCCTCCACTTCTCATCCTTAACCGATATCCGCTACGCCCTTCGGGTTTTCAATCAGATTGAGAGTCCCAACTCTTTCACCTGGAACACGCTCATCAGGGGTTGTGCTCGAAGCTCTGGGCTCGAAACCCAGGCTATACTACTCTACTATGAAATGTTATCACAAGGAGTTGCTCTGCCGGATCAGTATACCTTTCCCTTTGTTCTCAGAGCTTGTGCTTACTTGTTTGCCTTATCGGAAGGAAAACAAGCGCATGCTCATGTTGTCAAACTTGGGTTTGGTTCCGACGTTTATATTGGCAATAGTCTGATTCATCTGTACGCTTCTTGTGGGTGTTTGGATTACGCACGGAAGGTGTTTGAGAAAATGCGTGAGAGAAGCGTTGTGTCGTGGAATGTTATGATTGATTCTTTGGTTGGGGCTGGCGAGTTTGAGAGTTCGCTGGAAGTGTTTGGTCAGATGCAGAGGCTGTTTGAGCCTGATGGGTATACAATGCAGAGTGTTATAAATGCTTGTGCTGGTTTGGGGGCTTTGGATTTGGGAATGTGGGCTCATGCTTATGTGTTGAGGAAGTGTGATAATGCTGTAGCCAGCAATGTGTTGGTGAACTCTTCGTTGGTTGATATGTATTACAAATGTGGGTCCTTGGATATGGCTCTCCAAGTGTTCGAGGGAATGCCGAAACGTGATGTGATTACATGGAATTATATGATTCTGGGATTTGCCATGCATGGAAAAGCTGAGGCAGCCTTAAAGTGTTTTGATCGTATGGTTAATATGGAGAGTTGTAAGCCGAATTCCATCACATTCGTTGGTGTTTTGAGTGCATGCAATCACAGAGGCATGGTTAACGAAGGTCGTAAGTTCTTTGATGTGATGGTAAAGGAGTACAAGATTGAACCGCGATTAGAGCACTATGGGTGCCTAGTTGATCTTCTTGCACGTGCTGGTTTCATTGACGAAGCTTTGAATTTGGTGACAACAATGCCCATGAAGCCTGATGCCGTAATATGGAGGAGTCTTCTTGATGCTTGCAGTAAGCAACAGCATGCCAGTATTGAGCTAAGTGAAGAAGTGGCCAGGCATATCCTTGAATCTGGAGGAGAGGATGTTTCTAGTGGTGTTTATGTGCTATTGTCAAGAGTGTATGCTTCAGCTAGCCGCTGGAATGACGTCGGATCAATTCGGAAATTGATGACAGAGGAGGGTATAGCCAAAGAGCCTGGCTGTAGTTTAATAGACATAGATGGTATTACGCATGAATTCTTTGCCGGAGACACATCTCATCCTCATAGTAGAGAAATATATCATGTCTTGGATGCGATGAAGGAAAGACTCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

518

Amino Acids

58.0

Weight (kDa)

6.31

Isoelectric Point (pI)

48.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	94 - 144	7.9e-07	PPR repeat family
PPR_2	PF13041	198 - 244	6.7e-08	PPR repeat family
PPR_2	PF13041	300 - 348	9e-10	PPR repeat family
E_motif	PF20431	421 - 484	7.7e-15	E motif
Eplus_motif	PF20430	490 - 511	2.6e-09	E+ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006694)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59720
fragaria_vesca	FvH4_7g03570
malus_domestica	MD13G1081600.v1.1
prunus_persica	Prupe.1G265300_v2.0.a1
pyrus_communis	pycom13g07040
rosa_chinensis	RchiOBHm_Chr1g0325991 RchiOBHm_Chr1g0326081 RchiOBHm_Chr1g0326151
rosa_laevigata	RLG00000030090
rosa_multiflora	Rmu_sc0000028.1_g000011 Rmu_sc0003356.1_g000004 Rmu_sc0011910.1_g000008
rosa_roxburghii	Rroxscaffold_4G00324040
rosa_rugosa	Rorug01G0056800 Rorug01G0056900 Rorug01G0057000 Rorug01G0057100 Rorug01G0057200 Rorug01G0057300
rosa_samantha	Rh1AG073400 Rh1AG074200 Rh1BG059700 Rh1CG073000
rosa_wichuraiana	Rw0G003160 Rw0G020760 Rw1G005950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	719
AatII	GACGTC	1 cut(s)	1389
Acc16I	TGCGCA	1 cut(s)	167
AccB1I	GGYRCC	1 cut(s)	1134
AccI	GTMKAC	2 cut(s)	401, 701
AccII	CGCG	1 cut(s)	1117
AciI	CCGC	3 cut(s)	244, 1115, 1375
AclWI	GGATC	2 cut(s)	402, 1399
AcoI	YGGCCR	1 cut(s)	1290
AcsI	RAATTY	3 cut(s)	1009, 1183, 1475
AcuI	CTGAAG	1 cut(s)	1350
AcvI	CACGTG	1 cut(s)	1157
AcyI	GRCGYC	1 cut(s)	1386
AfaI	GTAC	3 cut(s)	124, 533, 1103
AfiI	CCNNNNNNNGG	1 cut(s)	1224
AflIII	ACRYGT	1 cut(s)	129
AgsI	TTSAA	5 cut(s)	115, 265, 1112, 1183, 1307
AhdI	GACNNNNNGTC	1 cut(s)	76
AjnI	CCWGG	4 cut(s)	293, 342, 1292, 1435
AjuI	GAANNNNNNNTTGG	2 cut(s)	812, 844
AluBI	AGCT	7 cut(s)	139, 327, 425, 953, 1178, 1276, 1370
AluI	AGCT	7 cut(s)	139, 327, 425, 953, 1178, 1276, 1370
Alw21I	GWGCWC	2 cut(s)	322, 1128
Alw26I	GTCTC	4 cut(s)	44, 63, 138, 1482
AlwI	GGATC	2 cut(s)	402, 1399
AlwNI	CAGNNNCTG	1 cut(s)	682
AoxI	GGCC	1 cut(s)	1290
ApeKI	GCWGC	1 cut(s)	959
ApoI	RAATTY	3 cut(s)	1009, 1183, 1475
AspLEI	GCGC	2 cut(s)	168, 466
AspS9I	GGNCC	1 cut(s)	855
AsuHPI	GGTGA	3 cut(s)	283, 829, 1201
AsuNHI	GCTAGC	1 cut(s)	1370
AvaII	GGWCC	1 cut(s)	855
BalI	TGGCCA	1 cut(s)	1292
BanI	GGYRCC	1 cut(s)	1134
BanII	GRGCYC	2 cut(s)	336, 766
BbrPI	CACGTG	1 cut(s)	1157
BbsI	GAAGAC	2 cut(s)	92, 1226
Bbv12I	GWGCWC	2 cut(s)	322, 1128
BbvCI	CCTCAGC	1 cut(s)	954
BbvI	GCAGC	1 cut(s)	971
BccI	CCATC	5 cut(s)	59, 689, 1022, 1084, 1454
BceAI	ACGGC	2 cut(s)	81, 1202
BciT130I	CCWGG	4 cut(s)	295, 344, 1294, 1437
BcoDI	GTCTC	4 cut(s)	44, 63, 138, 1482
BfaI	CTAG	3 cut(s)	1139, 1329, 1371
BfmI	CTRYAG	2 cut(s)	798, 1441
BisI	GCNGC	2 cut(s)	960, 1375
BlsI	GCNGC	2 cut(s)	961, 1376
Bme1390I	CCNGG	4 cut(s)	295, 344, 1294, 1437
Bme18I	GGWCC	1 cut(s)	855
BmeRI	GACNNNNNGTC	1 cut(s)	76
BmgT120I	GGNCC	1 cut(s)	855
BmiI	GGNNCC	3 cut(s)	496, 856, 1136
BmrFI	CCNGG	4 cut(s)	295, 344, 1294, 1437
BmsI	GCATC	4 cut(s)	663, 1204, 1231, 1522
BmtI	GCTAGC	1 cut(s)	1374
BpiI	GAAGAC	2 cut(s)	92, 1226
BpmI	CTGGAG	1 cut(s)	1332
Bpu10I	CCTNAGC	1 cut(s)	954
BsaAI	YACGTR	1 cut(s)	1157
BsaHI	GRCGYC	1 cut(s)	1386
BsaJI	CCNNGG	2 cut(s)	342, 858
BsaXI	ACNNNNNCTCC	2 cut(s)	1308, 1338
Bsc4I	CCNNNNNNNGG	1 cut(s)	1224
Bse1I	ACTGG	2 cut(s)	12, 1266
Bse3DI	GCAATG	1 cut(s)	814
BseBI	CCWGG	4 cut(s)	295, 344, 1294, 1437
BseDI	CCNNGG	2 cut(s)	342, 858
BseGI	GGATG	5 cut(s)	173, 227, 1327, 1498, 1537
BseLI	CCNNNNNNNGG	1 cut(s)	1224
BseMI	GCAATG	1 cut(s)	814
BseMII	CTCAG	4 cut(s)	89, 149, 433, 945
BseNI	ACTGG	2 cut(s)	12, 1266
BseRI	GAGGAG	3 cut(s)	1243, 1329, 1430
BseXI	GCAGC	1 cut(s)	971
BseYI	CCCAGC	1 cut(s)	83
Bsh1236I	CGCG	1 cut(s)	1117
BshFI	GGCC	1 cut(s)	1292
BshNI	GGYRCC	1 cut(s)	1134
BsiHKAI	GWGCWC	2 cut(s)	322, 1128
BsiSI	CCGG	2 cut(s)	392, 1485
BslFI	GGGAC	2 cut(s)	64, 264
BslI	CCNNNNNNNGG	1 cut(s)	1224
BsmAI	GTCTC	4 cut(s)	44, 63, 138, 1482
BsmBI	CGTCTC	1 cut(s)	44
BsmFI	GGGAC	2 cut(s)	64, 264
BsmI	GAATGC	1 cut(s)	894
BsnI	GGCC	1 cut(s)	1292
Bsp1286I	GDGCHC	4 cut(s)	322, 336, 766, 1128
Bsp143I	GATC	4 cut(s)	394, 976, 1144, 1391
BspACI	CCGC	3 cut(s)	244, 1115, 1375
BspANI	GGCC	1 cut(s)	1292
BspCNI	CTCAG	4 cut(s)	88, 148, 432, 946
BspFNI	CGCG	1 cut(s)	1117
BspLI	GGNNCC	3 cut(s)	496, 856, 1136
BspOI	GCTAGC	1 cut(s)	1374
BspPI	GGATC	2 cut(s)	402, 1399
BspT107I	GGYRCC	1 cut(s)	1134
BsrDI	GCAATG	1 cut(s)	814
BsrI	ACTGG	2 cut(s)	12, 1266
BssECI	CCNNGG	2 cut(s)	342, 858
BssMI	GATC	4 cut(s)	394, 976, 1144, 1391
BssNAI	GTATAC	2 cut(s)	402, 702
BssNI	GRCGYC	1 cut(s)	1386
BssT1I	CCWWGG	1 cut(s)	858
Bst1107I	GTATAC	2 cut(s)	402, 702
Bst2UI	CCWGG	4 cut(s)	295, 344, 1294, 1437
Bst4CI	ACNGT	1 cut(s)	52
Bst6I	CTCTTC	1 cut(s)	829
BstACI	GRCGYC	1 cut(s)	1386
BstBAI	YACGTR	1 cut(s)	1157
BstC8I	GCNNGC	7 cut(s)	468, 637, 805, 1042, 1246, 1263, 1372
BstDEI	CTNAG	5 cut(s)	75, 135, 419, 954, 1277
BstF5I	GGATG	5 cut(s)	173, 227, 1327, 1498, 1537
BstFNI	CGCG	1 cut(s)	1117
BstHHI	GCGC	2 cut(s)	168, 466
BstKTI	GATC	4 cut(s)	397, 979, 1147, 1394
BstMAI	GTCTC	4 cut(s)	44, 63, 138, 1482
BstMBI	GATC	4 cut(s)	394, 976, 1144, 1391
BstMWI	GCNNNNNNNGC	5 cut(s)	93, 688, 959, 1123, 1207
BstNI	CCWGG	4 cut(s)	295, 344, 1294, 1437
BstNSI	RCATGY	4 cut(s)	133, 470, 1044, 1265
BstSCI	CCNGG	4 cut(s)	293, 342, 1292, 1435
BstSFI	CTRYAG	2 cut(s)	798, 1441
BstUI	CGCG	1 cut(s)	1117
BstV1I	GCAGC	1 cut(s)	971
BstV2I	GAAGAC	2 cut(s)	92, 1226
BstZ17I	GTATAC	2 cut(s)	402, 702
BsuRI	GGCC	1 cut(s)	1292
BtgZI	GCGATG	1 cut(s)	1550
BtsCI	GGATG	5 cut(s)	173, 227, 1327, 1498, 1537
BtsI	GCAGTG	1 cut(s)	161
BtsIMutI	CAGTG	2 cut(s)	5, 161
Cac8I	GCNNGC	7 cut(s)	468, 637, 805, 1042, 1246, 1263, 1372
CaiI	CAGNNNCTG	1 cut(s)	682
CfoI	GCGC	2 cut(s)	168, 466
Cfr13I	GGNCC	1 cut(s)	855
Csp6I	GTAC	3 cut(s)	123, 532, 1102
CviQI	GTAC	3 cut(s)	123, 532, 1102
DdeI	CTNAG	5 cut(s)	75, 135, 419, 954, 1277
DpnI	GATC	4 cut(s)	396, 978, 1146, 1393
DpnII	GATC	4 cut(s)	394, 976, 1144, 1391
DriI	GACNNNNNGTC	1 cut(s)	76
EaeI	YGGCCR	1 cut(s)	1290
Eam1104I	CTCTTC	1 cut(s)	829
Eam1105I	GACNNNNNGTC	1 cut(s)	76
EarI	CTCTTC	1 cut(s)	829
Eco130I	CCWWGG	1 cut(s)	858
Eco24I	GRGCYC	2 cut(s)	336, 766
Eco32I	GATATC	1 cut(s)	241
Eco47I	GGWCC	1 cut(s)	855
Eco57I	CTGAAG	1 cut(s)	1350
Eco72I	CACGTG	1 cut(s)	1157
EcoO109I	RGGNCCY	1 cut(s)	855
EcoRI	GAATTC	2 cut(s)	1009, 1475
EcoRII	CCWGG	4 cut(s)	293, 342, 1292, 1435
EcoRV	GATATC	1 cut(s)	241
EcoT14I	CCWWGG	1 cut(s)	858
EcoT22I	ATGCAT	1 cut(s)	945
EcoT38I	GRGCYC	2 cut(s)	336, 766
ErhI	CCWWGG	1 cut(s)	858
Esp3I	CGTCTC	1 cut(s)	44
FaqI	GGGAC	2 cut(s)	64, 264
FblI	GTMKAC	2 cut(s)	401, 701
Fnu4HI	GCNGC	2 cut(s)	960, 1375
FokI	GGATG	5 cut(s)	160, 214, 1334, 1485, 1544
FriOI	GRGCYC	2 cut(s)	336, 766
Fsp4HI	GCNGC	2 cut(s)	960, 1375
FspBI	CTAG	3 cut(s)	1139, 1329, 1371
FspI	TGCGCA	1 cut(s)	167
GlaI	GCGC	2 cut(s)	167, 465
GluI	GCNGC	2 cut(s)	960, 1375
GsaI	CCCAGC	1 cut(s)	87
GsuI	CTGGAG	1 cut(s)	1332
HaeIII	GGCC	1 cut(s)	1292
HapII	CCGG	2 cut(s)	392, 1485
HhaI	GCGC	2 cut(s)	168, 466
Hin1I	GRCGYC	1 cut(s)	1386
Hin6I	GCGC	2 cut(s)	166, 464
HinP1I	GCGC	2 cut(s)	166, 464
HincII	GTYRAC	2 cut(s)	55, 1063
HindII	GTYRAC	2 cut(s)	55, 1063
HindIII	AAGCTT	1 cut(s)	1176
HinfI	GANTC	9 cut(s)	71, 213, 277, 523, 620, 925, 1231, 1307, 1548
HpaI	GTTAAC	1 cut(s)	1063
HpaII	CCGG	2 cut(s)	392, 1485
HphI	GGTGA	3 cut(s)	283, 829, 1201
Hpy166II	GTNNAC	5 cut(s)	55, 402, 702, 820, 1063
Hpy188I	TCNGA	8 cut(s)	270, 422, 451, 499, 522, 672, 1391, 1401
Hpy188III	TCNNGA	3 cut(s)	1238, 1311, 1353
Hpy8I	GTNNAC	5 cut(s)	55, 402, 702, 820, 1063
Hpy99I	CGWCG	2 cut(s)	503, 1391
HpyAV	CCTTC	5 cut(s)	263, 446, 559, 1061, 1534
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4IV	ACGT	4 cut(s)	501, 898, 1156, 1386
HpyCH4V	TGCA	7 cut(s)	676, 709, 943, 1040, 1044, 1154, 1248
HpyF10VI	GCNNNNNNNGC	5 cut(s)	93, 688, 959, 1123, 1207
HpyF3I	CTNAG	5 cut(s)	75, 135, 419, 954, 1277
HpySE526I	ACGT	4 cut(s)	501, 898, 1156, 1386
Hsp92I	GRCGYC	1 cut(s)	1386
HspAI	GCGC	2 cut(s)	166, 464
KspAI	GTTAAC	1 cut(s)	1063
Kzo9I	GATC	4 cut(s)	394, 976, 1144, 1391
Lsp1109I	GCAGC	1 cut(s)	971
LweI	GCATC	4 cut(s)	663, 1204, 1231, 1522
MaeI	CTAG	3 cut(s)	1139, 1329, 1371
MaeII	ACGT	4 cut(s)	501, 898, 1156, 1386
MaeIII	GTNAC	2 cut(s)	46, 1189
MalI	GATC	4 cut(s)	396, 978, 1146, 1393
MboI	GATC	4 cut(s)	394, 976, 1144, 1391
MboII	GAAGA	5 cut(s)	92, 816, 1139, 1226, 1295
MhlI	GDGCHC	4 cut(s)	322, 336, 766, 1128
MlsI	TGGCCA	1 cut(s)	1292
MluCI	AATT	6 cut(s)	916, 1009, 1183, 1395, 1403, 1475
MluNI	TGGCCA	1 cut(s)	1292
MlyI	GAGTC	4 cut(s)	65, 286, 1240, 1542
MmeI	TCCRAC	2 cut(s)	522, 1369
Mox20I	TGGCCA	1 cut(s)	1292
Mph1103I	ATGCAT	1 cut(s)	945
MscI	TGGCCA	1 cut(s)	1292
MseI	TTAA	5 cut(s)	233, 965, 987, 1062, 1448
MslI	CAYNNNNRTG	2 cut(s)	471, 771
Msp20I	TGGCCA	1 cut(s)	1292
MspA1I	CMGCKG	2 cut(s)	139, 1377
MspI	CCGG	2 cut(s)	392, 1485
MspR9I	CCNGG	4 cut(s)	295, 344, 1294, 1437
Mva1269I	GAATGC	1 cut(s)	894
MvaI	CCWGG	4 cut(s)	295, 344, 1294, 1437
MvnI	CGCG	1 cut(s)	1117
MwoI	GCNNNNNNNGC	5 cut(s)	93, 688, 959, 1123, 1207
NdeII	GATC	4 cut(s)	394, 976, 1144, 1391
NheI	GCTAGC	1 cut(s)	1370
NlaIV	GGNNCC	3 cut(s)	496, 856, 1136
NmuCI	GTSAC	1 cut(s)	1189
NsbI	TGCGCA	1 cut(s)	167
NsiI	ATGCAT	1 cut(s)	945
NspI	RCATGY	4 cut(s)	133, 470, 1044, 1265
PaeI	GCATGC	3 cut(s)	470, 1044, 1265
PciI	ACATGT	1 cut(s)	129
PcsI	WCGNNNNNNNCGW	1 cut(s)	34
PctI	GAATGC	1 cut(s)	894
PfeI	GAWTC	5 cut(s)	213, 523, 620, 925, 1307
PkrI	GCNGC	2 cut(s)	961, 1376
PleI	GAGTC	4 cut(s)	65, 285, 1239, 1542
PmaCI	CACGTG	1 cut(s)	1157
PmlI	CACGTG	1 cut(s)	1157
PpsI	GAGTC	4 cut(s)	65, 285, 1239, 1542
Ppu21I	YACGTR	1 cut(s)	1157
PpuMI	RGGWCCY	1 cut(s)	855
PscI	ACATGT	1 cut(s)	129
PsiI	TTATAA	1 cut(s)	719
Psp5II	RGGWCCY	1 cut(s)	855
Psp6I	CCWGG	4 cut(s)	293, 342, 1292, 1435
PspCI	CACGTG	1 cut(s)	1157
PspFI	CCCAGC	1 cut(s)	83
PspGI	CCWGG	4 cut(s)	293, 342, 1292, 1435
PspN4I	GGNNCC	3 cut(s)	496, 856, 1136
PspPI	GGNCC	1 cut(s)	855
PspPPI	RGGWCCY	1 cut(s)	855
PstNI	CAGNNNCTG	1 cut(s)	682
PvuII	CAGCTG	1 cut(s)	139
RsaI	GTAC	3 cut(s)	124, 533, 1103
RsaNI	GTAC	3 cut(s)	123, 532, 1102
RseI	CAYNNNNRTG	2 cut(s)	471, 771
SaqAI	TTAA	5 cut(s)	233, 965, 987, 1062, 1448
SatI	GCNGC	2 cut(s)	960, 1375
Sau3AI	GATC	4 cut(s)	394, 976, 1144, 1391
Sau96I	GGNCC	1 cut(s)	855
SchI	GAGTC	4 cut(s)	65, 286, 1240, 1542
ScrFI	CCNGG	4 cut(s)	295, 344, 1294, 1437
SduI	GDGCHC	4 cut(s)	322, 336, 766, 1128
SfaNI	GCATC	4 cut(s)	663, 1204, 1231, 1522
SfcI	CTRYAG	2 cut(s)	798, 1441
SinI	GGWCC	1 cut(s)	855
SmiMI	CAYNNNNRTG	2 cut(s)	471, 771
SphI	GCATGC	3 cut(s)	470, 1044, 1265
Sse9I	AATT	6 cut(s)	916, 1009, 1183, 1395, 1403, 1475
SsiI	CCGC	3 cut(s)	244, 1115, 1375
SspMI	CTAG	3 cut(s)	1139, 1329, 1371
StyD4I	CCNGG	4 cut(s)	293, 342, 1292, 1435
StyI	CCWWGG	1 cut(s)	858
TaaI	ACNGT	1 cut(s)	52
TaiI	ACGT	4 cut(s)	504, 901, 1159, 1389
TaqI	TCGA	3 cut(s)	322, 336, 882
TasI	AATT	6 cut(s)	916, 1009, 1183, 1395, 1403, 1475
TatI	WGTACW	1 cut(s)	1101
TauI	GCSGC	1 cut(s)	1377
TfiI	GAWTC	5 cut(s)	213, 523, 620, 925, 1307
Tru1I	TTAA	5 cut(s)	233, 965, 987, 1062, 1448
Tru9I	TTAA	5 cut(s)	233, 965, 987, 1062, 1448
TscAI	CASTG	2 cut(s)	12, 168
TseFI	GTSAC	1 cut(s)	1189
TseI	GCWGC	1 cut(s)	959
Tsp45I	GTSAC	1 cut(s)	1189
TspDTI	ATGAA	7 cut(s)	132, 378, 515, 1156, 1220, 1488, 1553
TspGWI	ACGGA	2 cut(s)	140, 577
TspRI	CASTG	2 cut(s)	12, 168
VpaK11BI	GGWCC	1 cut(s)	855
XapI	RAATTY	3 cut(s)	1009, 1183, 1475
XceI	RCATGY	4 cut(s)	133, 470, 1044, 1265
XcmI	CCANNNNNNNNNTGG	1 cut(s)	811
XmiI	GTMKAC	2 cut(s)	401, 701
XspI	CTAG	3 cut(s)	1139, 1329, 1371
ZraI	GACGTC	1 cut(s)	1387
Zsp2I	ATGCAT	1 cut(s)	945

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.