Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006694

Physical Location & Seq

Genomic Coordinates Forward (+)

9411629 .. 9412155

Gene Structure 527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0057200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGGCTGGTGACGAAGAACAACAGGTCATTAAACACAAGAAAGACCAGAACTCTTCCAAGACCTCAGAACCATGGGAGAATTCCAATGATGGCCACCTGCTACTAGAGAAGTTGAATTCGATCAAACAGCTTTCAGCCAATCTTGTTGGTAACATTCCTAACTATGAGGAGCTCTCGGGACCTTCAATCGGGGAGGATGATTGGGACAGGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

71

Amino Acids

7.99

Weight (kDa)

4.55

Isoelectric Point (pI)

43.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006694)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59720
fragaria_vesca	FvH4_7g03570
malus_domestica	MD13G1081600.v1.1
prunus_persica	Prupe.1G265300_v2.0.a1
pyrus_communis	pycom13g07040
rosa_chinensis	RchiOBHm_Chr1g0325991 RchiOBHm_Chr1g0326081 RchiOBHm_Chr1g0326151
rosa_laevigata	RLG00000030090
rosa_multiflora	Rmu_sc0000028.1_g000011 Rmu_sc0003356.1_g000004 Rmu_sc0011910.1_g000008
rosa_roxburghii	Rroxscaffold_4G00324040
rosa_rugosa	Rorug01G0056800 Rorug01G0056900 Rorug01G0057000 Rorug01G0057100 Rorug01G0057200 Rorug01G0057300
rosa_samantha	Rh1AG073400 Rh1AG074200 Rh1BG059700 Rh1CG073000
rosa_wichuraiana	Rw0G003160 Rw0G020760 Rw1G005950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	105
Acc36I	ACCTGC	1 cut(s)	105
AcoI	YGGCCR	1 cut(s)	91
AcsI	RAATTY	2 cut(s)	79, 115
AfiI	CCNNNNNNNGG	1 cut(s)	188
AgsI	TTSAA	2 cut(s)	115, 186
AluBI	AGCT	2 cut(s)	130, 172
AluI	AGCT	2 cut(s)	130, 172
Alw21I	GWGCWC	1 cut(s)	174
AlwNI	CAGNNNCTG	1 cut(s)	213
Ama87I	CYCGRG	1 cut(s)	175
AoxI	GGCC	1 cut(s)	91
ApoI	RAATTY	2 cut(s)	79, 115
AspS9I	GGNCC	1 cut(s)	179
AsuHPI	GGTGA	1 cut(s)	20
AvaI	CYCGRG	1 cut(s)	175
AvaII	GGWCC	1 cut(s)	179
BalI	TGGCCA	1 cut(s)	93
BanII	GRGCYC	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	174
BccI	CCATC	1 cut(s)	83
BfaI	CTAG	1 cut(s)	104
BfuAI	ACCTGC	1 cut(s)	105
Bme18I	GGWCC	1 cut(s)	179
BmeT110I	CYCGRG	1 cut(s)	175
BmgT120I	GGNCC	1 cut(s)	179
BmiI	GGNNCC	1 cut(s)	180
BplI	GAGNNNNNCTC	2 cut(s)	158, 190
BsaJI	CCNNGG	1 cut(s)	71
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
BseDI	CCNNGG	1 cut(s)	71
BseGI	GGATG	1 cut(s)	202
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseMII	CTCAG	1 cut(s)	78
BseRI	GAGGAG	1 cut(s)	182
BshFI	GGCC	1 cut(s)	93
BsiHKAI	GWGCWC	1 cut(s)	174
BsiHKCI	CYCGRG	1 cut(s)	175
BslFI	GGGAC	1 cut(s)	192
BslI	CCNNNNNNNGG	1 cut(s)	188
BsmFI	GGGAC	1 cut(s)	192
BsnI	GGCC	1 cut(s)	93
BsoBI	CYCGRG	1 cut(s)	175
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp143I	GATC	1 cut(s)	120
Bsp19I	CCATGG	1 cut(s)	71
BspANI	GGCC	1 cut(s)	93
BspCNI	CTCAG	1 cut(s)	77
BspLI	GGNNCC	1 cut(s)	180
BspMI	ACCTGC	1 cut(s)	105
BssECI	CCNNGG	1 cut(s)	71
BssMI	GATC	1 cut(s)	120
BssT1I	CCWWGG	1 cut(s)	71
Bst6I	CTCTTC	1 cut(s)	58
BstDEI	CTNAG	1 cut(s)	64
BstDSI	CCRYGG	1 cut(s)	71
BstF5I	GGATG	1 cut(s)	202
BstKTI	GATC	1 cut(s)	123
BstMBI	GATC	1 cut(s)	120
BsuRI	GGCC	1 cut(s)	93
BtgI	CCRYGG	1 cut(s)	71
BtsCI	GGATG	1 cut(s)	202
BveI	ACCTGC	1 cut(s)	105
CaiI	CAGNNNCTG	1 cut(s)	213
Cfr13I	GGNCC	1 cut(s)	179
CviAII	CATG	1 cut(s)	72
CviJI	RGCY	5 cut(s)	5, 93, 130, 137, 172
CviKI_1	RGCY	5 cut(s)	5, 93, 130, 137, 172
DdeI	CTNAG	1 cut(s)	64
DpnI	GATC	1 cut(s)	122
DpnII	GATC	1 cut(s)	120
EaeI	YGGCCR	1 cut(s)	91
Eam1104I	CTCTTC	1 cut(s)	58
EarI	CTCTTC	1 cut(s)	58
Ecl136II	GAGCTC	1 cut(s)	172
Eco130I	CCWWGG	1 cut(s)	71
Eco24I	GRGCYC	1 cut(s)	174
Eco47I	GGWCC	1 cut(s)	179
Eco53kI	GAGCTC	1 cut(s)	172
Eco88I	CYCGRG	1 cut(s)	175
EcoICRI	GAGCTC	1 cut(s)	172
EcoO109I	RGGNCCY	1 cut(s)	179
EcoRI	GAATTC	2 cut(s)	79, 115
EcoT14I	CCWWGG	1 cut(s)	71
EcoT38I	GRGCYC	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	71
FaeI	CATG	1 cut(s)	75
FaiI	YATR	2 cut(s)	73, 165
FaqI	GGGAC	1 cut(s)	192
FatI	CATG	1 cut(s)	71
FokI	GGATG	1 cut(s)	209
FriOI	GRGCYC	1 cut(s)	174
FspBI	CTAG	1 cut(s)	104
HaeIII	GGCC	1 cut(s)	93
Hin1II	CATG	1 cut(s)	75
HphI	GGTGA	1 cut(s)	20
Hpy188I	TCNGA	1 cut(s)	67
Hpy188III	TCNNGA	1 cut(s)	177
HpyAV	CCTTC	1 cut(s)	192
HpyF3I	CTNAG	1 cut(s)	64
Hsp92II	CATG	1 cut(s)	75
Kzo9I	GATC	1 cut(s)	120
LmnI	GCTCC	1 cut(s)	169
LpnPI	CCDG	4 cut(s)	8, 59, 110, 193
MaeI	CTAG	1 cut(s)	104
MaeIII	GTNAC	2 cut(s)	8, 149
MalI	GATC	1 cut(s)	122
MboI	GATC	1 cut(s)	120
MboII	GAAGA	2 cut(s)	26, 45
MhlI	GDGCHC	1 cut(s)	174
MlsI	TGGCCA	1 cut(s)	93
MluCI	AATT	2 cut(s)	79, 115
MluNI	TGGCCA	1 cut(s)	93
MnlI	CCTC	3 cut(s)	73, 160, 187
Mox20I	TGGCCA	1 cut(s)	93
MscI	TGGCCA	1 cut(s)	93
MseI	TTAA	1 cut(s)	30
Msp20I	TGGCCA	1 cut(s)	93
NcoI	CCATGG	1 cut(s)	71
NdeII	GATC	1 cut(s)	120
NlaIII	CATG	1 cut(s)	75
NlaIV	GGNNCC	1 cut(s)	180
NmuCI	GTSAC	1 cut(s)	8
PaqCI	CACCTGC	1 cut(s)	105
PpuMI	RGGWCCY	1 cut(s)	179
Psp124BI	GAGCTC	1 cut(s)	174
Psp5II	RGGWCCY	1 cut(s)	179
PspN4I	GGNNCC	1 cut(s)	180
PspPI	GGNCC	1 cut(s)	179
PspPPI	RGGWCCY	1 cut(s)	179
PstNI	CAGNNNCTG	1 cut(s)	213
SacI	GAGCTC	1 cut(s)	174
SaqAI	TTAA	1 cut(s)	30
Sau3AI	GATC	1 cut(s)	120
Sau96I	GGNCC	1 cut(s)	179
SduI	GDGCHC	1 cut(s)	174
SetI	ASST	6 cut(s)	27, 65, 99, 132, 174, 184
SinI	GGWCC	1 cut(s)	179
Sse9I	AATT	2 cut(s)	79, 115
SspMI	CTAG	1 cut(s)	104
SstI	GAGCTC	1 cut(s)	174
StyI	CCWWGG	1 cut(s)	71
TaqI	TCGA	1 cut(s)	119
TasI	AATT	2 cut(s)	79, 115
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TseFI	GTSAC	1 cut(s)	8
Tsp45I	GTSAC	1 cut(s)	8
VpaK11BI	GGWCC	1 cut(s)	179
XapI	RAATTY	2 cut(s)	79, 115
XspI	CTAG	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.