Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0006694

Physical Location & Seq

Genomic Coordinates Forward (+)

8754376 .. 8758625

Gene Structure 4250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG059700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1572 bp

ATGGCGCTGGCAATCCCACCAAATCATCGTCCTCCTCCTCCTCATCATCATCATCTCCCGATTACATTCAACACCAGTAATGGAGACTCTCTCTCACCCAGCCACCACAGCCGTCTTCTCCACTTGTTGAATGAATGTACGTCCATGTCTCAGCTGAAACAAATACACGCTCACACACTGCGCACCACATCCACCACAAACCCACACACCCTCTTCCTCCACAGCCGAATCCTCCATTTCTCATCCCTAACCGATATCCGCTACGCCTTTCGGGTTTTCAATCAGATTGAGAGTCCCAACTCTTTCACCTGGAACACCCTCATCAGGGGTTGCGCTCGAAGCTCTGGGCTCGAAAACCAGGCTATACTACTCTACTGTGAAATGTTATCACAAGGAGTTGCTCTGCCGGATGAGTATACCTTCCCCTTTGTTCTCAGAGCTTGTGCTTACTTGTTTGCCTTATCGGAAGGAAAACAAGCGCATGCTCATGTTGTCAAGCTTGGGTTTGGTTCAGACGTTTATATCGGCAATAGTCTGATTCATCTGTATGCTTCTTGTGGGTGTTTGGATTATGCGCAGATGGTGTTTGAGAAAATGCGTGAGAGAAGCCTTGTGTCGTGGAATGTTATGATTGATTCTTTGGTTGGGGCTGGCGAGTTTGAGAGTTCGCTCAAAGTGTTTGGTCGGATGCAGAAGCTGTTTGAGCCTGATGGGTATACGATGCAGAGTGTTATAAATGCTTGTGCTGGTTTGGGGGCTTTGGATTTGGGAATGTGGGCTCATGCTTATGTGTTGAGGAAGTGTGGTAATGCTGTAGCCAGCAATGTGTTGGTGAACTCTTCGTTGGTTGATATGTATTGCAAATGTGGGTCCTTGGATATGGCTCTCCAAGTGTTCGAGGGAATGCCGAAACGTGATGTGATTACATGGAATTATATGATTCTGGGATTTGCGATGCATGGAAAAGCTGAGGCAGCCTTAAAGTGTTTTGATCGTATGGTTAATATGGAGAGTTGTAAGCCGAATTCCATCACATTCGTTGGTGTTTTGAGTGCATGCAATCACAGAGGCATGGTTAACGAAGGTCGTAAGTTCTTTGATGTGATGGTAAAAGCGTACAAGATTGAACCGCGATTAGAGCACTATGGGTGCCTAGTTGATCTTCTTGCACGTGCTGGTTTCATTGACGAAGCTTTGAATTTGGTGACAACAATGCCCGTGAAGCCTGATGCCGTAATATGGAGGAGTCTTCTTGATGCTTGCAGTAGGCAACAACATGCCAGTATTGAGCTAAGTGAAGAAGTGGCCAGGCAGATCCTTGAGTCTGGAGGAGAGGATGTTTCTAGTGGTGTTTATGTGCTATTGTCAAGAGTCTATGCTTCAGCTAGCCGCTGGAACGACGTCGGATCAATTCGGAGATTGATGACAGAGGAAGGTATAGCAAAAGAGCCTGGCTGTAGTATAATAGACATAGATGGTATTACGCATGAATTTTTTGCTGGGGACACGTCTCATCCTCATAGTAGAGAAATATATCAGGTCTTAGATGCGATGAAGGAAAGACTCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

523

Amino Acids

58.3

Weight (kDa)

6.56

Isoelectric Point (pI)

47.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	99 - 149	2.2e-08	PPR repeat family
PPR_2	PF13041	203 - 249	6.7e-07	PPR repeat family
PPR_2	PF13041	305 - 353	9.2e-10	PPR repeat family
E_motif	PF20431	426 - 489	6.4e-15	E motif
Eplus_motif	PF20430	495 - 516	1.6e-10	E+ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006694)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59720
fragaria_vesca	FvH4_7g03570
malus_domestica	MD13G1081600.v1.1
prunus_persica	Prupe.1G265300_v2.0.a1
pyrus_communis	pycom13g07040
rosa_chinensis	RchiOBHm_Chr1g0325991 RchiOBHm_Chr1g0326081 RchiOBHm_Chr1g0326151
rosa_laevigata	RLG00000030090
rosa_multiflora	Rmu_sc0000028.1_g000011 Rmu_sc0003356.1_g000004 Rmu_sc0011910.1_g000008
rosa_roxburghii	Rroxscaffold_4G00324040
rosa_rugosa	Rorug01G0056800 Rorug01G0056900 Rorug01G0057000 Rorug01G0057100 Rorug01G0057200 Rorug01G0057300
rosa_samantha	Rh1AG073400 Rh1AG074200 Rh1BG059700 Rh1CG073000
rosa_wichuraiana	Rw0G003160 Rw0G020760 Rw1G005950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	734
AatII	GACGTC	1 cut(s)	1404
Acc16I	TGCGCA	2 cut(s)	182, 576
AccB1I	GGYRCC	1 cut(s)	1149
AccI	GTMKAC	2 cut(s)	416, 716
AccII	CGCG	1 cut(s)	1132
AciI	CCGC	3 cut(s)	259, 1130, 1390
AclWI	GGATC	2 cut(s)	1309, 1414
AcoI	YGGCCR	1 cut(s)	1305
AcsI	RAATTY	3 cut(s)	1024, 1198, 1490
AcuI	CTGAAG	1 cut(s)	1365
AcvI	CACGTG	1 cut(s)	1172
AcyI	GRCGYC	1 cut(s)	1401
AfaI	GTAC	2 cut(s)	139, 1118
AfiI	CCNNNNNNNGG	3 cut(s)	324, 325, 1239
AflIII	ACRYGT	1 cut(s)	1506
AgsI	TTSAA	5 cut(s)	70, 130, 280, 1127, 1198
AjiI	CACGTC	1 cut(s)	1509
AjnI	CCWGG	4 cut(s)	308, 357, 1307, 1450
AjuI	GAANNNNNNNTTGG	2 cut(s)	827, 859
AluBI	AGCT	9 cut(s)	154, 342, 440, 499, 697, 968, 1193, 1291, 1385
AluI	AGCT	9 cut(s)	154, 342, 440, 499, 697, 968, 1193, 1291, 1385
Alw21I	GWGCWC	1 cut(s)	1143
Alw26I	GTCTC	3 cut(s)	78, 153, 1515
AlwI	GGATC	2 cut(s)	1309, 1414
AlwNI	CAGNNNCTG	1 cut(s)	697
AoxI	GGCC	1 cut(s)	1305
ApeKI	GCWGC	1 cut(s)	974
ApoI	RAATTY	3 cut(s)	1024, 1198, 1490
AspLEI	GCGC	5 cut(s)	7, 183, 335, 481, 577
AspS9I	GGNCC	1 cut(s)	870
AsuHPI	GGTGA	4 cut(s)	87, 298, 844, 1216
AsuNHI	GCTAGC	1 cut(s)	1385
AvaII	GGWCC	1 cut(s)	870
BalI	TGGCCA	1 cut(s)	1307
BanI	GGYRCC	1 cut(s)	1149
BanII	GRGCYC	2 cut(s)	351, 781
BbrPI	CACGTG	1 cut(s)	1172
BbsI	GAAGAC	2 cut(s)	107, 1241
Bbv12I	GWGCWC	1 cut(s)	1143
BbvCI	CCTCAGC	1 cut(s)	969
BbvI	GCAGC	1 cut(s)	986
BccI	CCATC	5 cut(s)	574, 704, 1037, 1099, 1469
BceAI	ACGGC	2 cut(s)	96, 1217
BciT130I	CCWGG	4 cut(s)	310, 359, 1309, 1452
BcoDI	GTCTC	3 cut(s)	78, 153, 1515
BfaI	CTAG	3 cut(s)	1154, 1344, 1386
BfmI	CTRYAG	2 cut(s)	813, 1456
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	2 cut(s)	975, 1390
BlsI	GCNGC	2 cut(s)	976, 1391
Bme1390I	CCNGG	4 cut(s)	310, 359, 1309, 1452
Bme18I	GGWCC	1 cut(s)	870
BmgBI	CACGTC	1 cut(s)	1509
BmgT120I	GGNCC	1 cut(s)	870
BmiI	GGNNCC	2 cut(s)	871, 1151
BmrFI	CCNGG	4 cut(s)	310, 359, 1309, 1452
BmsI	GCATC	6 cut(s)	678, 711, 945, 1219, 1246, 1537
BmtI	GCTAGC	1 cut(s)	1389
BpiI	GAAGAC	2 cut(s)	107, 1241
BplI	GAGNNNNNCTC	2 cut(s)	75, 107
BpmI	CTGGAG	1 cut(s)	1347
Bpu10I	CCTNAGC	1 cut(s)	969
BpuEI	CTTGAG	1 cut(s)	1340
BsaAI	YACGTR	1 cut(s)	1172
BsaHI	GRCGYC	1 cut(s)	1401
BsaJI	CCNNGG	1 cut(s)	873
BsaXI	ACNNNNNCTCC	2 cut(s)	1323, 1353
Bsc4I	CCNNNNNNNGG	3 cut(s)	324, 325, 1239
Bse1I	ACTGG	2 cut(s)	75, 1281
Bse3DI	GCAATG	1 cut(s)	829
BseBI	CCWGG	4 cut(s)	310, 359, 1309, 1452
BseDI	CCNNGG	1 cut(s)	873
BseGI	GGATG	6 cut(s)	188, 242, 415, 693, 1342, 1513
BseLI	CCNNNNNNNGG	3 cut(s)	324, 325, 1239
BseMI	GCAATG	1 cut(s)	829
BseMII	CTCAG	3 cut(s)	164, 448, 960
BseNI	ACTGG	2 cut(s)	75, 1281
BseRI	GAGGAG	5 cut(s)	24, 27, 30, 1258, 1344
BseXI	GCAGC	1 cut(s)	986
BseYI	CCCAGC	2 cut(s)	98, 1499
Bsh1236I	CGCG	1 cut(s)	1132
BshFI	GGCC	1 cut(s)	1307
BshNI	GGYRCC	1 cut(s)	1149
BsiHKAI	GWGCWC	1 cut(s)	1143
BsiSI	CCGG	1 cut(s)	407
BslFI	GGGAC	2 cut(s)	279, 1517
BslI	CCNNNNNNNGG	3 cut(s)	324, 325, 1239
BsmAI	GTCTC	3 cut(s)	78, 153, 1515
BsmBI	CGTCTC	1 cut(s)	1515
BsmFI	GGGAC	2 cut(s)	279, 1517
BsmI	GAATGC	1 cut(s)	909
BsnI	GGCC	1 cut(s)	1307
Bsp1286I	GDGCHC	3 cut(s)	351, 781, 1143
Bsp143I	GATC	4 cut(s)	991, 1159, 1314, 1406
BspACI	CCGC	3 cut(s)	259, 1130, 1390
BspANI	GGCC	1 cut(s)	1307
BspCNI	CTCAG	3 cut(s)	163, 447, 961
BspFNI	CGCG	1 cut(s)	1132
BspLI	GGNNCC	2 cut(s)	871, 1151
BspOI	GCTAGC	1 cut(s)	1389
BspPI	GGATC	2 cut(s)	1309, 1414
BspT107I	GGYRCC	1 cut(s)	1149
BsrDI	GCAATG	1 cut(s)	829
BsrI	ACTGG	2 cut(s)	75, 1281
BssECI	CCNNGG	1 cut(s)	873
BssMI	GATC	4 cut(s)	991, 1159, 1314, 1406
BssNAI	GTATAC	2 cut(s)	417, 717
BssNI	GRCGYC	1 cut(s)	1401
BssT1I	CCWWGG	1 cut(s)	873
Bst1107I	GTATAC	2 cut(s)	417, 717
Bst2UI	CCWGG	4 cut(s)	310, 359, 1309, 1452
Bst4CI	ACNGT	1 cut(s)	377
Bst6I	CTCTTC	2 cut(s)	218, 844
BstACI	GRCGYC	1 cut(s)	1401
BstBAI	YACGTR	1 cut(s)	1172
BstC8I	GCNNGC	7 cut(s)	9, 483, 652, 820, 1057, 1261, 1387
BstDEI	CTNAG	5 cut(s)	150, 434, 969, 1292, 1543
BstF5I	GGATG	6 cut(s)	188, 242, 415, 693, 1342, 1513
BstFNI	CGCG	1 cut(s)	1132
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	5 cut(s)	7, 183, 335, 481, 577
BstKTI	GATC	4 cut(s)	994, 1162, 1317, 1409
BstMAI	GTCTC	3 cut(s)	78, 153, 1515
BstMBI	GATC	4 cut(s)	991, 1159, 1314, 1406
BstMWI	GCNNNNNNNGC	6 cut(s)	108, 339, 703, 974, 1138, 1222
BstNI	CCWGG	4 cut(s)	310, 359, 1309, 1452
BstNSI	RCATGY	3 cut(s)	485, 1059, 1280
BstSCI	CCNGG	4 cut(s)	308, 357, 1307, 1450
BstSFI	CTRYAG	2 cut(s)	813, 1456
BstUI	CGCG	1 cut(s)	1132
BstV1I	GCAGC	1 cut(s)	986
BstV2I	GAAGAC	2 cut(s)	107, 1241
BstX2I	RGATCY	1 cut(s)	1314
BstYI	RGATCY	1 cut(s)	1314
BstZ17I	GTATAC	2 cut(s)	417, 717
BsuRI	GGCC	1 cut(s)	1307
BtgZI	GCGATG	2 cut(s)	968, 1565
BtrI	CACGTC	1 cut(s)	1509
BtsCI	GGATG	6 cut(s)	188, 242, 415, 693, 1342, 1513
BtsI	GCAGTG	1 cut(s)	176
BtsIMutI	CAGTG	1 cut(s)	176
Cac8I	GCNNGC	7 cut(s)	9, 483, 652, 820, 1057, 1261, 1387
CaiI	CAGNNNCTG	1 cut(s)	697
CfoI	GCGC	5 cut(s)	7, 183, 335, 481, 577
Cfr13I	GGNCC	1 cut(s)	870
Csp6I	GTAC	2 cut(s)	138, 1117
CviQI	GTAC	2 cut(s)	138, 1117
DdeI	CTNAG	5 cut(s)	150, 434, 969, 1292, 1543
DpnI	GATC	4 cut(s)	993, 1161, 1316, 1408
DpnII	GATC	4 cut(s)	991, 1159, 1314, 1406
EaeI	YGGCCR	1 cut(s)	1305
Eam1104I	CTCTTC	2 cut(s)	218, 844
EarI	CTCTTC	2 cut(s)	218, 844
Eco130I	CCWWGG	1 cut(s)	873
Eco24I	GRGCYC	2 cut(s)	351, 781
Eco32I	GATATC	1 cut(s)	256
Eco47I	GGWCC	1 cut(s)	870
Eco57I	CTGAAG	1 cut(s)	1365
Eco72I	CACGTG	1 cut(s)	1172
EcoO109I	RGGNCCY	1 cut(s)	870
EcoRI	GAATTC	1 cut(s)	1024
EcoRII	CCWGG	4 cut(s)	308, 357, 1307, 1450
EcoRV	GATATC	1 cut(s)	256
EcoT14I	CCWWGG	1 cut(s)	873
EcoT22I	ATGCAT	1 cut(s)	960
EcoT38I	GRGCYC	2 cut(s)	351, 781
ErhI	CCWWGG	1 cut(s)	873
Esp3I	CGTCTC	1 cut(s)	1515
FaqI	GGGAC	2 cut(s)	279, 1517
FblI	GTMKAC	2 cut(s)	416, 716
Fnu4HI	GCNGC	2 cut(s)	975, 1390
FokI	GGATG	6 cut(s)	175, 229, 422, 700, 1349, 1500
FriOI	GRGCYC	2 cut(s)	351, 781
Fsp4HI	GCNGC	2 cut(s)	975, 1390
FspBI	CTAG	3 cut(s)	1154, 1344, 1386
FspI	TGCGCA	2 cut(s)	182, 576
GlaI	GCGC	5 cut(s)	6, 182, 334, 480, 576
GluI	GCNGC	2 cut(s)	975, 1390
GsaI	CCCAGC	2 cut(s)	102, 1503
GsuI	CTGGAG	1 cut(s)	1347
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	1307
HapII	CCGG	1 cut(s)	407
HhaI	GCGC	5 cut(s)	7, 183, 335, 481, 577
Hin1I	GRCGYC	1 cut(s)	1401
Hin6I	GCGC	5 cut(s)	5, 181, 333, 479, 575
HinP1I	GCGC	5 cut(s)	5, 181, 333, 479, 575
HincII	GTYRAC	1 cut(s)	1078
HindII	GTYRAC	1 cut(s)	1078
HindIII	AAGCTT	2 cut(s)	497, 1191
HpaI	GTTAAC	1 cut(s)	1078
HpaII	CCGG	1 cut(s)	407
HphI	GGTGA	4 cut(s)	87, 298, 844, 1216
Hpy166II	GTNNAC	4 cut(s)	417, 717, 835, 1078
Hpy188I	TCNGA	8 cut(s)	285, 437, 466, 514, 537, 687, 1406, 1416
Hpy188III	TCNNGA	4 cut(s)	58, 1253, 1326, 1368
Hpy8I	GTNNAC	4 cut(s)	417, 717, 835, 1078
Hpy99I	CGWCG	2 cut(s)	1403, 1406
HpyAV	CCTTC	5 cut(s)	430, 461, 1076, 1427, 1549
HpyCH4III	ACNGT	1 cut(s)	377
HpyCH4IV	ACGT	6 cut(s)	140, 516, 913, 1171, 1401, 1508
HpyCH4V	TGCA	8 cut(s)	691, 724, 861, 958, 1055, 1059, 1169, 1263
HpyF10VI	GCNNNNNNNGC	6 cut(s)	108, 339, 703, 974, 1138, 1222
HpyF3I	CTNAG	5 cut(s)	150, 434, 969, 1292, 1543
HpySE526I	ACGT	6 cut(s)	140, 516, 913, 1171, 1401, 1508
Hsp92I	GRCGYC	1 cut(s)	1401
HspAI	GCGC	5 cut(s)	5, 181, 333, 479, 575
KspAI	GTTAAC	1 cut(s)	1078
Kzo9I	GATC	4 cut(s)	991, 1159, 1314, 1406
Lsp1109I	GCAGC	1 cut(s)	986
LweI	GCATC	6 cut(s)	678, 711, 945, 1219, 1246, 1537
MaeI	CTAG	3 cut(s)	1154, 1344, 1386
MaeII	ACGT	6 cut(s)	140, 516, 913, 1171, 1401, 1508
MaeIII	GTNAC	1 cut(s)	1204
MalI	GATC	4 cut(s)	993, 1161, 1316, 1408
MboI	GATC	4 cut(s)	991, 1159, 1314, 1406
MboII	GAAGA	6 cut(s)	107, 205, 831, 1154, 1241, 1310
MflI	RGATCY	1 cut(s)	1314
MhlI	GDGCHC	3 cut(s)	351, 781, 1143
MlsI	TGGCCA	1 cut(s)	1307
MluCI	AATT	5 cut(s)	931, 1024, 1198, 1410, 1490
MluNI	TGGCCA	1 cut(s)	1307
MlyI	GAGTC	6 cut(s)	80, 301, 1255, 1331, 1380, 1557
MmeI	TCCRAC	2 cut(s)	665, 1384
Mox20I	TGGCCA	1 cut(s)	1307
Mph1103I	ATGCAT	1 cut(s)	960
MscI	TGGCCA	1 cut(s)	1307
MseI	TTAA	3 cut(s)	980, 1002, 1077
MslI	CAYNNNNRTG	3 cut(s)	486, 546, 786
Msp20I	TGGCCA	1 cut(s)	1307
MspA1I	CMGCKG	2 cut(s)	154, 1392
MspI	CCGG	1 cut(s)	407
MspR9I	CCNGG	4 cut(s)	310, 359, 1309, 1452
Mva1269I	GAATGC	1 cut(s)	909
MvaI	CCWGG	4 cut(s)	310, 359, 1309, 1452
MvnI	CGCG	1 cut(s)	1132
MwoI	GCNNNNNNNGC	6 cut(s)	108, 339, 703, 974, 1138, 1222
NdeII	GATC	4 cut(s)	991, 1159, 1314, 1406
NheI	GCTAGC	1 cut(s)	1385
NlaIV	GGNNCC	2 cut(s)	871, 1151
NmuCI	GTSAC	1 cut(s)	1204
NsbI	TGCGCA	2 cut(s)	182, 576
NsiI	ATGCAT	1 cut(s)	960
NspI	RCATGY	3 cut(s)	485, 1059, 1280
PaeI	GCATGC	2 cut(s)	485, 1059
PctI	GAATGC	1 cut(s)	909
PfeI	GAWTC	4 cut(s)	228, 538, 635, 940
PkrI	GCNGC	2 cut(s)	976, 1391
PleI	GAGTC	6 cut(s)	80, 300, 1254, 1330, 1379, 1557
PmaCI	CACGTG	1 cut(s)	1172
PmlI	CACGTG	1 cut(s)	1172
PpsI	GAGTC	6 cut(s)	80, 300, 1254, 1330, 1379, 1557
Ppu21I	YACGTR	1 cut(s)	1172
PpuMI	RGGWCCY	1 cut(s)	870
PsiI	TTATAA	1 cut(s)	734
Psp5II	RGGWCCY	1 cut(s)	870
Psp6I	CCWGG	4 cut(s)	308, 357, 1307, 1450
PspCI	CACGTG	1 cut(s)	1172
PspFI	CCCAGC	2 cut(s)	98, 1499
PspGI	CCWGG	4 cut(s)	308, 357, 1307, 1450
PspN4I	GGNNCC	2 cut(s)	871, 1151
PspPI	GGNCC	1 cut(s)	870
PspPPI	RGGWCCY	1 cut(s)	870
PstNI	CAGNNNCTG	1 cut(s)	697
PsuI	RGATCY	1 cut(s)	1314
PvuII	CAGCTG	1 cut(s)	154
RsaI	GTAC	2 cut(s)	139, 1118
RsaNI	GTAC	2 cut(s)	138, 1117
RseI	CAYNNNNRTG	3 cut(s)	486, 546, 786
SaqAI	TTAA	3 cut(s)	980, 1002, 1077
SatI	GCNGC	2 cut(s)	975, 1390
Sau3AI	GATC	4 cut(s)	991, 1159, 1314, 1406
Sau96I	GGNCC	1 cut(s)	870
SchI	GAGTC	6 cut(s)	80, 301, 1255, 1331, 1380, 1557
ScrFI	CCNGG	4 cut(s)	310, 359, 1309, 1452
SduI	GDGCHC	3 cut(s)	351, 781, 1143
SfaNI	GCATC	6 cut(s)	678, 711, 945, 1219, 1246, 1537
SfcI	CTRYAG	2 cut(s)	813, 1456
SinI	GGWCC	1 cut(s)	870
SmiMI	CAYNNNNRTG	3 cut(s)	486, 546, 786
SmlI	CTYRAG	1 cut(s)	1319
SmoI	CTYRAG	1 cut(s)	1319
SphI	GCATGC	2 cut(s)	485, 1059
Sse9I	AATT	5 cut(s)	931, 1024, 1198, 1410, 1490
SsiI	CCGC	3 cut(s)	259, 1130, 1390
SspMI	CTAG	3 cut(s)	1154, 1344, 1386
StyD4I	CCNGG	4 cut(s)	308, 357, 1307, 1450
StyI	CCWWGG	1 cut(s)	873
TaaI	ACNGT	1 cut(s)	377
TaiI	ACGT	6 cut(s)	143, 519, 916, 1174, 1404, 1511
TaqI	TCGA	3 cut(s)	337, 351, 897
TasI	AATT	5 cut(s)	931, 1024, 1198, 1410, 1490
TauI	GCSGC	1 cut(s)	1392
TfiI	GAWTC	4 cut(s)	228, 538, 635, 940
Tru1I	TTAA	3 cut(s)	980, 1002, 1077
Tru9I	TTAA	3 cut(s)	980, 1002, 1077
TscAI	CASTG	1 cut(s)	183
TseFI	GTSAC	1 cut(s)	1204
TseI	GCWGC	1 cut(s)	974
Tsp45I	GTSAC	1 cut(s)	1204
TspDTI	ATGAA	5 cut(s)	147, 530, 1171, 1503, 1568
TspRI	CASTG	1 cut(s)	183
VpaK11BI	GGWCC	1 cut(s)	870
XapI	RAATTY	3 cut(s)	1024, 1198, 1490
XceI	RCATGY	3 cut(s)	485, 1059, 1280
XcmI	CCANNNNNNNNNTGG	1 cut(s)	826
XmiI	GTMKAC	2 cut(s)	416, 716
XspI	CTAG	3 cut(s)	1154, 1344, 1386
ZraI	GACGTC	1 cut(s)	1402
Zsp2I	ATGCAT	1 cut(s)	960

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.