Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006694

Physical Location & Seq

Genomic Coordinates Forward (+)

9366931 .. 9376602

Gene Structure 9672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0056800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGCAACTGATACCATCAGATGATGGATTCCAAGCAACCCCTATGCTTCAGATTCTGGATCTAAGTGGTAATGCAGCTTCGTCACTAGAGCACCCTATATTTTCTAGCTTACAGTATCTGCAAGAGCTTTATCTGAGACGAATGCAGCTACACGAAGTCCCATCAGATATCTTGAGTTTGCAGCAACTGCGGATCCTAGACTTCAGCCAAAATTCCTTGCAGTCGGTTCCAGTGGAGTTCAAAAATTTTACTTCACTCACTGAGCTAGGCCTATCTGACAACAACATATCAACACTTCCTCCAAAATTGGTCAATATATTACCTGGTTTGAAGGAAGGGCGTGAGAAAATGTCAAAGAAGATTCCCGATTCTGCTATAATATTCATGAACGATAAAGAGGACACAGTTTCAGTGTCCTTAAATGGTGTTTTTCTAGTAGTGAGAGGAGAACGCAGGGAAGAGAGTGAGGCGAGAAGAAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

161

Amino Acids

18.17

Weight (kDa)

5.44

Isoelectric Point (pI)

63.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	16 - 106	5.8e-09	Leucine-rich repeat region
LRR_8	PF13855	39 - 96	7.8e-10	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006694)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59720
fragaria_vesca	FvH4_7g03570
malus_domestica	MD13G1081600.v1.1
prunus_persica	Prupe.1G265300_v2.0.a1
pyrus_communis	pycom13g07040
rosa_chinensis	RchiOBHm_Chr1g0325991 RchiOBHm_Chr1g0326081 RchiOBHm_Chr1g0326151
rosa_laevigata	RLG00000030090
rosa_multiflora	Rmu_sc0000028.1_g000011 Rmu_sc0003356.1_g000004 Rmu_sc0011910.1_g000008
rosa_roxburghii	Rroxscaffold_4G00324040
rosa_rugosa	Rorug01G0056800 Rorug01G0056900 Rorug01G0057000 Rorug01G0057100 Rorug01G0057200 Rorug01G0057300
rosa_samantha	Rh1AG073400 Rh1AG074200 Rh1BG059700 Rh1CG073000
rosa_wichuraiana	Rw0G003160 Rw0G020760 Rw1G005950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	190
AclWI	GGATC	3 cut(s)	66, 187, 200
AcsI	RAATTY	2 cut(s)	211, 244
AcuI	CTGAAG	2 cut(s)	32, 187
AgsI	TTSAA	2 cut(s)	241, 331
AjnI	CCWGG	1 cut(s)	322
AluBI	AGCT	5 cut(s)	77, 108, 127, 148, 265
AluI	AGCT	5 cut(s)	77, 108, 127, 148, 265
Alw21I	GWGCWC	1 cut(s)	93
Alw26I	GTCTC	1 cut(s)	130
AlwI	GGATC	3 cut(s)	66, 187, 200
AlwNI	CAGNNNCTG	3 cut(s)	55, 118, 187
AoxI	GGCC	1 cut(s)	268
ApeKI	GCWGC	3 cut(s)	74, 145, 181
ApoI	RAATTY	2 cut(s)	211, 244
BamHI	GGATCC	1 cut(s)	192
BarI	GAAGNNNNNNTAC	2 cut(s)	61, 93
Bbv12I	GWGCWC	1 cut(s)	93
BbvI	GCAGC	3 cut(s)	86, 157, 193
BccI	CCATC	3 cut(s)	17, 22, 169
BciT130I	CCWGG	1 cut(s)	324
BcoDI	GTCTC	1 cut(s)	130
BfaI	CTAG	5 cut(s)	86, 105, 197, 266, 434
BisI	GCNGC	3 cut(s)	75, 146, 182
BlsI	GCNGC	3 cut(s)	76, 147, 183
Bme1390I	CCNGG	1 cut(s)	324
BmiI	GGNNCC	2 cut(s)	194, 228
BmrFI	CCNGG	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	193
BsaXI	ACNNNNNCTCC	2 cut(s)	283, 313
Bse1I	ACTGG	1 cut(s)	230
BseBI	CCWGG	1 cut(s)	324
BseMII	CTCAG	2 cut(s)	125, 252
BseNI	ACTGG	1 cut(s)	230
BseRI	GAGGAG	1 cut(s)	459
BseXI	GCAGC	3 cut(s)	86, 157, 193
BshFI	GGCC	1 cut(s)	270
BsiHKAI	GWGCWC	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	143
BsmAI	GTCTC	1 cut(s)	130
BsmBI	CGTCTC	1 cut(s)	130
BsmFI	GGGAC	1 cut(s)	143
BsmI	GAATGC	1 cut(s)	147
BsnI	GGCC	1 cut(s)	270
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp143I	GATC	2 cut(s)	58, 192
BspACI	CCGC	1 cut(s)	190
BspANI	GGCC	1 cut(s)	270
BspCNI	CTCAG	2 cut(s)	126, 253
BspHI	TCATGA	1 cut(s)	384
BspLI	GGNNCC	2 cut(s)	194, 228
BspPI	GGATC	3 cut(s)	66, 187, 200
BsrI	ACTGG	1 cut(s)	230
BssMI	GATC	2 cut(s)	58, 192
Bst2UI	CCWGG	1 cut(s)	324
Bst4CI	ACNGT	2 cut(s)	114, 406
Bst6I	CTCTTC	1 cut(s)	453
BstAPI	GCANNNNNTGC	1 cut(s)	187
BstDEI	CTNAG	3 cut(s)	62, 134, 261
BstKTI	GATC	2 cut(s)	61, 195
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	2 cut(s)	58, 192
BstMWI	GCNNNNNNNGC	1 cut(s)	187
BstNI	CCWGG	1 cut(s)	324
BstSCI	CCNGG	1 cut(s)	322
BstV1I	GCAGC	3 cut(s)	86, 157, 193
BstX2I	RGATCY	2 cut(s)	58, 192
BstYI	RGATCY	2 cut(s)	58, 192
BsuRI	GGCC	1 cut(s)	270
BtsIMutI	CAGTG	3 cut(s)	237, 258, 417
CaiI	CAGNNNCTG	3 cut(s)	55, 118, 187
CciI	TCATGA	1 cut(s)	384
CsiI	ACCWGGT	1 cut(s)	322
CviAII	CATG	1 cut(s)	385
CviJI	RGCY	7 cut(s)	77, 108, 127, 148, 207, 265, 270
CviKI_1	RGCY	7 cut(s)	77, 108, 127, 148, 207, 265, 270
DdeI	CTNAG	3 cut(s)	62, 134, 261
DpnI	GATC	2 cut(s)	60, 194
DpnII	GATC	2 cut(s)	58, 192
Eam1104I	CTCTTC	1 cut(s)	453
EarI	CTCTTC	1 cut(s)	453
Eco147I	AGGCCT	1 cut(s)	270
Eco32I	GATATC	1 cut(s)	169
Eco57I	CTGAAG	2 cut(s)	32, 187
EcoRII	CCWGG	1 cut(s)	322
EcoRV	GATATC	1 cut(s)	169
Esp3I	CGTCTC	1 cut(s)	130
FaeI	CATG	1 cut(s)	388
FaiI	YATR	6 cut(s)	44, 98, 287, 317, 377, 386
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	1 cut(s)	384
Fnu4HI	GCNGC	3 cut(s)	75, 146, 182
Fsp4HI	GCNGC	3 cut(s)	75, 146, 182
FspBI	CTAG	5 cut(s)	86, 105, 197, 266, 434
GluI	GCNGC	3 cut(s)	75, 146, 182
HaeIII	GGCC	1 cut(s)	270
Hin1II	CATG	1 cut(s)	388
HinfI	GANTC	4 cut(s)	27, 52, 361, 368
Hpy188I	TCNGA	5 cut(s)	19, 51, 135, 166, 277
Hpy188III	TCNNGA	4 cut(s)	56, 172, 365, 385
HpyAV	CCTTC	2 cut(s)	325, 329
HpyCH4III	ACNGT	2 cut(s)	114, 406
HpyCH4V	TGCA	6 cut(s)	4, 74, 121, 145, 181, 220
HpyF10VI	GCNNNNNNNGC	1 cut(s)	187
HpyF3I	CTNAG	3 cut(s)	62, 134, 261
Hsp92II	CATG	1 cut(s)	388
Kzo9I	GATC	2 cut(s)	58, 192
LpnPI	CCDG	5 cut(s)	41, 243, 309, 336, 439
Lsp1109I	GCAGC	3 cut(s)	86, 157, 193
MabI	ACCWGGT	1 cut(s)	322
MaeI	CTAG	5 cut(s)	86, 105, 197, 266, 434
MaeIII	GTNAC	1 cut(s)	81
MalI	GATC	2 cut(s)	60, 194
MboI	GATC	2 cut(s)	58, 192
MboII	GAAGA	3 cut(s)	370, 470, 486
MflI	RGATCY	2 cut(s)	58, 192
MhlI	GDGCHC	1 cut(s)	93
MluCI	AATT	3 cut(s)	211, 244, 305
MnlI	CCTC	4 cut(s)	309, 391, 437, 460
MseI	TTAA	1 cut(s)	419
MspR9I	CCNGG	1 cut(s)	324
Mva1269I	GAATGC	1 cut(s)	147
MvaI	CCWGG	1 cut(s)	324
MwoI	GCNNNNNNNGC	1 cut(s)	187
NdeII	GATC	2 cut(s)	58, 192
NlaIII	CATG	1 cut(s)	388
NlaIV	GGNNCC	2 cut(s)	194, 228
NmuCI	GTSAC	1 cut(s)	81
PagI	TCATGA	1 cut(s)	384
PceI	AGGCCT	1 cut(s)	270
PctI	GAATGC	1 cut(s)	147
PfeI	GAWTC	4 cut(s)	27, 52, 361, 368
PkrI	GCNGC	3 cut(s)	76, 147, 183
Psp6I	CCWGG	1 cut(s)	322
PspGI	CCWGG	1 cut(s)	322
PspN4I	GGNNCC	2 cut(s)	194, 228
PstNI	CAGNNNCTG	3 cut(s)	55, 118, 187
PsuI	RGATCY	2 cut(s)	58, 192
SaqAI	TTAA	1 cut(s)	419
SatI	GCNGC	3 cut(s)	75, 146, 182
Sau3AI	GATC	2 cut(s)	58, 192
ScrFI	CCNGG	1 cut(s)	324
SduI	GDGCHC	1 cut(s)	93
SetI	ASST	6 cut(s)	79, 110, 129, 150, 267, 325
SexAI	ACCWGGT	1 cut(s)	322
SmlI	CTYRAG	1 cut(s)	172
SmoI	CTYRAG	1 cut(s)	172
Sse9I	AATT	3 cut(s)	211, 244, 305
SseBI	AGGCCT	1 cut(s)	270
SsiI	CCGC	1 cut(s)	190
SspI	AATATT	1 cut(s)	381
SspMI	CTAG	5 cut(s)	86, 105, 197, 266, 434
StuI	AGGCCT	1 cut(s)	270
StyD4I	CCNGG	1 cut(s)	322
TaaI	ACNGT	2 cut(s)	114, 406
TasI	AATT	3 cut(s)	211, 244, 305
TfiI	GAWTC	4 cut(s)	27, 52, 361, 368
Tru1I	TTAA	1 cut(s)	419
Tru9I	TTAA	1 cut(s)	419
TscAI	CASTG	3 cut(s)	237, 265, 417
TseFI	GTSAC	1 cut(s)	81
TseI	GCWGC	3 cut(s)	74, 145, 181
Tsp45I	GTSAC	1 cut(s)	81
TspDTI	ATGAA	2 cut(s)	373, 401
TspRI	CASTG	3 cut(s)	237, 265, 417
XapI	RAATTY	2 cut(s)	211, 244
XspI	CTAG	5 cut(s)	86, 105, 197, 266, 434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.