Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011910.1

Orthogroup ID

OG0006694

Physical Location & Seq

Genomic Coordinates Forward (+)

36248 .. 37719

Gene Structure 1472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011910.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

atggcactggcaatcccaccaaatcatcgtcatcatcatctccctgttacagtcaacatcaatgatggagactctcagtcccccagccaccacagccgtcttctccacttgttgaatgaatgtacggacatgtctcagctgaaacaaatacacgctcacacactgcgcaccacatccaccacaaacccacacaccctctttctccacagccgaatcctccacttctcatccttaaccgatatccgctacgcctttcgggttttcaatcagattgagagtcccaactctttcacctggaacacgctcatcaggggttgtgctcgaagctctgggctcgaaacccaggctacactactctactatgaaatgttatcacaaggagttgctctgcccgatcagtatacctttccctttgttctcagagcttgtgcttacttgtttgccttatcggaacgaaaacaagcgcatgctcatgttgtcaagcttgggtttggttccgacgtttatattggcaatagtctgattcatctgtatgcttcttgtgggtgtttggattacgcacggaaggtgtttgagaaaatgcgtgagagaagcgttgtgtcgtggaatgttatgattgattctttggttggggctggcgagtttgagagttcgctgaaagtgtttgagtattataaatgcttgtgctggttgggggctttggatttcggaatgtgggctcatgcttatgtgttgaaaaagtgtgataatgccgtaggcagcaatgtgctggtgaactcttcgttggttgatatgtattgcaaatgtgggtccttggatatggctcttcaagtgtttgagggaatgaataaacgtgatgtgattacatggaattatatgattctgggatttgccatgcatggaagagctgaggcagctttaaagtgttttgatcgtatggttaatatggagagttgtaagccaaattccatcacattcgttggtgttttgagtgcttgcaatcatagaggcatggttaacgaaggccgtaagttctttgatatgatggtagaagagtacaagattgaaccacgattagagcattacgggtgcctagttgatcttcttgcacgtgctggtttcattgatgaagctttgaatttggtgacaacaatgcctatgaagcctgatgctgtaatatggaggagtcttcttgattcttgcagtaggcaacagcatgccagtattgagctaagtgaagaagtggccaggcagattcttgagcctggaggagaggatgtttctagtggtgtttatgtgttattgtcaagagtctatgcttcagctagccgctggaacgacgtcggatcaattcggagattgatgacagaggaaggtatatcaaaagggcctggctgtagtataatagacagatggtattacgcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

475

Amino Acids

53.64

Weight (kDa)

6.7

Isoelectric Point (pI)

53.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006694)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59720
fragaria_vesca	FvH4_7g03570
malus_domestica	MD13G1081600.v1.1
prunus_persica	Prupe.1G265300_v2.0.a1
pyrus_communis	pycom13g07040
rosa_chinensis	RchiOBHm_Chr1g0325991 RchiOBHm_Chr1g0326081 RchiOBHm_Chr1g0326151
rosa_laevigata	RLG00000030090
rosa_multiflora	Rmu_sc0000028.1_g000011 Rmu_sc0003356.1_g000004 Rmu_sc0011910.1_g000008
rosa_roxburghii	Rroxscaffold_4G00324040
rosa_rugosa	Rorug01G0056800 Rorug01G0056900 Rorug01G0057000 Rorug01G0057100 Rorug01G0057200 Rorug01G0057300
rosa_samantha	Rh1AG073400 Rh1AG074200 Rh1BG059700 Rh1CG073000
rosa_wichuraiana	Rw0G003160 Rw0G020760 Rw1G005950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	675
AatII	GACGTC	1 cut(s)	1344
Acc16I	TGCGCA	1 cut(s)	167
AccB1I	GGYRCC	1 cut(s)	1089
AccI	GTMKAC	1 cut(s)	401
AciI	CCGC	2 cut(s)	244, 1330
AclWI	GGATC	1 cut(s)	1354
AcoI	YGGCCR	1 cut(s)	1245
AcsI	RAATTY	2 cut(s)	964, 1138
AcuI	CTGAAG	1 cut(s)	1305
AcvI	CACGTG	1 cut(s)	1112
AcyI	GRCGYC	1 cut(s)	1341
AfaI	GTAC	2 cut(s)	124, 1058
AflIII	ACRYGT	1 cut(s)	129
AgsI	TTSAA	6 cut(s)	115, 265, 736, 830, 1067, 1138
AhdI	GACNNNNNGTC	1 cut(s)	76
AjnI	CCWGG	5 cut(s)	293, 342, 1247, 1264, 1390
AjuI	GAANNNNNNNTTGG	2 cut(s)	767, 799
AluBI	AGCT	9 cut(s)	139, 327, 425, 484, 908, 917, 1133, 1231, 1325
AluI	AGCT	9 cut(s)	139, 327, 425, 484, 908, 917, 1133, 1231, 1325
Alw21I	GWGCWC	1 cut(s)	322
Alw26I	GTCTC	2 cut(s)	63, 138
AlwI	GGATC	1 cut(s)	1354
AoxI	GGCC	3 cut(s)	1024, 1245, 1388
ApeKI	GCWGC	2 cut(s)	759, 914
ApoI	RAATTY	2 cut(s)	964, 1138
AspLEI	GCGC	2 cut(s)	168, 466
AspS9I	GGNCC	2 cut(s)	810, 1388
AsuHPI	GGTGA	3 cut(s)	283, 784, 1156
AsuNHI	GCTAGC	1 cut(s)	1325
AvaII	GGWCC	1 cut(s)	810
BalI	TGGCCA	1 cut(s)	1247
BanI	GGYRCC	1 cut(s)	1089
BanII	GRGCYC	2 cut(s)	336, 721
BbrPI	CACGTG	1 cut(s)	1112
BbsI	GAAGAC	2 cut(s)	92, 1181
Bbv12I	GWGCWC	1 cut(s)	322
BbvCI	CCTCAGC	1 cut(s)	909
BbvI	GCAGC	2 cut(s)	771, 926
BccI	CCATC	4 cut(s)	59, 977, 1039, 1407
BceAI	ACGGC	3 cut(s)	81, 737, 1011
BciT130I	CCWGG	5 cut(s)	295, 344, 1249, 1266, 1392
BcoDI	GTCTC	2 cut(s)	63, 138
BfaI	CTAG	3 cut(s)	1094, 1284, 1326
BfmI	CTRYAG	1 cut(s)	1396
BisI	GCNGC	3 cut(s)	760, 915, 1330
BlsI	GCNGC	3 cut(s)	761, 916, 1331
Bme1390I	CCNGG	5 cut(s)	295, 344, 1249, 1266, 1392
Bme18I	GGWCC	1 cut(s)	810
BmeRI	GACNNNNNGTC	1 cut(s)	76
BmgT120I	GGNCC	2 cut(s)	810, 1388
BmiI	GGNNCC	3 cut(s)	496, 811, 1091
BmrFI	CCNGG	5 cut(s)	295, 344, 1249, 1266, 1392
BmsI	GCATC	1 cut(s)	1159
BmtI	GCTAGC	1 cut(s)	1329
BpiI	GAAGAC	2 cut(s)	92, 1181
BpmI	CTGGAG	1 cut(s)	1287
Bpu10I	CCTNAGC	1 cut(s)	909
BpuEI	CTTGAG	1 cut(s)	1280
BsaAI	YACGTR	1 cut(s)	1112
BsaHI	GRCGYC	1 cut(s)	1341
BsaJI	CCNNGG	2 cut(s)	342, 813
BsaXI	ACNNNNNCTCC	2 cut(s)	1263, 1293
Bse1I	ACTGG	2 cut(s)	12, 1221
Bse3DI	GCAATG	1 cut(s)	769
BseBI	CCWGG	5 cut(s)	295, 344, 1249, 1266, 1392
BseDI	CCNNGG	2 cut(s)	342, 813
BseGI	GGATG	3 cut(s)	173, 227, 1282
BseMI	GCAATG	1 cut(s)	769
BseMII	CTCAG	4 cut(s)	89, 149, 433, 900
BseNI	ACTGG	2 cut(s)	12, 1221
BseRI	GAGGAG	2 cut(s)	1198, 1284
BseXI	GCAGC	2 cut(s)	771, 926
BseYI	CCCAGC	1 cut(s)	83
BshFI	GGCC	3 cut(s)	1026, 1247, 1390
BshNI	GGYRCC	1 cut(s)	1089
BsiHKAI	GWGCWC	1 cut(s)	322
BslFI	GGGAC	2 cut(s)	64, 264
BsmAI	GTCTC	2 cut(s)	63, 138
BsmFI	GGGAC	2 cut(s)	64, 264
BsnI	GGCC	3 cut(s)	1026, 1247, 1390
Bsp1286I	GDGCHC	3 cut(s)	322, 336, 721
Bsp143I	GATC	4 cut(s)	394, 931, 1099, 1346
BspACI	CCGC	2 cut(s)	244, 1330
BspANI	GGCC	3 cut(s)	1026, 1247, 1390
BspCNI	CTCAG	4 cut(s)	88, 148, 432, 901
BspLI	GGNNCC	3 cut(s)	496, 811, 1091
BspOI	GCTAGC	1 cut(s)	1329
BspPI	GGATC	1 cut(s)	1354
BspQI	GCTCTTC	2 cut(s)	831, 898
BspT107I	GGYRCC	1 cut(s)	1089
BsrDI	GCAATG	1 cut(s)	769
BsrI	ACTGG	2 cut(s)	12, 1221
BssECI	CCNNGG	2 cut(s)	342, 813
BssMI	GATC	4 cut(s)	394, 931, 1099, 1346
BssNAI	GTATAC	1 cut(s)	402
BssNI	GRCGYC	1 cut(s)	1341
BssT1I	CCWWGG	1 cut(s)	813
Bst1107I	GTATAC	1 cut(s)	402
Bst2UI	CCWGG	5 cut(s)	295, 344, 1249, 1266, 1392
Bst4CI	ACNGT	1 cut(s)	52
Bst6I	CTCTTC	4 cut(s)	784, 831, 898, 1047
BstACI	GRCGYC	1 cut(s)	1341
BstBAI	YACGTR	1 cut(s)	1112
BstC8I	GCNNGC	5 cut(s)	468, 637, 997, 1218, 1327
BstDEI	CTNAG	5 cut(s)	75, 135, 419, 909, 1232
BstF5I	GGATG	3 cut(s)	173, 227, 1282
BstHHI	GCGC	2 cut(s)	168, 466
BstKTI	GATC	4 cut(s)	397, 934, 1102, 1349
BstMAI	GTCTC	2 cut(s)	63, 138
BstMBI	GATC	4 cut(s)	394, 931, 1099, 1346
BstMWI	GCNNNNNNNGC	3 cut(s)	93, 914, 1162
BstNI	CCWGG	5 cut(s)	295, 344, 1249, 1266, 1392
BstNSI	RCATGY	3 cut(s)	133, 470, 1220
BstSCI	CCNGG	5 cut(s)	293, 342, 1247, 1264, 1390
BstSFI	CTRYAG	1 cut(s)	1396
BstV1I	GCAGC	2 cut(s)	771, 926
BstV2I	GAAGAC	2 cut(s)	92, 1181
BstZ17I	GTATAC	1 cut(s)	402
BsuRI	GGCC	3 cut(s)	1026, 1247, 1390
BtsCI	GGATG	3 cut(s)	173, 227, 1282
BtsI	GCAGTG	1 cut(s)	161
BtsIMutI	CAGTG	2 cut(s)	5, 161
Cac8I	GCNNGC	5 cut(s)	468, 637, 997, 1218, 1327
CfoI	GCGC	2 cut(s)	168, 466
Cfr13I	GGNCC	2 cut(s)	810, 1388
Csp6I	GTAC	2 cut(s)	123, 1057
CviQI	GTAC	2 cut(s)	123, 1057
DdeI	CTNAG	5 cut(s)	75, 135, 419, 909, 1232
DpnI	GATC	4 cut(s)	396, 933, 1101, 1348
DpnII	GATC	4 cut(s)	394, 931, 1099, 1346
DraI	TTTAAA	1 cut(s)	921
DriI	GACNNNNNGTC	1 cut(s)	76
EaeI	YGGCCR	1 cut(s)	1245
Eam1104I	CTCTTC	4 cut(s)	784, 831, 898, 1047
Eam1105I	GACNNNNNGTC	1 cut(s)	76
EarI	CTCTTC	4 cut(s)	784, 831, 898, 1047
Eco130I	CCWWGG	1 cut(s)	813
Eco24I	GRGCYC	2 cut(s)	336, 721
Eco32I	GATATC	1 cut(s)	241
Eco47I	GGWCC	1 cut(s)	810
Eco57I	CTGAAG	1 cut(s)	1305
Eco72I	CACGTG	1 cut(s)	1112
EcoO109I	RGGNCCY	2 cut(s)	810, 1388
EcoRII	CCWGG	5 cut(s)	293, 342, 1247, 1264, 1390
EcoRV	GATATC	1 cut(s)	241
EcoT14I	CCWWGG	1 cut(s)	813
EcoT22I	ATGCAT	1 cut(s)	900
EcoT38I	GRGCYC	2 cut(s)	336, 721
ErhI	CCWWGG	1 cut(s)	813
FaqI	GGGAC	2 cut(s)	64, 264
FblI	GTMKAC	1 cut(s)	401
Fnu4HI	GCNGC	3 cut(s)	760, 915, 1330
FokI	GGATG	3 cut(s)	160, 214, 1289
FriOI	GRGCYC	2 cut(s)	336, 721
Fsp4HI	GCNGC	3 cut(s)	760, 915, 1330
FspBI	CTAG	3 cut(s)	1094, 1284, 1326
FspI	TGCGCA	1 cut(s)	167
GlaI	GCGC	2 cut(s)	167, 465
GluI	GCNGC	3 cut(s)	760, 915, 1330
GsaI	CCCAGC	1 cut(s)	87
GsuI	CTGGAG	1 cut(s)	1287
HaeIII	GGCC	3 cut(s)	1026, 1247, 1390
HhaI	GCGC	2 cut(s)	168, 466
Hin1I	GRCGYC	1 cut(s)	1341
Hin6I	GCGC	2 cut(s)	166, 464
HinP1I	GCGC	2 cut(s)	166, 464
HincII	GTYRAC	2 cut(s)	55, 1018
HindII	GTYRAC	2 cut(s)	55, 1018
HindIII	AAGCTT	2 cut(s)	482, 1131
HpaI	GTTAAC	1 cut(s)	1018
HphI	GGTGA	3 cut(s)	283, 784, 1156
Hpy166II	GTNNAC	4 cut(s)	55, 402, 775, 1018
Hpy188I	TCNGA	8 cut(s)	270, 422, 451, 499, 522, 710, 1346, 1356
Hpy188III	TCNNGA	3 cut(s)	1193, 1259, 1308
Hpy8I	GTNNAC	4 cut(s)	55, 402, 775, 1018
Hpy99I	CGWCG	3 cut(s)	503, 1343, 1346
HpyAV	CCTTC	3 cut(s)	559, 1016, 1367
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4IV	ACGT	4 cut(s)	501, 853, 1111, 1341
HpyCH4V	TGCA	5 cut(s)	801, 898, 999, 1109, 1203
HpyF10VI	GCNNNNNNNGC	3 cut(s)	93, 914, 1162
HpyF3I	CTNAG	5 cut(s)	75, 135, 419, 909, 1232
HpySE526I	ACGT	4 cut(s)	501, 853, 1111, 1341
Hsp92I	GRCGYC	1 cut(s)	1341
HspAI	GCGC	2 cut(s)	166, 464
KspAI	GTTAAC	1 cut(s)	1018
Kzo9I	GATC	4 cut(s)	394, 931, 1099, 1346
LguI	GCTCTTC	2 cut(s)	831, 898
Lsp1109I	GCAGC	2 cut(s)	771, 926
LweI	GCATC	1 cut(s)	1159
MaeI	CTAG	3 cut(s)	1094, 1284, 1326
MaeII	ACGT	4 cut(s)	501, 853, 1111, 1341
MaeIII	GTNAC	2 cut(s)	46, 1144
MalI	GATC	4 cut(s)	396, 933, 1101, 1348
MboI	GATC	4 cut(s)	394, 931, 1099, 1346
MboII	GAAGA	8 cut(s)	92, 771, 818, 915, 1064, 1094, 1181, 1250
MhlI	GDGCHC	3 cut(s)	322, 336, 721
MlsI	TGGCCA	1 cut(s)	1247
MluCI	AATT	4 cut(s)	871, 964, 1138, 1350
MluNI	TGGCCA	1 cut(s)	1247
MlyI	GAGTC	4 cut(s)	65, 286, 1195, 1320
MmeI	TCCRAC	2 cut(s)	522, 1324
MnlI	CCTC	9 cut(s)	206, 227, 832, 904, 1001, 1176, 1262, 1267, 1363
Mox20I	TGGCCA	1 cut(s)	1247
Mph1103I	ATGCAT	1 cut(s)	900
MscI	TGGCCA	1 cut(s)	1247
MseI	TTAA	4 cut(s)	233, 920, 942, 1017
MslI	CAYNNNNRTG	3 cut(s)	471, 531, 726
Msp20I	TGGCCA	1 cut(s)	1247
MspA1I	CMGCKG	2 cut(s)	139, 1332
MspR9I	CCNGG	5 cut(s)	295, 344, 1249, 1266, 1392
MvaI	CCWGG	5 cut(s)	295, 344, 1249, 1266, 1392
MwoI	GCNNNNNNNGC	3 cut(s)	93, 914, 1162
NdeII	GATC	4 cut(s)	394, 931, 1099, 1346
NheI	GCTAGC	1 cut(s)	1325
NlaIV	GGNNCC	3 cut(s)	496, 811, 1091
NmuCI	GTSAC	1 cut(s)	1144
NsbI	TGCGCA	1 cut(s)	167
NsiI	ATGCAT	1 cut(s)	900
NspI	RCATGY	3 cut(s)	133, 470, 1220
PaeI	GCATGC	2 cut(s)	470, 1220
PciI	ACATGT	1 cut(s)	129
PciSI	GCTCTTC	2 cut(s)	831, 898
PfeI	GAWTC	6 cut(s)	213, 523, 620, 880, 1196, 1255
PkrI	GCNGC	3 cut(s)	761, 916, 1331
PleI	GAGTC	4 cut(s)	65, 285, 1194, 1319
PmaCI	CACGTG	1 cut(s)	1112
PmlI	CACGTG	1 cut(s)	1112
PpsI	GAGTC	4 cut(s)	65, 285, 1194, 1319
Ppu21I	YACGTR	1 cut(s)	1112
PpuMI	RGGWCCY	1 cut(s)	810
PscI	ACATGT	1 cut(s)	129
PsiI	TTATAA	1 cut(s)	675
Psp5II	RGGWCCY	1 cut(s)	810
Psp6I	CCWGG	5 cut(s)	293, 342, 1247, 1264, 1390
PspCI	CACGTG	1 cut(s)	1112
PspFI	CCCAGC	1 cut(s)	83
PspGI	CCWGG	5 cut(s)	293, 342, 1247, 1264, 1390
PspN4I	GGNNCC	3 cut(s)	496, 811, 1091
PspPI	GGNCC	2 cut(s)	810, 1388
PspPPI	RGGWCCY	1 cut(s)	810
PvuII	CAGCTG	1 cut(s)	139
RsaI	GTAC	2 cut(s)	124, 1058
RsaNI	GTAC	2 cut(s)	123, 1057
RseI	CAYNNNNRTG	3 cut(s)	471, 531, 726
SapI	GCTCTTC	2 cut(s)	831, 898
SaqAI	TTAA	4 cut(s)	233, 920, 942, 1017
SatI	GCNGC	3 cut(s)	760, 915, 1330
Sau3AI	GATC	4 cut(s)	394, 931, 1099, 1346
Sau96I	GGNCC	2 cut(s)	810, 1388
SchI	GAGTC	4 cut(s)	65, 286, 1195, 1320
ScrFI	CCNGG	5 cut(s)	295, 344, 1249, 1266, 1392
SduI	GDGCHC	3 cut(s)	322, 336, 721
SfaNI	GCATC	1 cut(s)	1159
SfcI	CTRYAG	1 cut(s)	1396
SinI	GGWCC	1 cut(s)	810
SmiMI	CAYNNNNRTG	3 cut(s)	471, 531, 726
SmlI	CTYRAG	1 cut(s)	1259
SmoI	CTYRAG	1 cut(s)	1259
SphI	GCATGC	2 cut(s)	470, 1220
Sse9I	AATT	4 cut(s)	871, 964, 1138, 1350
SsiI	CCGC	2 cut(s)	244, 1330
SspMI	CTAG	3 cut(s)	1094, 1284, 1326
StyD4I	CCNGG	5 cut(s)	293, 342, 1247, 1264, 1390
StyI	CCWWGG	1 cut(s)	813
TaaI	ACNGT	1 cut(s)	52
TaiI	ACGT	4 cut(s)	504, 856, 1114, 1344
TaqI	TCGA	2 cut(s)	322, 336
TasI	AATT	4 cut(s)	871, 964, 1138, 1350
TatI	WGTACW	1 cut(s)	1056
TauI	GCSGC	1 cut(s)	1332
TfiI	GAWTC	6 cut(s)	213, 523, 620, 880, 1196, 1255
Tru1I	TTAA	4 cut(s)	233, 920, 942, 1017
Tru9I	TTAA	4 cut(s)	233, 920, 942, 1017
TscAI	CASTG	2 cut(s)	12, 168
TseFI	GTSAC	1 cut(s)	1144
TseI	GCWGC	2 cut(s)	759, 914
Tsp45I	GTSAC	1 cut(s)	1144
TspDTI	ATGAA	7 cut(s)	132, 378, 515, 860, 1111, 1143, 1175
TspGWI	ACGGA	2 cut(s)	140, 577
TspRI	CASTG	2 cut(s)	12, 168
VpaK11BI	GGWCC	1 cut(s)	810
XapI	RAATTY	2 cut(s)	964, 1138
XceI	RCATGY	3 cut(s)	133, 470, 1220
XmiI	GTMKAC	1 cut(s)	401
XspI	CTAG	3 cut(s)	1094, 1284, 1326
ZraI	GACGTC	1 cut(s)	1342
Zsp2I	ATGCAT	1 cut(s)	900

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.