Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006694

Physical Location & Seq

Genomic Coordinates Reverse (-)

9386729 .. 9411073

Gene Structure 24345 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0057000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGAGGCTTCAGTTGCAGCAAAATCGCTCATAAAAATCGCAGCAGTTTCTGGTTCTCTTCGTCAAGCTTCCTACAACCGCGGCCTCGTTCGCTCTGCGATTGAGATAAGCATGGCCATCGAGGGCGTCCAGATAGAGTACATAGACATCGCACCGTTGCCGCTGCTCAACACCGATCTGGAAGGCGAGGGGAGTTTTCCACCCGCCGTCGAAGCTTTTCGTCAGAAGATTTGGGAAGCCGATAGCATCCTCTTTGCTTCTCCCGAGTACAATTACTCCATCGCCGCACCTCTAAAGAATGCGATTGACTGGGCATCCAGACCTCCAAATGTATGGGCTGATAAGGCTGCTGCAATTGTAAGTGCCGGAGGAGACTTTGGTGGTGGACGATCCCAATACCATCTTCGCCAAGTTGGAGTTTTCCTTGACCTTCATTTCATTAACAAACCTGAGTTTTTCTTGAATGCATTCCAGCCTCCAGCAAAATTCGACAGTGATGGCAACTTGATTGATGAACAGTCCAAGGAGAGGTTAAAAAAAGTTCTGCTGTCCCTGCAGGCATTTACTTTGAGACTCAAAGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

195

Amino Acids

21.35

Weight (kDa)

6.15

Isoelectric Point (pI)

46.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_red	PF03358	11 - 156	9e-40	NADPH-dependent FMN reductase
Flavodoxin_2	PF02525	12 - 112	1.6e-07	Flavodoxin-like fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006694)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59720
fragaria_vesca	FvH4_7g03570
malus_domestica	MD13G1081600.v1.1
prunus_persica	Prupe.1G265300_v2.0.a1
pyrus_communis	pycom13g07040
rosa_chinensis	RchiOBHm_Chr1g0325991 RchiOBHm_Chr1g0326081 RchiOBHm_Chr1g0326151
rosa_laevigata	RLG00000030090
rosa_multiflora	Rmu_sc0000028.1_g000011 Rmu_sc0003356.1_g000004 Rmu_sc0011910.1_g000008
rosa_roxburghii	Rroxscaffold_4G00324040
rosa_rugosa	Rorug01G0056800 Rorug01G0056900 Rorug01G0057000 Rorug01G0057100 Rorug01G0057200 Rorug01G0057300
rosa_samantha	Rh1AG073400 Rh1AG074200 Rh1BG059700 Rh1CG073000
rosa_wichuraiana	Rw0G003160 Rw0G020760 Rw1G005950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	81
AciI	CCGC	5 cut(s)	79, 81, 161, 204, 285
AclWI	GGATC	1 cut(s)	384
AcoI	YGGCCR	1 cut(s)	114
AcsI	RAATTY	1 cut(s)	485
AcyI	GRCGYC	1 cut(s)	126
AfaI	GTAC	2 cut(s)	140, 269
AfiI	CCNNNNNNNGG	1 cut(s)	528
AgsI	TTSAA	1 cut(s)	463
AjuI	GAANNNNNNNTTGG	2 cut(s)	387, 419
AluBI	AGCT	2 cut(s)	68, 215
AluI	AGCT	2 cut(s)	68, 215
Alw26I	GTCTC	2 cut(s)	366, 565
AlwI	GGATC	1 cut(s)	384
AlwNI	CAGNNNCTG	1 cut(s)	50
Ama87I	CYCGRG	1 cut(s)	263
AoxI	GGCC	2 cut(s)	82, 114
ApeKI	GCWGC	5 cut(s)	17, 41, 163, 347, 350
ApoI	RAATTY	1 cut(s)	485
Asp700I	GAANNNNTTC	2 cut(s)	216, 467
AvaI	CYCGRG	1 cut(s)	263
BalI	TGGCCA	1 cut(s)	116
BbvI	GCAGC	5 cut(s)	29, 53, 150, 334, 337
BccI	CCATC	4 cut(s)	125, 287, 408, 491
BceAI	ACGGC	1 cut(s)	191
BcgI	CGANNNNNNTGC	4 cut(s)	6, 40, 100, 134
BcoDI	GTCTC	2 cut(s)	366, 565
BfmI	CTRYAG	1 cut(s)	554
BisI	GCNGC	8 cut(s)	18, 42, 82, 161, 164, 285, 348, 351
BlsI	GCNGC	8 cut(s)	19, 43, 83, 162, 165, 286, 349, 352
BmeT110I	CYCGRG	1 cut(s)	263
BmrI	ACTGGG	1 cut(s)	319
BmsI	GCATC	2 cut(s)	255, 323
BmuI	ACTGGG	1 cut(s)	319
BpmI	CTGGAG	1 cut(s)	462
BsaHI	GRCGYC	1 cut(s)	126
BsaJI	CCNNGG	2 cut(s)	79, 522
BsaXI	ACNNNNNCTCC	2 cut(s)	260, 290
Bsc4I	CCNNNNNNNGG	1 cut(s)	528
Bse1I	ACTGG	1 cut(s)	314
BseDI	CCNNGG	2 cut(s)	79, 522
BseGI	GGATG	2 cut(s)	246, 314
BseLI	CCNNNNNNNGG	1 cut(s)	528
BseMII	CTCAG	1 cut(s)	441
BseNI	ACTGG	1 cut(s)	314
BseRI	GAGGAG	1 cut(s)	384
BseXI	GCAGC	5 cut(s)	29, 53, 150, 334, 337
Bsh1236I	CGCG	1 cut(s)	81
BshFI	GGCC	2 cut(s)	84, 116
BsiHKCI	CYCGRG	1 cut(s)	263
BsiSI	CCGG	1 cut(s)	366
BslFI	GGGAC	1 cut(s)	535
BslI	CCNNNNNNNGG	1 cut(s)	528
BsmAI	GTCTC	2 cut(s)	366, 565
BsmFI	GGGAC	1 cut(s)	535
BsmI	GAATGC	3 cut(s)	304, 467, 469
BsnI	GGCC	2 cut(s)	84, 116
BsoBI	CYCGRG	1 cut(s)	263
Bsp143I	GATC	2 cut(s)	175, 389
BspACI	CCGC	5 cut(s)	79, 81, 161, 204, 285
BspANI	GGCC	2 cut(s)	84, 116
BspCNI	CTCAG	1 cut(s)	442
BspFNI	CGCG	1 cut(s)	81
BspMAI	CTGCAG	1 cut(s)	558
BspPI	GGATC	1 cut(s)	384
BsrI	ACTGG	1 cut(s)	314
BssECI	CCNNGG	2 cut(s)	79, 522
BssMI	GATC	2 cut(s)	175, 389
BssNI	GRCGYC	1 cut(s)	126
BssT1I	CCWWGG	1 cut(s)	522
Bst4CI	ACNGT	3 cut(s)	156, 494, 519
Bst6I	CTCTTC	1 cut(s)	63
BstACI	GRCGYC	1 cut(s)	126
BstC8I	GCNNGC	1 cut(s)	558
BstDEI	CTNAG	1 cut(s)	450
BstDSI	CCRYGG	1 cut(s)	79
BstF5I	GGATG	2 cut(s)	246, 314
BstFNI	CGCG	1 cut(s)	81
BstKTI	GATC	2 cut(s)	178, 392
BstMAI	GTCTC	2 cut(s)	366, 565
BstMBI	GATC	2 cut(s)	175, 389
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 90, 212, 344, 553
BstSFI	CTRYAG	1 cut(s)	554
BstUI	CGCG	1 cut(s)	81
BstV1I	GCAGC	5 cut(s)	29, 53, 150, 334, 337
BstXI	CCANNNNNNTGG	1 cut(s)	333
BsuRI	GGCC	2 cut(s)	84, 116
BtgI	CCRYGG	1 cut(s)	79
BtgZI	GCGATG	2 cut(s)	133, 265
BtsCI	GGATG	2 cut(s)	246, 314
BtsIMutI	CAGTG	1 cut(s)	499
Cac8I	GCNNGC	1 cut(s)	558
CaiI	CAGNNNCTG	1 cut(s)	50
Cfr42I	CCGCGG	1 cut(s)	82
CseI	GACGC	1 cut(s)	115
Csp6I	GTAC	2 cut(s)	139, 268
CviAII	CATG	1 cut(s)	112
CviJI	RGCY	9 cut(s)	8, 68, 84, 116, 215, 239, 338, 347, 475
CviKI_1	RGCY	9 cut(s)	8, 68, 84, 116, 215, 239, 338, 347, 475
CviQI	GTAC	2 cut(s)	139, 268
DdeI	CTNAG	1 cut(s)	450
DpnI	GATC	2 cut(s)	177, 391
DpnII	GATC	2 cut(s)	175, 389
EaeI	YGGCCR	1 cut(s)	114
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Eco130I	CCWWGG	1 cut(s)	522
Eco88I	CYCGRG	1 cut(s)	263
EcoT14I	CCWWGG	1 cut(s)	522
EcoT22I	ATGCAT	1 cut(s)	469
ErhI	CCWWGG	1 cut(s)	522
FaeI	CATG	1 cut(s)	115
FaiI	YATR	4 cut(s)	32, 113, 143, 334
FaqI	GGGAC	1 cut(s)	535
FatI	CATG	1 cut(s)	111
FauI	CCCGC	1 cut(s)	211
Fnu4HI	GCNGC	8 cut(s)	18, 42, 82, 161, 164, 285, 348, 351
FokI	GGATG	2 cut(s)	233, 301
Fsp4HI	GCNGC	8 cut(s)	18, 42, 82, 161, 164, 285, 348, 351
GluI	GCNGC	8 cut(s)	18, 42, 82, 161, 164, 285, 348, 351
GsuI	CTGGAG	1 cut(s)	462
HaeIII	GGCC	2 cut(s)	84, 116
HapII	CCGG	1 cut(s)	366
HgaI	GACGC	1 cut(s)	115
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	1 cut(s)	115
HindIII	AAGCTT	2 cut(s)	66, 213
HinfI	GANTC	1 cut(s)	573
HpaII	CCGG	1 cut(s)	366
Hpy166II	GTNNAC	1 cut(s)	386
Hpy188I	TCNGA	1 cut(s)	225
Hpy188III	TCNNGA	5 cut(s)	130, 179, 263, 318, 460
Hpy8I	GTNNAC	1 cut(s)	386
Hpy99I	CGWCG	1 cut(s)	212
HpyAV	CCTTC	2 cut(s)	176, 440
HpyCH4III	ACNGT	3 cut(s)	156, 494, 519
HpyCH4V	TGCA	4 cut(s)	17, 353, 467, 556
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 90, 212, 344, 553
HpyF3I	CTNAG	1 cut(s)	450
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	1 cut(s)	115
KspI	CCGCGG	1 cut(s)	82
Kzo9I	GATC	2 cut(s)	175, 389
Lsp1109I	GCAGC	5 cut(s)	29, 53, 150, 334, 337
LweI	GCATC	2 cut(s)	255, 323
MalI	GATC	2 cut(s)	177, 391
MboI	GATC	2 cut(s)	175, 389
MboII	GAAGA	3 cut(s)	50, 238, 395
MfeI	CAATTG	1 cut(s)	354
MlsI	TGGCCA	1 cut(s)	116
MluCI	AATT	3 cut(s)	271, 354, 485
MluNI	TGGCCA	1 cut(s)	116
MlyI	GAGTC	1 cut(s)	567
MmeI	TCCRAC	1 cut(s)	394
MnlI	CCTC	9 cut(s)	95, 115, 181, 260, 300, 333, 362, 486, 522
Mox20I	TGGCCA	1 cut(s)	116
Mph1103I	ATGCAT	1 cut(s)	469
MroXI	GAANNNNTTC	2 cut(s)	216, 467
MscI	TGGCCA	1 cut(s)	116
MseI	TTAA	2 cut(s)	441, 533
Msp20I	TGGCCA	1 cut(s)	116
MspA1I	CMGCKG	2 cut(s)	81, 163
MspI	CCGG	1 cut(s)	366
MunI	CAATTG	1 cut(s)	354
Mva1269I	GAATGC	3 cut(s)	304, 467, 469
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	5 cut(s)	14, 90, 212, 344, 553
NdeII	GATC	2 cut(s)	175, 389
NlaIII	CATG	1 cut(s)	115
NsiI	ATGCAT	1 cut(s)	469
PctI	GAATGC	3 cut(s)	304, 467, 469
PdmI	GAANNNNTTC	2 cut(s)	216, 467
PkrI	GCNGC	8 cut(s)	19, 43, 83, 162, 165, 286, 349, 352
PleI	GAGTC	1 cut(s)	567
PpsI	GAGTC	1 cut(s)	567
PstI	CTGCAG	1 cut(s)	558
PstNI	CAGNNNCTG	1 cut(s)	50
RsaI	GTAC	2 cut(s)	140, 269
RsaNI	GTAC	2 cut(s)	139, 268
SacII	CCGCGG	1 cut(s)	82
SaqAI	TTAA	2 cut(s)	441, 533
SatI	GCNGC	8 cut(s)	18, 42, 82, 161, 164, 285, 348, 351
Sau3AI	GATC	2 cut(s)	175, 389
SbfI	CCTGCAGG	1 cut(s)	558
SchI	GAGTC	1 cut(s)	567
SdaI	CCTGCAGG	1 cut(s)	558
SetI	ASST	7 cut(s)	70, 217, 292, 325, 432, 451, 533
SfaNI	GCATC	2 cut(s)	255, 323
SfcI	CTRYAG	1 cut(s)	554
Sfr303I	CCGCGG	1 cut(s)	82
SgrBI	CCGCGG	1 cut(s)	82
Sse8387I	CCTGCAGG	1 cut(s)	558
Sse9I	AATT	3 cut(s)	271, 354, 485
SsiI	CCGC	5 cut(s)	79, 81, 161, 204, 285
StyI	CCWWGG	1 cut(s)	522
TaaI	ACNGT	3 cut(s)	156, 494, 519
TaqI	TCGA	3 cut(s)	120, 210, 489
TasI	AATT	3 cut(s)	271, 354, 485
TatI	WGTACW	2 cut(s)	138, 267
TauI	GCSGC	3 cut(s)	84, 163, 287
Tru1I	TTAA	2 cut(s)	441, 533
Tru9I	TTAA	2 cut(s)	441, 533
TscAI	CASTG	1 cut(s)	499
TseI	GCWGC	5 cut(s)	17, 41, 163, 347, 350
TspDTI	ATGAA	3 cut(s)	422, 427, 528
TspRI	CASTG	1 cut(s)	499
XapI	RAATTY	1 cut(s)	485
XmnI	GAANNNNTTC	2 cut(s)	216, 467
Zsp2I	ATGCAT	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.