RchiOBHm_Chr1g0363721

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0013752
Physical Location & Seq
Forward (+)
55058545 .. 55059450
906 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58843

Sequence Viewer

Length: 906 bp
ATGGTGCGGAGATGGAGTGGGCTTTCAGGATTGTGGTATGGTCCAGAGAGGGTGGCTGGTTCTCCGGGTTTGGGTGGCACAGATCGAACTCGATCTGTCTCTCTCATATCTGGGGCGGAGGCAGGGGTGCAGCAGCGACGGACTTCGGCTTTCCAGTGGTGGTTTCTGGCGTCATCGATCCTGCGTGGGTGGTGGCTATGGCGATTCAGATTGGATCGAGGCTGGGGAGATCTCGAATGGGATCTGCCTATGCTTTGGTCTGGGATCGCTTTGTGGCCGGTTGCCTGGTGTAGGGGCTGGCTACGGTGTGAAAAGGCGGTGACGCAACGAAGGGTTTTGGCGCAACAGCGTATTGCTGCGGGGCGGCGGCATGATGGCGACGGGGCTCACTGGCGGCGGGAATGGTTGCAAGCTGCGATTGGTTTGGGCTGTGGGAGGTGGTGTTTGGGCTGGGTCGTTGTTTTTAGGTCTCTCTGGTGGTCTTTGATTTCTGGTTGCTTAGGTTTTCTTTGTTTGGTTTTAGTTGTTGTCTTGGTGAAAATAAGTCCCTCCTCTTGTAAGCGAGGGTTTGGGGGTGGTTGTTTCTGTGTCGTGTCGATGCCATTGTTTTGGTGTCATGGTTGGTCTGCTGTGTCTTGGTCTGGTCTTTTGTCGGTACTTTCTGGTTATCAATGTGATGGTGAATCACCCTTACACGTGTTCTGGTTGTTTTGGGATGCGGTGTCCGAACGGGTGAAAACAGTTCATTGTAATGTTGGTGGCTGGGTGGTATTGGTACAGGTTTGGTTGGTACTCGTTGTAGCTCGTAGGTATGGGCGTAGAATTTGGTTAGGGGTTGGGCCTCTTTGGCTCATGGAGGTCACTTATGGTGACGGTCCCGTAACTATGGATCCAATTGCTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

301

Amino Acids

34.06

Weight (kDa)

9.72

Isoelectric Point (pI)

53.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 9 cut(s) 7, 116, 317, 359, 364, 367, 394, 397, 719
AclWI GGATC 6 cut(s) 172, 222, 249, 272, 884, 897
AcoI YGGCCR 1 cut(s) 275
AcsI RAATTY 1 cut(s) 822
AcvI CACGTG 1 cut(s) 697
AcyI GRCGYC 1 cut(s) 170
AfaI GTAC 3 cut(s) 657, 777, 792
AfiI CCNNNNNNNGG 2 cut(s) 71, 291
AflIII ACRYGT 2 cut(s) 694, 696
AjnI CCWGG 1 cut(s) 284
AluBI AGCT 2 cut(s) 413, 803
AluI AGCT 2 cut(s) 413, 803
Alw26I GTCTC 2 cut(s) 103, 474
AlwI GGATC 6 cut(s) 172, 222, 249, 272, 884, 897
AoxI GGCC 2 cut(s) 275, 839
ApeKI GCWGC 4 cut(s) 130, 133, 356, 413
ApoI RAATTY 1 cut(s) 822
AspLEI GCGC 1 cut(s) 343
AspS9I GGNCC 3 cut(s) 41, 839, 875
AsuC2I CCSGG 1 cut(s) 66
AsuHPI GGTGA 6 cut(s) 331, 547, 678, 692, 745, 881
AvaII GGWCC 2 cut(s) 41, 875
BamHI GGATCC 1 cut(s) 889
BanII GRGCYC 1 cut(s) 388
BbrPI CACGTG 1 cut(s) 697
BbvI GCAGC 4 cut(s) 142, 145, 343, 400
BccI CCATC 3 cut(s) 6, 368, 671
BciT130I CCWGG 1 cut(s) 286
BcnI CCSGG 1 cut(s) 66
BcoDI GTCTC 2 cut(s) 103, 474
BglI GCCNNNNNGGC 1 cut(s) 847
BglII AGATCT 1 cut(s) 229
BisI GCNGC 7 cut(s) 131, 134, 357, 365, 368, 395, 414
BlsI GCNGC 7 cut(s) 132, 135, 358, 366, 369, 396, 415
Bme1390I CCNGG 2 cut(s) 66, 286
Bme18I GGWCC 2 cut(s) 41, 875
BmgT120I GGNCC 3 cut(s) 41, 839, 875
BmiI GGNNCC 2 cut(s) 877, 891
BmrFI CCNGG 2 cut(s) 66, 286
BmsI GCATC 2 cut(s) 588, 706
Bpu10I CCTNAGC 1 cut(s) 499
BpuMI CCSGG 1 cut(s) 66
Bsa29I ATCGAT 1 cut(s) 176
BsaAI YACGTR 1 cut(s) 697
BsaHI GRCGYC 1 cut(s) 170
BsaI GGTCTC 1 cut(s) 474
BsaXI ACNNNNNCTCC 3 cut(s) 31, 427, 457
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 291
Bse118I RCCGGY 1 cut(s) 277
Bse1I ACTGG 2 cut(s) 154, 395
BseBI CCWGG 1 cut(s) 286
BseCI ATCGAT 1 cut(s) 176
BseGI GGATG 1 cut(s) 721
BseLI CCNNNNNNNGG 2 cut(s) 71, 291
BseNI ACTGG 2 cut(s) 154, 395
BseRI GAGGAG 1 cut(s) 541
BseXI GCAGC 4 cut(s) 142, 145, 343, 400
BseYI CCCAGC 3 cut(s) 222, 450, 762
BsgI GTGCAG 1 cut(s) 149
BshFI GGCC 2 cut(s) 277, 841
BshVI ATCGAT 1 cut(s) 176
BsiSI CCGG 2 cut(s) 65, 278
BslFI GGGAC 2 cut(s) 531, 861
BslI CCNNNNNNNGG 2 cut(s) 71, 291
BsmAI GTCTC 2 cut(s) 103, 474
BsmFI GGGAC 2 cut(s) 531, 861
BsnI GGCC 2 cut(s) 277, 841
Bso31I GGTCTC 1 cut(s) 474
Bsp1286I GDGCHC 1 cut(s) 388
Bsp143I GATC 8 cut(s) 82, 92, 177, 214, 229, 241, 264, 889
BspACI CCGC 9 cut(s) 7, 116, 317, 359, 364, 367, 394, 397, 719
BspANI GGCC 2 cut(s) 277, 841
BspDI ATCGAT 1 cut(s) 176
BspLI GGNNCC 2 cut(s) 877, 891
BspPI GGATC 6 cut(s) 172, 222, 249, 272, 884, 897
BspTNI GGTCTC 1 cut(s) 474
BsrFI RCCGGY 1 cut(s) 277
BsrI ACTGG 2 cut(s) 154, 395
BssAI RCCGGY 1 cut(s) 277
BssMI GATC 8 cut(s) 82, 92, 177, 214, 229, 241, 264, 889
BssNI GRCGYC 1 cut(s) 170
Bst2UI CCWGG 1 cut(s) 286
Bst4CI ACNGT 3 cut(s) 306, 742, 875
BstACI GRCGYC 1 cut(s) 170
BstBAI YACGTR 1 cut(s) 697
BstC8I GCNNGC 2 cut(s) 299, 411
BstDEI CTNAG 1 cut(s) 499
BstENI CCTNNNNNAGG 1 cut(s) 289
BstF5I GGATG 1 cut(s) 721
BstHHI GCGC 1 cut(s) 343
BstKTI GATC 8 cut(s) 85, 95, 180, 217, 232, 244, 267, 892
BstMAI GTCTC 2 cut(s) 103, 474
BstMBI GATC 8 cut(s) 82, 92, 177, 214, 229, 241, 264, 889
BstMWI GCNNNNNNNGC 1 cut(s) 847
BstNI CCWGG 1 cut(s) 286
BstSCI CCNGG 2 cut(s) 64, 284
BstV1I GCAGC 4 cut(s) 142, 145, 343, 400
BstX2I RGATCY 3 cut(s) 229, 241, 889
BstXI CCANNNNNNTGG 1 cut(s) 609
BstYI RGATCY 3 cut(s) 229, 241, 889
Bsu15I ATCGAT 1 cut(s) 176
BsuRI GGCC 2 cut(s) 277, 841
BsuTUI ATCGAT 1 cut(s) 176
BtsCI GGATG 1 cut(s) 721
BtsIMutI CAGTG 2 cut(s) 161, 388
Cac8I GCNNGC 2 cut(s) 299, 411
CfoI GCGC 1 cut(s) 343
Cfr10I RCCGGY 1 cut(s) 277
Cfr13I GGNCC 3 cut(s) 41, 839, 875
ClaI ATCGAT 1 cut(s) 176
CseI GACGC 2 cut(s) 159, 331
Csp6I GTAC 3 cut(s) 656, 776, 791
CviAII CATG 3 cut(s) 371, 617, 853
CviQI GTAC 3 cut(s) 656, 776, 791
DdeI CTNAG 1 cut(s) 499
DpnI GATC 8 cut(s) 84, 94, 179, 216, 231, 243, 266, 891
DpnII GATC 8 cut(s) 82, 92, 177, 214, 229, 241, 264, 889
EaeI YGGCCR 1 cut(s) 275
EciI GGCGGA 1 cut(s) 131
Eco24I GRGCYC 1 cut(s) 388
Eco31I GGTCTC 1 cut(s) 474
Eco47I GGWCC 2 cut(s) 41, 875
Eco72I CACGTG 1 cut(s) 697
EcoNI CCTNNNNNAGG 1 cut(s) 289
EcoRII CCWGG 1 cut(s) 284
EcoT38I GRGCYC 1 cut(s) 388
FaeI CATG 3 cut(s) 374, 620, 856
FaqI GGGAC 2 cut(s) 531, 861
FatI CATG 3 cut(s) 370, 616, 852
FauI CCCGC 2 cut(s) 352, 390
Fnu4HI GCNGC 7 cut(s) 131, 134, 357, 365, 368, 395, 414
FokI GGATG 1 cut(s) 728
FriOI GRGCYC 1 cut(s) 388
Fsp4HI GCNGC 7 cut(s) 131, 134, 357, 365, 368, 395, 414
GlaI GCGC 1 cut(s) 342
GluI GCNGC 7 cut(s) 131, 134, 357, 365, 368, 395, 414
GsaI CCCAGC 3 cut(s) 226, 454, 766
HaeIII GGCC 2 cut(s) 277, 841
HapII CCGG 2 cut(s) 65, 278
HgaI GACGC 2 cut(s) 159, 331
HhaI GCGC 1 cut(s) 343
Hin1I GRCGYC 1 cut(s) 170
Hin1II CATG 3 cut(s) 374, 620, 856
Hin6I GCGC 1 cut(s) 341
HinP1I GCGC 1 cut(s) 341
HinfI GANTC 2 cut(s) 204, 683
HpaII CCGG 2 cut(s) 65, 278
HphI GGTGA 6 cut(s) 331, 547, 678, 692, 745, 881
Hpy188I TCNGA 2 cut(s) 209, 727
Hpy188III TCNNGA 3 cut(s) 27, 44, 233
Hpy99I CGWCG 2 cut(s) 141, 383
HpyAV CCTTC 1 cut(s) 324
HpyCH4III ACNGT 3 cut(s) 306, 742, 875
HpyCH4IV ACGT 1 cut(s) 696
HpyCH4V TGCA 2 cut(s) 130, 409
HpyF10VI GCNNNNNNNGC 1 cut(s) 847
HpyF3I CTNAG 1 cut(s) 499
HpySE526I ACGT 1 cut(s) 696
Hsp92I GRCGYC 1 cut(s) 170
Hsp92II CATG 3 cut(s) 374, 620, 856
HspAI GCGC 1 cut(s) 341
Kzo9I GATC 8 cut(s) 82, 92, 177, 214, 229, 241, 264, 889
Lsp1109I GCAGC 4 cut(s) 142, 145, 343, 400
LweI GCATC 2 cut(s) 588, 706
MaeII ACGT 1 cut(s) 696
MaeIII GTNAC 4 cut(s) 319, 859, 869, 880
MalI GATC 8 cut(s) 84, 94, 179, 216, 231, 243, 266, 891
MboI GATC 8 cut(s) 82, 92, 177, 214, 229, 241, 264, 889
MfeI CAATTG 1 cut(s) 894
MflI RGATCY 3 cut(s) 229, 241, 889
MhlI GDGCHC 1 cut(s) 388
MluCI AATT 2 cut(s) 822, 894
MnlI CCTC 9 cut(s) 42, 112, 212, 429, 557, 559, 562, 850, 852
MslI CAYNNNNRTG 1 cut(s) 750
MspI CCGG 2 cut(s) 65, 278
MspR9I CCNGG 2 cut(s) 66, 286
MunI CAATTG 1 cut(s) 894
MvaI CCWGG 1 cut(s) 286
MwoI GCNNNNNNNGC 1 cut(s) 847
NciI CCSGG 1 cut(s) 66
NdeII GATC 8 cut(s) 82, 92, 177, 214, 229, 241, 264, 889
NlaIII CATG 3 cut(s) 374, 620, 856
NlaIV GGNNCC 2 cut(s) 877, 891
NmuCI GTSAC 3 cut(s) 319, 859, 869
PfeI GAWTC 2 cut(s) 204, 683
PkrI GCNGC 7 cut(s) 132, 135, 358, 366, 369, 396, 415
PmaCI CACGTG 1 cut(s) 697
PmlI CACGTG 1 cut(s) 697
Ppu21I YACGTR 1 cut(s) 697
Psp6I CCWGG 1 cut(s) 284
PspCI CACGTG 1 cut(s) 697
PspFI CCCAGC 3 cut(s) 222, 450, 762
PspGI CCWGG 1 cut(s) 284
PspN4I GGNNCC 2 cut(s) 877, 891
PspPI GGNCC 3 cut(s) 41, 839, 875
PsuI RGATCY 3 cut(s) 229, 241, 889
RsaI GTAC 3 cut(s) 657, 777, 792
RsaNI GTAC 3 cut(s) 656, 776, 791
RseI CAYNNNNRTG 1 cut(s) 750
SatI GCNGC 7 cut(s) 131, 134, 357, 365, 368, 395, 414
Sau3AI GATC 8 cut(s) 82, 92, 177, 214, 229, 241, 264, 889
Sau96I GGNCC 3 cut(s) 41, 839, 875
ScrFI CCNGG 2 cut(s) 66, 286
SduI GDGCHC 1 cut(s) 388
SetI ASST 9 cut(s) 415, 440, 470, 505, 699, 783, 805, 812, 861
SfaNI GCATC 2 cut(s) 588, 706
SinI GGWCC 2 cut(s) 41, 875
SmiMI CAYNNNNRTG 1 cut(s) 750
Sse9I AATT 2 cut(s) 822, 894
SsiI CCGC 9 cut(s) 7, 116, 317, 359, 364, 367, 394, 397, 719
StyD4I CCNGG 2 cut(s) 64, 284
TaaI ACNGT 3 cut(s) 306, 742, 875
TaiI ACGT 1 cut(s) 699
TaqI TCGA 6 cut(s) 85, 91, 176, 217, 234, 596
TasI AATT 2 cut(s) 822, 894
TauI GCSGC 3 cut(s) 367, 370, 397
TfiI GAWTC 2 cut(s) 204, 683
TscAI CASTG 2 cut(s) 161, 395
TseFI GTSAC 3 cut(s) 319, 859, 869
TseI GCWGC 4 cut(s) 130, 133, 356, 413
Tsp45I GTSAC 3 cut(s) 319, 859, 869
TspDTI ATGAA 1 cut(s) 734
TspGWI ACGGA 1 cut(s) 154
TspRI CASTG 2 cut(s) 161, 395
VpaK11BI GGWCC 2 cut(s) 41, 875
XagI CCTNNNNNAGG 1 cut(s) 289
XapI RAATTY 1 cut(s) 822
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.