Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033532.1

Orthogroup ID

OG0013752

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1617

Gene Structure 1617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033532.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 428 bp

atgacgaccgccacgggtcctccgccgcctcctccaccgcctccactctccgcagaccccgctgactccgaaaccctagacaatgtgccgatggagaccacctcccattcttcaacccaaataaaacctccgatggggcctccacctcccaaaaaccctagtccacctcctcctcctccccaaaaccgaaaccccactccaccctctacatccaccaccgactccgagacctccaagcaccaatcccaaggctttgccgtcccttattcgattcctgaatggagtggagctccatgccaccagttccagctcgaggtcctcaaggacagcgccattgtcgaccaattcaatgtgtatgaaaaagggccttacatgttcggccgggtcgattgttctggagcaccctactatttctctgtttcatgcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

142

Amino Acids

15.19

Weight (kDa)

4.76

Isoelectric Point (pI)

57.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013752)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0363721 RchiOBHm_Chr2g0173981 RchiOBHm_Chr4g0394391
rosa_multiflora	Rmu_sc0001644.1_g000025 Rmu_sc0003301.1_g000014 Rmu_sc0005592.1_g000022 Rmu_sc0009451.1_g000005 Rmu_sc0033532.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433970 Rroxscaffold_1G00043050 Rroxscaffold_4G00311030 Rroxscaffold_5G00368050 Rroxscaffold_6G00395850 Rroxscaffold_6G00404020 Rroxscaffold_7G00182210
rosa_rugosa	Rorug05G0195200
rosa_samantha	Rh4DG298400
rosa_wichuraiana	Rw4G008430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	339
AciI	CCGC	6 cut(s)	9, 23, 26, 38, 51, 60
AcoI	YGGCCR	1 cut(s)	379
AfiI	CCNNNNNNNGG	2 cut(s)	134, 313
AflIII	ACRYGT	1 cut(s)	372
AgsI	TTSAA	2 cut(s)	114, 349
AluBI	AGCT	2 cut(s)	290, 310
AluI	AGCT	2 cut(s)	290, 310
Alw21I	GWGCWC	2 cut(s)	292, 403
Alw26I	GTCTC	2 cut(s)	89, 221
Ama87I	CYCGRG	1 cut(s)	311
AoxI	GGCC	3 cut(s)	137, 365, 379
AspLEI	GCGC	1 cut(s)	332
AspS9I	GGNCC	4 cut(s)	17, 137, 316, 365
AsuC2I	CCSGG	1 cut(s)	383
AvaI	CYCGRG	1 cut(s)	311
AvaII	GGWCC	2 cut(s)	17, 316
BanII	GRGCYC	1 cut(s)	292
Bbv12I	GWGCWC	2 cut(s)	292, 403
BccI	CCATC	2 cut(s)	85, 127
BceAI	ACGGC	1 cut(s)	242
BcnI	CCSGG	1 cut(s)	383
BcoDI	GTCTC	2 cut(s)	89, 221
BfaI	CTAG	2 cut(s)	77, 159
BfoI	RGCGCY	1 cut(s)	333
BisI	GCNGC	1 cut(s)	26
BlsI	GCNGC	1 cut(s)	27
Bme1390I	CCNGG	1 cut(s)	383
Bme18I	GGWCC	2 cut(s)	17, 316
BmeT110I	CYCGRG	1 cut(s)	311
BmgT120I	GGNCC	4 cut(s)	17, 137, 316, 365
BmiI	GGNNCC	2 cut(s)	18, 138
BmrFI	CCNGG	1 cut(s)	383
BplI	GAGNNNNNCTC	4 cut(s)	86, 118, 274, 306
BpmI	CTGGAG	1 cut(s)	417
BpuEI	CTTGAG	1 cut(s)	305
BpuMI	CCSGG	1 cut(s)	383
BsaI	GGTCTC	2 cut(s)	89, 221
BsaJI	CCNNGG	2 cut(s)	12, 247
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	2 cut(s)	134, 313
Bse1I	ACTGG	1 cut(s)	301
BseDI	CCNNGG	2 cut(s)	12, 247
BseGI	GGATG	1 cut(s)	209
BseLI	CCNNNNNNNGG	2 cut(s)	134, 313
BseNI	ACTGG	1 cut(s)	301
BseRI	GAGGAG	4 cut(s)	21, 159, 162, 165
BseX3I	CGGCCG	1 cut(s)	379
Bsh1285I	CGRYCG	2 cut(s)	9, 382
BshFI	GGCC	3 cut(s)	139, 367, 381
BsiEI	CGRYCG	2 cut(s)	9, 382
BsiHKAI	GWGCWC	2 cut(s)	292, 403
BsiHKCI	CYCGRG	1 cut(s)	311
BsiSI	CCGG	1 cut(s)	382
BslFI	GGGAC	1 cut(s)	245
BslI	CCNNNNNNNGG	2 cut(s)	134, 313
BsmAI	GTCTC	2 cut(s)	89, 221
BsmFI	GGGAC	1 cut(s)	245
BsnI	GGCC	3 cut(s)	139, 367, 381
Bso31I	GGTCTC	2 cut(s)	89, 221
BsoBI	CYCGRG	1 cut(s)	311
Bsp1286I	GDGCHC	2 cut(s)	292, 403
BspACI	CCGC	6 cut(s)	9, 23, 26, 38, 51, 60
BspANI	GGCC	3 cut(s)	139, 367, 381
BspLI	GGNNCC	2 cut(s)	18, 138
BspTNI	GGTCTC	2 cut(s)	89, 221
BsrI	ACTGG	1 cut(s)	301
BssECI	CCNNGG	2 cut(s)	12, 247
BssT1I	CCWWGG	1 cut(s)	247
BstDSI	CCRYGG	1 cut(s)	12
BstF5I	GGATG	1 cut(s)	209
BstH2I	RGCGCY	1 cut(s)	333
BstHHI	GCGC	1 cut(s)	332
BstMAI	GTCTC	2 cut(s)	89, 221
BstMCI	CGRYCG	2 cut(s)	9, 382
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstNSI	RCATGY	1 cut(s)	376
BstSCI	CCNGG	1 cut(s)	381
BstZI	CGGCCG	1 cut(s)	379
BsuRI	GGCC	3 cut(s)	139, 367, 381
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	1 cut(s)	209
CfoI	GCGC	1 cut(s)	332
Cfr13I	GGNCC	4 cut(s)	17, 137, 316, 365
CviAII	CATG	3 cut(s)	294, 373, 423
CviJI	RGCY	6 cut(s)	139, 252, 290, 310, 367, 381
CviKI_1	RGCY	6 cut(s)	139, 252, 290, 310, 367, 381
EaeI	YGGCCR	1 cut(s)	379
EagI	CGGCCG	1 cut(s)	379
EciI	GGCGGA	1 cut(s)	12
Ecl136II	GAGCTC	1 cut(s)	290
EclXI	CGGCCG	1 cut(s)	379
Eco130I	CCWWGG	1 cut(s)	247
Eco24I	GRGCYC	1 cut(s)	292
Eco31I	GGTCTC	2 cut(s)	89, 221
Eco47I	GGWCC	2 cut(s)	17, 316
Eco52I	CGGCCG	1 cut(s)	379
Eco53kI	GAGCTC	1 cut(s)	290
Eco88I	CYCGRG	1 cut(s)	311
EcoICRI	GAGCTC	1 cut(s)	290
EcoO109I	RGGNCCY	4 cut(s)	17, 137, 316, 365
EcoT14I	CCWWGG	1 cut(s)	247
EcoT38I	GRGCYC	1 cut(s)	292
ErhI	CCWWGG	1 cut(s)	247
FaeI	CATG	3 cut(s)	297, 376, 426
FaiI	YATR	4 cut(s)	295, 357, 374, 424
FaqI	GGGAC	1 cut(s)	245
FatI	CATG	3 cut(s)	293, 372, 422
FauI	CCCGC	1 cut(s)	67
FblI	GTMKAC	1 cut(s)	339
Fnu4HI	GCNGC	1 cut(s)	26
FokI	GGATG	1 cut(s)	196
FriOI	GRGCYC	1 cut(s)	292
Fsp4HI	GCNGC	1 cut(s)	26
FspBI	CTAG	2 cut(s)	77, 159
GlaI	GCGC	1 cut(s)	331
GluI	GCNGC	1 cut(s)	26
GsuI	CTGGAG	1 cut(s)	417
HaeII	RGCGCY	1 cut(s)	333
HaeIII	GGCC	3 cut(s)	139, 367, 381
HapII	CCGG	1 cut(s)	382
HhaI	GCGC	1 cut(s)	332
Hin1II	CATG	3 cut(s)	297, 376, 426
Hin6I	GCGC	1 cut(s)	330
HinP1I	GCGC	1 cut(s)	330
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HinfI	GANTC	3 cut(s)	65, 221, 271
HpaII	CCGG	1 cut(s)	382
Hpy166II	GTNNAC	2 cut(s)	164, 340
Hpy188I	TCNGA	3 cut(s)	70, 132, 226
Hpy188III	TCNNGA	2 cut(s)	275, 396
Hpy8I	GTNNAC	2 cut(s)	164, 340
HpyCH4V	TGCA	1 cut(s)	426
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
Hsp92II	CATG	3 cut(s)	297, 376, 426
HspAI	GCGC	1 cut(s)	330
LmnI	GCTCC	3 cut(s)	287, 295, 398
LpnPI	CCDG	5 cut(s)	288, 314, 320, 381, 395
MaeI	CTAG	2 cut(s)	77, 159
MboII	GAAGA	1 cut(s)	102
MhlI	GDGCHC	2 cut(s)	292, 403
MluCI	AATT	1 cut(s)	344
MlyI	GAGTC	2 cut(s)	59, 215
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	1 cut(s)	382
MspR9I	CCNGG	1 cut(s)	383
MwoI	GCNNNNNNNGC	1 cut(s)	59
NciI	CCSGG	1 cut(s)	383
NlaIII	CATG	3 cut(s)	297, 376, 426
NlaIV	GGNNCC	2 cut(s)	18, 138
NspI	RCATGY	1 cut(s)	376
PaeR7I	CTCGAG	1 cut(s)	311
PciI	ACATGT	1 cut(s)	372
PcsI	WCGNNNNNNNCGW	1 cut(s)	384
PfeI	GAWTC	1 cut(s)	271
PkrI	GCNGC	1 cut(s)	27
PleI	GAGTC	2 cut(s)	59, 215
PpsI	GAGTC	2 cut(s)	59, 215
PpuMI	RGGWCCY	2 cut(s)	17, 316
PscI	ACATGT	1 cut(s)	372
Psp124BI	GAGCTC	1 cut(s)	292
Psp5II	RGGWCCY	2 cut(s)	17, 316
PspN4I	GGNNCC	2 cut(s)	18, 138
PspPI	GGNCC	4 cut(s)	17, 137, 316, 365
PspPPI	RGGWCCY	2 cut(s)	17, 316
PspXI	VCTCGAGB	1 cut(s)	311
SacI	GAGCTC	1 cut(s)	292
SalI	GTCGAC	1 cut(s)	338
SatI	GCNGC	1 cut(s)	26
Sau96I	GGNCC	4 cut(s)	17, 137, 316, 365
SchI	GAGTC	2 cut(s)	59, 215
ScrFI	CCNGG	1 cut(s)	383
SduI	GDGCHC	2 cut(s)	292, 403
SetI	ASST	8 cut(s)	104, 130, 148, 169, 233, 292, 312, 318
Sfr274I	CTCGAG	1 cut(s)	311
SinI	GGWCC	2 cut(s)	17, 316
SlaI	CTCGAG	1 cut(s)	311
SmlI	CTYRAG	2 cut(s)	311, 320
SmoI	CTYRAG	2 cut(s)	311, 320
Sse9I	AATT	1 cut(s)	344
SsiI	CCGC	6 cut(s)	9, 23, 26, 38, 51, 60
SspMI	CTAG	2 cut(s)	77, 159
SstI	GAGCTC	1 cut(s)	292
StyD4I	CCNGG	1 cut(s)	381
StyI	CCWWGG	1 cut(s)	247
TaqI	TCGA	4 cut(s)	269, 312, 339, 387
TasI	AATT	1 cut(s)	344
TauI	GCSGC	1 cut(s)	28
TfiI	GAWTC	1 cut(s)	271
TspDTI	ATGAA	2 cut(s)	372, 411
VpaK11BI	GGWCC	2 cut(s)	17, 316
XceI	RCATGY	1 cut(s)	376
XhoI	CTCGAG	1 cut(s)	311
XmiI	GTMKAC	1 cut(s)	339
XspI	CTAG	2 cut(s)	77, 159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.