Rroxscaffold_6G00404020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0013752
Physical Location & Seq
Reverse (-)
26453829 .. 26456345
2517 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00404020.1

Sequence Viewer

Length: 729 bp
ATGGCGAGCTACGGTCCTGGAATGGCGAACAAGTGCTTGTGCTCTGCGAAGGACGAGATCGACCTAGATCTCGCTCGTGCTTCGGTTTCCGAGGGGTTTCGGGGCGGCGGTTTGCGGATGGTGGGTGGTGCTTTGCGGTCATCAATGAAGGAGGTTGGCGAAGACTTTGGGATCGGCGGTGCTCGATCCGATCGGAATACACCGATCCGTTGGGATGCTAGGATCCTGATCCCGAGATCATGGTGGCTTGGCGGCCGGGTGATCCTTACCGGTATTTGGAGAATGATGGCGAGGGAGGGAGATGGCCCGAGTGCGCTCGGTGCACCGCCGGGGACGAAGGAGAGGCCGCCGGTGGTGGGACGGTGCCCGATTTGCAGCGAGGTAAAAGGAAAAAACCCGAGGAGTGTGCTCCTCTCCCGCCGAACACGGCAGGCGATCCCGCCGCCGCGTTCCGGTCCGGAGAGGATTGATGGTTCGAGAGGTGGAGTCGGCTCTCGGGGCGTGTGGTCCGGGAGAGGGGGAAGATTCTCCGATTTCGGGCAGCACGGATCGTACTCGATCTGTCCTTCTTGGATCCAGGGCGGAGGCGGTGATGCAACAGCGACGTTCTTTGGTTGTCCTGTTGGCTTCAGGCGCATCGACCTTACATGGGTTCGGGATGAGGCGATTCGGATCGGATCGGTCCCCGATTCGGTCCGGGTTAGTCCGGTGGTTGGTTGTCTAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

242

Amino Acids

25.77

Weight (kDa)

10.21

Isoelectric Point (pI)

50.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 363
AccII CGCG 1 cut(s) 448
AccIII TCCGGA 1 cut(s) 457
AcoI YGGCCR 1 cut(s) 253
AcuI CTGAAG 1 cut(s) 613
AfaI GTAC 1 cut(s) 554
AfiI CCNNNNNNNGG 8 cut(s) 276, 356, 452, 516, 537, 649, 691, 713
AgeI ACCGGT 1 cut(s) 269
AjnI CCWGG 2 cut(s) 16, 576
AloI GAACNNNNNNTCC 2 cut(s) 457, 489
AluBI AGCT 1 cut(s) 9
AluI AGCT 1 cut(s) 9
Alw21I GWGCWC 4 cut(s) 44, 184, 325, 411
Alw44I GTGCAC 1 cut(s) 321
Ama87I CYCGRG 4 cut(s) 232, 307, 397, 495
Aor13HI TCCGGA 1 cut(s) 457
AoxI GGCC 3 cut(s) 253, 304, 344
ApaLI GTGCAC 1 cut(s) 321
ApeKI GCWGC 2 cut(s) 375, 541
AsiGI ACCGGT 1 cut(s) 269
AspLEI GCGC 2 cut(s) 316, 636
AspS9I GGNCC 6 cut(s) 14, 305, 455, 507, 682, 694
AsuC2I CCSGG 4 cut(s) 257, 330, 511, 698
AsuHPI GGTGA 2 cut(s) 271, 602
AvaI CYCGRG 4 cut(s) 232, 307, 397, 495
AvaII GGWCC 5 cut(s) 14, 455, 507, 682, 694
BaeGI GKGCMC 2 cut(s) 325, 368
BamHI GGATCC 2 cut(s) 222, 573
BanI GGYRCC 1 cut(s) 363
BauI CACGAG 1 cut(s) 75
BbsI GAAGAC 1 cut(s) 168
Bbv12I GWGCWC 4 cut(s) 44, 184, 325, 411
BbvI GCAGC 2 cut(s) 387, 553
BccI CCATC 4 cut(s) 112, 280, 296, 464
BceAI ACGGC 1 cut(s) 443
BcgI CGANNNNNNTGC 2 cut(s) 388, 422
BciT130I CCWGG 2 cut(s) 18, 578
BcnI CCSGG 4 cut(s) 257, 330, 511, 698
BfaI CTAG 3 cut(s) 65, 219, 722
BglII AGATCT 1 cut(s) 67
BisI GCNGC 7 cut(s) 106, 253, 347, 376, 443, 446, 542
BlsI GCNGC 7 cut(s) 107, 254, 348, 377, 444, 447, 543
Bme1390I CCNGG 6 cut(s) 18, 257, 330, 511, 578, 698
Bme18I GGWCC 5 cut(s) 14, 455, 507, 682, 694
BmeT110I CYCGRG 4 cut(s) 232, 307, 397, 495
BmgT120I GGNCC 6 cut(s) 14, 305, 455, 507, 682, 694
BmiI GGNNCC 4 cut(s) 224, 365, 575, 684
BmrFI CCNGG 6 cut(s) 18, 257, 330, 511, 578, 698
BmsI GCATC 3 cut(s) 205, 583, 645
BpiI GAAGAC 1 cut(s) 168
BpuMI CCSGG 4 cut(s) 257, 330, 511, 698
BsaBI GATNNNNATC 2 cut(s) 227, 671
BsaJI CCNNGG 4 cut(s) 90, 329, 398, 577
BsaWI WCCGGW 4 cut(s) 269, 452, 457, 706
Bsc4I CCNNNNNNNGG 8 cut(s) 276, 356, 452, 516, 537, 649, 691, 713
Bse118I RCCGGY 2 cut(s) 269, 349
Bse8I GATNNNNATC 2 cut(s) 227, 671
BseAI TCCGGA 1 cut(s) 457
BseBI CCWGG 2 cut(s) 18, 578
BseDI CCNNGG 4 cut(s) 90, 329, 398, 577
BseGI GGATG 3 cut(s) 123, 220, 664
BseJI GATNNNNATC 2 cut(s) 227, 671
BseLI CCNNNNNNNGG 8 cut(s) 276, 356, 452, 516, 537, 649, 691, 713
BseRI GAGGAG 2 cut(s) 401, 415
BseSI GKGCMC 2 cut(s) 325, 368
BseX3I CGGCCG 1 cut(s) 253
BseXI GCAGC 2 cut(s) 387, 553
Bsh1236I CGCG 1 cut(s) 448
Bsh1285I CGRYCG 2 cut(s) 193, 256
BshFI GGCC 3 cut(s) 255, 306, 346
BshNI GGYRCC 1 cut(s) 363
BshTI ACCGGT 1 cut(s) 269
BsiEI CGRYCG 2 cut(s) 193, 256
BsiHKAI GWGCWC 4 cut(s) 44, 184, 325, 411
BsiHKCI CYCGRG 4 cut(s) 232, 307, 397, 495
BsiSI CCGG 9 cut(s) 256, 270, 329, 350, 453, 458, 510, 697, 707
BslFI GGGAC 3 cut(s) 346, 372, 668
BslI CCNNNNNNNGG 8 cut(s) 276, 356, 452, 516, 537, 649, 691, 713
BsmFI GGGAC 3 cut(s) 346, 372, 668
BsnI GGCC 3 cut(s) 255, 306, 346
BsoBI CYCGRG 4 cut(s) 232, 307, 397, 495
Bsp1286I GDGCHC 5 cut(s) 44, 184, 325, 368, 411
Bsp13I TCCGGA 1 cut(s) 457
BspANI GGCC 3 cut(s) 255, 306, 346
BspEI TCCGGA 1 cut(s) 457
BspFNI CGCG 1 cut(s) 448
BspLI GGNNCC 4 cut(s) 224, 365, 575, 684
BspT107I GGYRCC 1 cut(s) 363
BsrFI RCCGGY 2 cut(s) 269, 349
BssAI RCCGGY 2 cut(s) 269, 349
BssECI CCNNGG 4 cut(s) 90, 329, 398, 577
BssSI CACGAG 1 cut(s) 75
Bst2BI CACGAG 1 cut(s) 75
Bst2UI CCWGG 2 cut(s) 18, 578
Bst4CI ACNGT 2 cut(s) 14, 363
BstC8I GCNNGC 2 cut(s) 7, 432
BstF5I GGATG 3 cut(s) 123, 220, 664
BstFNI CGCG 1 cut(s) 448
BstHHI GCGC 2 cut(s) 316, 636
BstMCI CGRYCG 2 cut(s) 193, 256
BstMWI GCNNNNNNNGC 4 cut(s) 320, 372, 498, 633
BstNI CCWGG 2 cut(s) 18, 578
BstSCI CCNGG 6 cut(s) 16, 255, 328, 509, 576, 696
BstSLI GKGCMC 2 cut(s) 325, 368
BstUI CGCG 1 cut(s) 448
BstV1I GCAGC 2 cut(s) 387, 553
BstV2I GAAGAC 1 cut(s) 168
BstX2I RGATCY 3 cut(s) 67, 222, 573
BstYI RGATCY 3 cut(s) 67, 222, 573
BstZI CGGCCG 1 cut(s) 253
BsuRI GGCC 3 cut(s) 255, 306, 346
BtsCI GGATG 3 cut(s) 123, 220, 664
Cac8I GCNNGC 2 cut(s) 7, 432
CfoI GCGC 2 cut(s) 316, 636
Cfr10I RCCGGY 2 cut(s) 269, 349
Cfr13I GGNCC 6 cut(s) 14, 305, 455, 507, 682, 694
CpoI CGGWCCG 2 cut(s) 455, 694
Csp6I GTAC 1 cut(s) 553
CspAI ACCGGT 1 cut(s) 269
CspI CGGWCCG 2 cut(s) 455, 694
CviAII CATG 2 cut(s) 240, 648
CviJI RGCY 7 cut(s) 9, 247, 255, 306, 346, 492, 627
CviKI_1 RGCY 7 cut(s) 9, 247, 255, 306, 346, 492, 627
CviQI GTAC 1 cut(s) 553
EaeI YGGCCR 1 cut(s) 253
EagI CGGCCG 1 cut(s) 253
EciI GGCGGA 1 cut(s) 597
EclXI CGGCCG 1 cut(s) 253
Eco47I GGWCC 5 cut(s) 14, 455, 507, 682, 694
Eco52I CGGCCG 1 cut(s) 253
Eco57I CTGAAG 1 cut(s) 613
Eco88I CYCGRG 4 cut(s) 232, 307, 397, 495
EcoRII CCWGG 2 cut(s) 16, 576
FaeI CATG 2 cut(s) 243, 651
FaiI YATR 2 cut(s) 241, 649
FaqI GGGAC 3 cut(s) 346, 372, 668
FatI CATG 2 cut(s) 239, 647
FauI CCCGC 2 cut(s) 425, 447
Fnu4HI GCNGC 7 cut(s) 106, 253, 347, 376, 443, 446, 542
FokI GGATG 3 cut(s) 130, 227, 671
Fsp4HI GCNGC 7 cut(s) 106, 253, 347, 376, 443, 446, 542
FspBI CTAG 3 cut(s) 65, 219, 722
GlaI GCGC 2 cut(s) 315, 635
GluI GCNGC 7 cut(s) 106, 253, 347, 376, 443, 446, 542
HaeIII GGCC 3 cut(s) 255, 306, 346
HapII CCGG 9 cut(s) 256, 270, 329, 350, 453, 458, 510, 697, 707
HhaI GCGC 2 cut(s) 316, 636
Hin1II CATG 2 cut(s) 243, 651
Hin6I GCGC 2 cut(s) 314, 634
HinP1I GCGC 2 cut(s) 314, 634
HinfI GANTC 4 cut(s) 486, 525, 667, 689
HpaII CCGG 9 cut(s) 256, 270, 329, 350, 453, 458, 510, 697, 707
HphI GGTGA 2 cut(s) 271, 602
Hpy166II GTNNAC 1 cut(s) 323
Hpy188I TCNGA 6 cut(s) 91, 190, 195, 532, 672, 677
Hpy188III TCNNGA 5 cut(s) 226, 232, 458, 477, 656
Hpy8I GTNNAC 1 cut(s) 323
Hpy99I CGWCG 1 cut(s) 607
HpyAV CCTTC 4 cut(s) 43, 142, 331, 576
HpyCH4III ACNGT 2 cut(s) 14, 363
HpyCH4IV ACGT 1 cut(s) 605
HpyCH4V TGCA 3 cut(s) 323, 375, 596
HpyF10VI GCNNNNNNNGC 4 cut(s) 320, 372, 498, 633
HpySE526I ACGT 1 cut(s) 605
Hsp92II CATG 2 cut(s) 243, 651
HspAI GCGC 2 cut(s) 314, 634
Kpn2I TCCGGA 1 cut(s) 457
LmnI GCTCC 1 cut(s) 414
Lsp1109I GCAGC 2 cut(s) 387, 553
LweI GCATC 3 cut(s) 205, 583, 645
MaeI CTAG 3 cut(s) 65, 219, 722
MaeII ACGT 1 cut(s) 605
MboII GAAGA 2 cut(s) 173, 534
MflI RGATCY 3 cut(s) 67, 222, 573
MhlI GDGCHC 5 cut(s) 44, 184, 325, 368, 411
MlyI GAGTC 1 cut(s) 495
MroI TCCGGA 1 cut(s) 457
MspI CCGG 9 cut(s) 256, 270, 329, 350, 453, 458, 510, 697, 707
MspR9I CCNGG 6 cut(s) 18, 257, 330, 511, 578, 698
MvaI CCWGG 2 cut(s) 18, 578
MvnI CGCG 1 cut(s) 448
MwoI GCNNNNNNNGC 4 cut(s) 320, 372, 498, 633
NciI CCSGG 4 cut(s) 257, 330, 511, 698
NlaIII CATG 2 cut(s) 243, 651
NlaIV GGNNCC 4 cut(s) 224, 365, 575, 684
PfeI GAWTC 3 cut(s) 525, 667, 689
PfoI TCCNGGA 2 cut(s) 16, 509
PinAI ACCGGT 1 cut(s) 269
PkrI GCNGC 7 cut(s) 107, 254, 348, 377, 444, 447, 543
Ple19I CGATCG 1 cut(s) 193
PleI GAGTC 1 cut(s) 494
PpsI GAGTC 1 cut(s) 494
Psp6I CCWGG 2 cut(s) 16, 576
PspGI CCWGG 2 cut(s) 16, 576
PspN4I GGNNCC 4 cut(s) 224, 365, 575, 684
PspPI GGNCC 6 cut(s) 14, 305, 455, 507, 682, 694
PsuI RGATCY 3 cut(s) 67, 222, 573
PvuI CGATCG 1 cut(s) 193
RsaI GTAC 1 cut(s) 554
RsaNI GTAC 1 cut(s) 553
Rsr2I CGGWCCG 2 cut(s) 455, 694
RsrII CGGWCCG 2 cut(s) 455, 694
SatI GCNGC 7 cut(s) 106, 253, 347, 376, 443, 446, 542
Sau96I GGNCC 6 cut(s) 14, 305, 455, 507, 682, 694
SchI GAGTC 1 cut(s) 495
ScrFI CCNGG 6 cut(s) 18, 257, 330, 511, 578, 698
SduI GDGCHC 5 cut(s) 44, 184, 325, 368, 411
SetI ASST 7 cut(s) 11, 66, 156, 384, 484, 608, 645
SfaNI GCATC 3 cut(s) 205, 583, 645
SgrAI CRCCGGYG 1 cut(s) 349
SinI GGWCC 5 cut(s) 14, 455, 507, 682, 694
SspMI CTAG 3 cut(s) 65, 219, 722
StyD4I CCNGG 6 cut(s) 16, 255, 328, 509, 576, 696
TaaI ACNGT 2 cut(s) 14, 363
TaiI ACGT 1 cut(s) 608
TaqI TCGA 5 cut(s) 60, 184, 476, 557, 639
TaqII GACCGA 2 cut(s) 670, 682
TauI GCSGC 5 cut(s) 108, 255, 349, 445, 448
TfiI GAWTC 3 cut(s) 525, 667, 689
TseI GCWGC 2 cut(s) 375, 541
TspDTI ATGAA 1 cut(s) 161
TspGWI ACGGA 2 cut(s) 197, 561
VneI GTGCAC 1 cut(s) 321
VpaK11BI GGWCC 5 cut(s) 14, 455, 507, 682, 694
XspI CTAG 3 cut(s) 65, 219, 722
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.