Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0013752

Physical Location & Seq

Genomic Coordinates Reverse (-)

61352542 .. 61353486

Gene Structure 945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00043050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGTTCGAAGGTGTTGGGGGCTGTTGGGGCGCGGTGTGGTCCTCGGGAGAGTGGTTGCTTCTCCGTTTTCCGCGGTACGGATCGATCTCGATCCGTCATTCTCGGATCCGGGCGAGGCCGTGGTGCCGCGGCGTCATTCTTCGTCTTCCGGTGGCGGTCTCGGCGTCATCGATCCGGTCGTGGTTGTGGCGATTCGGGCCGGATCGGGCGTGGTGATCTCGAAAGGATTCGGCTCCGATCCGGTCCGGATTCGTTCGAGGTGGGTTGCCCGGAGTCGGGGCCGGTTCGGGAGTGACATGGCTATGCCGCAATGGAAGGCTTCCGCGCGGCGGCTTGTTGCGCAGGCGGCGTTTGGTGGTGATGGGCTTGCCGGCGGCGTGTGTGGTTGTCTGCGGTGTTTGGCCTTTGCGGGGGACGGGGGTCTGGGCCGGCCACCGTTCTCGGTCCTCTTTGGTGTTTGTTATTGTTTTTCAATTTGGTTTGCCGTTATTTGTTTTCTCGTTGTTCTTTGGTTCGAATATGTCCCCCTCCGTCGAGCGGGGTTTGGGTGTTTTCGTGTTGCGTCAATGCCATTGTTTTGGTATCTTGGTTGTACTGTAGTGCCATCTCTATGGCTCTGTTTTTTGGCCGTGCTTGCTGTTTATCAATGTGATGATGGATTACCCTTGCACGTGGTCCGGCGGTTTTGGGACACGGTGCTTGAAAGGGTGTTACGATTCATCTTCATATTGGTGGCGTGGTTGTATCTTTACACTAGAGTTCGGCCGCTACCCCTCGTAGCCCGCATGTATGGGCGAATTTGGTGGTTGGAGGTTGGGCTTGTTTGGCTCACCGAGGTCGGTCTTGTTGGCAGATCCGCCACTATGGTTCTAGTTTGGAAGGGGTGTTGTGGTTTGATACCACATATGGTTACTCCTGGTCTTTGTAATATGTTTAATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

314

Amino Acids

34.61

Weight (kDa)

9.75

Isoelectric Point (pI)

50.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013752)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0363721 RchiOBHm_Chr2g0173981 RchiOBHm_Chr4g0394391
rosa_multiflora	Rmu_sc0001644.1_g000025 Rmu_sc0003301.1_g000014 Rmu_sc0005592.1_g000022 Rmu_sc0009451.1_g000005 Rmu_sc0033532.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433970 Rroxscaffold_1G00043050 Rroxscaffold_4G00311030 Rroxscaffold_5G00368050 Rroxscaffold_6G00395850 Rroxscaffold_6G00404020 Rroxscaffold_7G00182210
rosa_rugosa	Rorug05G0195200
rosa_samantha	Rh4DG298400
rosa_wichuraiana	Rw4G008430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	342
AccB1I	GGYRCC	1 cut(s)	124
AccBSI	CCGCTC	1 cut(s)	539
AccII	CGCG	5 cut(s)	33, 74, 130, 326, 328
AccIII	TCCGGA	1 cut(s)	246
AclWI	GGATC	8 cut(s)	86, 89, 101, 114, 167, 211, 233, 849
AcoI	YGGCCR	3 cut(s)	431, 627, 764
AcsI	RAATTY	1 cut(s)	798
AcvI	CACGTG	1 cut(s)	673
AcyI	GRCGYC	2 cut(s)	133, 165
AfaI	GTAC	2 cut(s)	78, 595
AfiI	CCNNNNNNNGG	6 cut(s)	78, 276, 277, 330, 411, 538
AgsI	TTSAA	2 cut(s)	474, 704
AjnI	CCWGG	1 cut(s)	916
Alw26I	GTCTC	1 cut(s)	164
AlwI	GGATC	8 cut(s)	86, 89, 101, 114, 167, 211, 233, 849
Ama87I	CYCGRG	1 cut(s)	44
Aor13HI	TCCGGA	1 cut(s)	246
AoxI	GGCC	8 cut(s)	117, 198, 280, 402, 427, 431, 627, 764
ApoI	RAATTY	1 cut(s)	798
Asp700I	GAANNNNTTC	1 cut(s)	227
AspLEI	GCGC	3 cut(s)	33, 328, 343
AspS9I	GGNCC	7 cut(s)	40, 198, 244, 280, 427, 445, 676
AsuC2I	CCSGG	2 cut(s)	111, 271
AsuHPI	GGTGA	3 cut(s)	226, 371, 823
AsuII	TTCGAA	2 cut(s)	7, 516
AvaI	CYCGRG	1 cut(s)	44
AvaII	GGWCC	4 cut(s)	40, 244, 445, 676
BamHI	GGATCC	1 cut(s)	106
BanI	GGYRCC	1 cut(s)	124
BbrPI	CACGTG	1 cut(s)	673
BbsI	GAAGAC	1 cut(s)	138
BccI	CCATC	3 cut(s)	356, 613, 650
BceAI	ACGGC	3 cut(s)	104, 470, 614
BciT130I	CCWGG	1 cut(s)	918
BcnI	CCSGG	2 cut(s)	111, 271
BcoDI	GTCTC	1 cut(s)	164
BfaI	CTAG	2 cut(s)	756, 872
BfmI	CTRYAG	1 cut(s)	597
BisI	GCNGC	8 cut(s)	128, 131, 308, 329, 332, 348, 376, 767
BlsI	GCNGC	8 cut(s)	129, 132, 309, 330, 333, 349, 377, 768
Bme1390I	CCNGG	3 cut(s)	111, 271, 918
Bme18I	GGWCC	4 cut(s)	40, 244, 445, 676
BmeT110I	CYCGRG	1 cut(s)	44
BmgT120I	GGNCC	7 cut(s)	40, 198, 244, 280, 427, 445, 676
BmiI	GGNNCC	4 cut(s)	108, 126, 235, 281
BmrFI	CCNGG	3 cut(s)	111, 271, 918
BoxI	GACNNNNGTC	1 cut(s)	420
BpiI	GAAGAC	1 cut(s)	138
Bpu14I	TTCGAA	2 cut(s)	7, 516
BpuMI	CCSGG	2 cut(s)	111, 271
Bsa29I	ATCGAT	2 cut(s)	84, 171
BsaAI	YACGTR	1 cut(s)	673
BsaBI	GATNNNNATC	1 cut(s)	90
BsaHI	GRCGYC	2 cut(s)	133, 165
BsaI	GGTCTC	1 cut(s)	164
BsaJI	CCNNGG	5 cut(s)	43, 72, 120, 128, 834
BsaWI	WCCGGW	4 cut(s)	149, 175, 241, 246
Bsc4I	CCNNNNNNNGG	6 cut(s)	78, 276, 277, 330, 411, 538
Bse118I	RCCGGY	3 cut(s)	282, 371, 429
Bse3DI	GCAATG	1 cut(s)	317
Bse8I	GATNNNNATC	1 cut(s)	90
BseAI	TCCGGA	1 cut(s)	246
BseBI	CCWGG	1 cut(s)	918
BseCI	ATCGAT	2 cut(s)	84, 171
BseDI	CCNNGG	5 cut(s)	43, 72, 120, 128, 834
BseJI	GATNNNNATC	1 cut(s)	90
BseLI	CCNNNNNNNGG	6 cut(s)	78, 276, 277, 330, 411, 538
BseMI	GCAATG	1 cut(s)	317
BseX3I	CGGCCG	1 cut(s)	764
Bsh1236I	CGCG	5 cut(s)	33, 74, 130, 326, 328
Bsh1285I	CGRYCG	2 cut(s)	180, 767
BshFI	GGCC	8 cut(s)	119, 200, 282, 404, 429, 433, 629, 766
BshNI	GGYRCC	1 cut(s)	124
BshVI	ATCGAT	2 cut(s)	84, 171
BsiEI	CGRYCG	2 cut(s)	180, 767
BsiHKCI	CYCGRG	1 cut(s)	44
BslFI	GGGAC	3 cut(s)	428, 509, 704
BslI	CCNNNNNNNGG	6 cut(s)	78, 276, 277, 330, 411, 538
BsmAI	GTCTC	1 cut(s)	164
BsmFI	GGGAC	3 cut(s)	428, 509, 704
BsnI	GGCC	8 cut(s)	119, 200, 282, 404, 429, 433, 629, 766
Bso31I	GGTCTC	1 cut(s)	164
BsoBI	CYCGRG	1 cut(s)	44
Bsp119I	TTCGAA	2 cut(s)	7, 516
Bsp13I	TCCGGA	1 cut(s)	246
Bsp143I	GATC	9 cut(s)	81, 85, 91, 106, 172, 203, 216, 238, 854
BspANI	GGCC	8 cut(s)	119, 200, 282, 404, 429, 433, 629, 766
BspDI	ATCGAT	2 cut(s)	84, 171
BspEI	TCCGGA	1 cut(s)	246
BspFNI	CGCG	5 cut(s)	33, 74, 130, 326, 328
BspLI	GGNNCC	4 cut(s)	108, 126, 235, 281
BspPI	GGATC	8 cut(s)	86, 89, 101, 114, 167, 211, 233, 849
BspT104I	TTCGAA	2 cut(s)	7, 516
BspT107I	GGYRCC	1 cut(s)	124
BspTNI	GGTCTC	1 cut(s)	164
BsrBI	CCGCTC	1 cut(s)	539
BsrDI	GCAATG	1 cut(s)	317
BsrFI	RCCGGY	3 cut(s)	282, 371, 429
BssAI	RCCGGY	3 cut(s)	282, 371, 429
BssECI	CCNNGG	5 cut(s)	43, 72, 120, 128, 834
BssMI	GATC	9 cut(s)	81, 85, 91, 106, 172, 203, 216, 238, 854
BssNI	GRCGYC	2 cut(s)	133, 165
Bst2UI	CCWGG	1 cut(s)	918
Bst4CI	ACNGT	3 cut(s)	438, 598, 697
BstACI	GRCGYC	2 cut(s)	133, 165
BstBAI	YACGTR	1 cut(s)	673
BstBI	TTCGAA	2 cut(s)	7, 516
BstC8I	GCNNGC	6 cut(s)	345, 369, 373, 431, 636, 784
BstDSI	CCRYGG	3 cut(s)	72, 120, 128
BstFNI	CGCG	5 cut(s)	33, 74, 130, 326, 328
BstHHI	GCGC	3 cut(s)	33, 328, 343
BstKTI	GATC	9 cut(s)	84, 88, 94, 109, 175, 206, 219, 241, 857
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	9 cut(s)	81, 85, 91, 106, 172, 203, 216, 238, 854
BstMCI	CGRYCG	2 cut(s)	180, 767
BstMWI	GCNNNNNNNGC	7 cut(s)	28, 162, 197, 340, 347, 635, 826
BstNI	CCWGG	1 cut(s)	918
BstNSI	RCATGY	1 cut(s)	790
BstPAI	GACNNNNGTC	1 cut(s)	420
BstSCI	CCNGG	3 cut(s)	109, 269, 916
BstSFI	CTRYAG	1 cut(s)	597
BstUI	CGCG	5 cut(s)	33, 74, 130, 326, 328
BstV2I	GAAGAC	1 cut(s)	138
BstX2I	RGATCY	2 cut(s)	106, 854
BstXI	CCANNNNNNTGG	2 cut(s)	579, 612
BstYI	RGATCY	2 cut(s)	106, 854
BstZI	CGGCCG	1 cut(s)	764
Bsu15I	ATCGAT	2 cut(s)	84, 171
BsuRI	GGCC	8 cut(s)	119, 200, 282, 404, 429, 433, 629, 766
BsuTUI	ATCGAT	2 cut(s)	84, 171
BtgI	CCRYGG	3 cut(s)	72, 120, 128
Cac8I	GCNNGC	6 cut(s)	345, 369, 373, 431, 636, 784
CfoI	GCGC	3 cut(s)	33, 328, 343
Cfr10I	RCCGGY	3 cut(s)	282, 371, 429
Cfr13I	GGNCC	7 cut(s)	40, 198, 244, 280, 427, 445, 676
Cfr42I	CCGCGG	2 cut(s)	75, 131
ClaI	ATCGAT	2 cut(s)	84, 171
CpoI	CGGWCCG	1 cut(s)	244
CseI	GACGC	3 cut(s)	122, 154, 552
Csp6I	GTAC	2 cut(s)	77, 594
CspI	CGGWCCG	1 cut(s)	244
CviAII	CATG	2 cut(s)	298, 787
CviQI	GTAC	2 cut(s)	77, 594
DpnI	GATC	9 cut(s)	83, 87, 93, 108, 174, 205, 218, 240, 856
DpnII	GATC	9 cut(s)	81, 85, 91, 106, 172, 203, 216, 238, 854
EaeI	YGGCCR	3 cut(s)	431, 627, 764
EagI	CGGCCG	1 cut(s)	764
EciI	GGCGGA	1 cut(s)	847
EclXI	CGGCCG	1 cut(s)	764
Eco31I	GGTCTC	1 cut(s)	164
Eco47I	GGWCC	4 cut(s)	40, 244, 445, 676
Eco52I	CGGCCG	1 cut(s)	764
Eco72I	CACGTG	1 cut(s)	673
Eco88I	CYCGRG	1 cut(s)	44
EcoRII	CCWGG	1 cut(s)	916
FaeI	CATG	2 cut(s)	301, 790
FaqI	GGGAC	3 cut(s)	428, 509, 704
FatI	CATG	2 cut(s)	297, 786
FauI	CCCGC	3 cut(s)	403, 532, 791
FauNDI	CATATG	1 cut(s)	906
Fnu4HI	GCNGC	8 cut(s)	128, 131, 308, 329, 332, 348, 376, 767
FseI	GGCCGGCC	1 cut(s)	433
Fsp4HI	GCNGC	8 cut(s)	128, 131, 308, 329, 332, 348, 376, 767
FspBI	CTAG	2 cut(s)	756, 872
FspI	TGCGCA	1 cut(s)	342
GlaI	GCGC	3 cut(s)	32, 327, 342
GluI	GCNGC	8 cut(s)	128, 131, 308, 329, 332, 348, 376, 767
HaeIII	GGCC	8 cut(s)	119, 200, 282, 404, 429, 433, 629, 766
HgaI	GACGC	3 cut(s)	122, 154, 552
HhaI	GCGC	3 cut(s)	33, 328, 343
Hin1I	GRCGYC	2 cut(s)	133, 165
Hin1II	CATG	2 cut(s)	301, 790
Hin6I	GCGC	3 cut(s)	31, 326, 341
HinP1I	GCGC	3 cut(s)	31, 326, 341
HinfI	GANTC	5 cut(s)	193, 228, 250, 274, 717
HphI	GGTGA	3 cut(s)	226, 371, 823
Hpy188I	TCNGA	2 cut(s)	106, 238
Hpy188III	TCNNGA	5 cut(s)	46, 89, 220, 247, 289
Hpy99I	CGWCG	1 cut(s)	537
HpyAV	CCTTC	3 cut(s)	3, 310, 874
HpyCH4III	ACNGT	3 cut(s)	438, 598, 697
HpyCH4IV	ACGT	1 cut(s)	672
HpyCH4V	TGCA	1 cut(s)	670
HpyF10VI	GCNNNNNNNGC	7 cut(s)	28, 162, 197, 340, 347, 635, 826
HpySE526I	ACGT	1 cut(s)	672
Hsp92I	GRCGYC	2 cut(s)	133, 165
Hsp92II	CATG	2 cut(s)	301, 790
HspAI	GCGC	3 cut(s)	31, 326, 341
Kpn2I	TCCGGA	1 cut(s)	246
KroI	GCCGGC	2 cut(s)	371, 429
KroNI	GCCGGC	2 cut(s)	373, 431
KspI	CCGCGG	2 cut(s)	75, 131
Kzo9I	GATC	9 cut(s)	81, 85, 91, 106, 172, 203, 216, 238, 854
LmnI	GCTCC	1 cut(s)	239
MaeI	CTAG	2 cut(s)	756, 872
MaeII	ACGT	1 cut(s)	672
MaeIII	GTNAC	3 cut(s)	293, 711, 910
MalI	GATC	9 cut(s)	83, 87, 93, 108, 174, 205, 218, 240, 856
MbiI	CCGCTC	1 cut(s)	539
MboI	GATC	9 cut(s)	81, 85, 91, 106, 172, 203, 216, 238, 854
MboII	GAAGA	3 cut(s)	132, 138, 715
MflI	RGATCY	2 cut(s)	106, 854
MluCI	AATT	3 cut(s)	474, 798, 937
MlyI	GAGTC	1 cut(s)	283
MmeI	TCCRAC	1 cut(s)	789
MnlI	CCTC	8 cut(s)	53, 109, 252, 458, 539, 785, 805, 829
MroI	TCCGGA	1 cut(s)	246
MroNI	GCCGGC	2 cut(s)	371, 429
MroXI	GAANNNNTTC	1 cut(s)	227
MseI	TTAA	2 cut(s)	936, 943
MslI	CAYNNNNRTG	3 cut(s)	302, 610, 731
MspA1I	CMGCKG	2 cut(s)	74, 130
MspR9I	CCNGG	3 cut(s)	111, 271, 918
MvaI	CCWGG	1 cut(s)	918
MvnI	CGCG	5 cut(s)	33, 74, 130, 326, 328
MwoI	GCNNNNNNNGC	7 cut(s)	28, 162, 197, 340, 347, 635, 826
NaeI	GCCGGC	2 cut(s)	373, 431
NciI	CCSGG	2 cut(s)	111, 271
NdeI	CATATG	1 cut(s)	906
NdeII	GATC	9 cut(s)	81, 85, 91, 106, 172, 203, 216, 238, 854
NgoMIV	GCCGGC	2 cut(s)	371, 429
NlaIII	CATG	2 cut(s)	301, 790
NlaIV	GGNNCC	4 cut(s)	108, 126, 235, 281
NmeAIII	GCCGAG	1 cut(s)	141
NmuCI	GTSAC	1 cut(s)	293
NsbI	TGCGCA	1 cut(s)	342
NspI	RCATGY	1 cut(s)	790
NspV	TTCGAA	2 cut(s)	7, 516
PcsI	WCGNNNNNNNCGW	2 cut(s)	168, 177
PdiI	GCCGGC	2 cut(s)	373, 431
PdmI	GAANNNNTTC	1 cut(s)	227
PfeI	GAWTC	4 cut(s)	193, 228, 250, 717
PkrI	GCNGC	8 cut(s)	129, 132, 309, 330, 333, 349, 377, 768
PleI	GAGTC	1 cut(s)	282
PmaCI	CACGTG	1 cut(s)	673
PmlI	CACGTG	1 cut(s)	673
PpsI	GAGTC	1 cut(s)	282
Ppu21I	YACGTR	1 cut(s)	673
PshAI	GACNNNNGTC	1 cut(s)	420
Psp6I	CCWGG	1 cut(s)	916
PspCI	CACGTG	1 cut(s)	673
PspGI	CCWGG	1 cut(s)	916
PspN4I	GGNNCC	4 cut(s)	108, 126, 235, 281
PspPI	GGNCC	7 cut(s)	40, 198, 244, 280, 427, 445, 676
PsuI	RGATCY	2 cut(s)	106, 854
RigI	GGCCGGCC	1 cut(s)	433
RsaI	GTAC	2 cut(s)	78, 595
RsaNI	GTAC	2 cut(s)	77, 594
RseI	CAYNNNNRTG	3 cut(s)	302, 610, 731
Rsr2I	CGGWCCG	1 cut(s)	244
RsrII	CGGWCCG	1 cut(s)	244
SacII	CCGCGG	2 cut(s)	75, 131
SaqAI	TTAA	2 cut(s)	936, 943
SatI	GCNGC	8 cut(s)	128, 131, 308, 329, 332, 348, 376, 767
Sau3AI	GATC	9 cut(s)	81, 85, 91, 106, 172, 203, 216, 238, 854
Sau96I	GGNCC	7 cut(s)	40, 198, 244, 280, 427, 445, 676
SchI	GAGTC	1 cut(s)	283
ScrFI	CCNGG	3 cut(s)	111, 271, 918
SetI	ASST	5 cut(s)	14, 263, 675, 816, 840
SfcI	CTRYAG	1 cut(s)	597
Sfr303I	CCGCGG	2 cut(s)	75, 131
SfuI	TTCGAA	2 cut(s)	7, 516
SgrBI	CCGCGG	2 cut(s)	75, 131
SinI	GGWCC	4 cut(s)	40, 244, 445, 676
SmiMI	CAYNNNNRTG	3 cut(s)	302, 610, 731
Sse9I	AATT	3 cut(s)	474, 798, 937
SspMI	CTAG	2 cut(s)	756, 872
StyD4I	CCNGG	3 cut(s)	109, 269, 916
TaaI	ACNGT	3 cut(s)	438, 598, 697
TaiI	ACGT	1 cut(s)	675
TaqI	TCGA	8 cut(s)	7, 84, 90, 171, 221, 257, 516, 535
TaqII	GACCGA	2 cut(s)	433, 830
TasI	AATT	3 cut(s)	474, 798, 937
TatI	WGTACW	1 cut(s)	593
TauI	GCSGC	8 cut(s)	130, 133, 310, 331, 334, 350, 378, 769
TfiI	GAWTC	4 cut(s)	193, 228, 250, 717
Tru1I	TTAA	2 cut(s)	936, 943
Tru9I	TTAA	2 cut(s)	936, 943
TseFI	GTSAC	1 cut(s)	293
Tsp45I	GTSAC	1 cut(s)	293
TspDTI	ATGAA	2 cut(s)	709, 715
TspGWI	ACGGA	4 cut(s)	54, 84, 94, 521
VpaK11BI	GGWCC	4 cut(s)	40, 244, 445, 676
XapI	RAATTY	1 cut(s)	798
XceI	RCATGY	1 cut(s)	790
XmnI	GAANNNNTTC	1 cut(s)	227
XspI	CTAG	2 cut(s)	756, 872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.