Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0013752

Physical Location & Seq

Genomic Coordinates Reverse (-)

49818796 .. 49827046

Gene Structure 8251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00368050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGCGATGGGGCTCGTCGGCAATGGGTGTGGATGCTTGCAGCACTTGGCCTTTGTGGGGGAGACTGGGTTTTGGACCGGGCCAATGTTCTTGGGCCTAGTTGGCGTATTTTGGTTGTTTTCAAGTTGGTTTGCTGTTGTGTGTTTTCTCGTTGTTTCTCGCCTGAGAATAAGTCCCCCCTCCGTTGAGCGGGGTTTGGGTGTTTTCGATTACGTCGATGCCATTGTTTTGGTATCTTGGTTGTACCGTAGTGCCATCTCTATGGCTCGGTCTGTTGGCCGTGCCGCTATTTATCGATGTGATGATGAATTACCCTCGCACGTGGTCCGGCGGTTTTGGGACACGGTGCTTGAGAGGGTGTTGCGATTCATCATCATATTGGTGGTAGGGTTGTATATTTACACTAGAGTTTGGCAGCTACCCATGGTAGCCCGCATGTATGGGCGAATTAGGTGGTTGGATGTTGGGCTTGTTTGGCTCACAGAGGAAAATGATTTGTGGCTCAATCTTAGGTGTCATGCCACGTCACCTACACACATCACCTATTTGCCAAATCATGTCATTACTTGGGAAGCTGAGTTCTTCTTGTATGGCTCTTTGGGTTTTGGCTTGGACAAAGTTGCTTCAAACTTGACATTGGGAGGTCCAACACCCTTTGGTGCTAAGAAAGCCAAATTAGACCCTTTCACTAGGGATGTGATCAATTTGCATGGCAAAAGTTGGACACTTCAGGAAGCCGAGGATGAACATGATATGGATTATGATGATGAAGATTACAATCTTAAAGATGGGTTTATCAATGTTAATGCTGATAATGATGATGTGGAAGATAGTAAACTAGCAGAACAACTAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ferritin_2

Protein Analysis

285

Amino Acids

32.39

Weight (kDa)

5.05

Isoelectric Point (pI)

35.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013752)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0363721 RchiOBHm_Chr2g0173981 RchiOBHm_Chr4g0394391
rosa_multiflora	Rmu_sc0001644.1_g000025 Rmu_sc0003301.1_g000014 Rmu_sc0005592.1_g000022 Rmu_sc0009451.1_g000005 Rmu_sc0033532.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433970 Rroxscaffold_1G00043050 Rroxscaffold_4G00311030 Rroxscaffold_5G00368050 Rroxscaffold_6G00395850 Rroxscaffold_6G00404020 Rroxscaffold_7G00182210
rosa_rugosa	Rorug05G0195200
rosa_samantha	Rh4DG298400
rosa_wichuraiana	Rw4G008430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	190
AciI	CCGC	4 cut(s)	190, 285, 331, 433
AcoI	YGGCCR	1 cut(s)	277
AcuI	CTGAAG	1 cut(s)	713
AcvI	CACGTG	1 cut(s)	322
AfaI	GTAC	1 cut(s)	245
AfiI	CCNNNNNNNGG	2 cut(s)	57, 189
AgsI	TTSAA	2 cut(s)	123, 627
AhlI	ACTAGT	1 cut(s)	850
AjiI	CACGTC	1 cut(s)	525
AloI	GAACNNNNNNTCC	2 cut(s)	563, 595
AluBI	AGCT	2 cut(s)	418, 575
AluI	AGCT	2 cut(s)	418, 575
Alw26I	GTCTC	1 cut(s)	56
AoxI	GGCC	4 cut(s)	48, 80, 94, 277
ApeKI	GCWGC	2 cut(s)	40, 415
AspS9I	GGNCC	5 cut(s)	75, 80, 94, 325, 644
AsuC2I	CCSGG	1 cut(s)	79
AsuHPI	GGTGA	2 cut(s)	519, 532
AvaII	GGWCC	3 cut(s)	75, 325, 644
BanII	GRGCYC	1 cut(s)	15
BbrPI	CACGTG	1 cut(s)	322
BbvI	GCAGC	2 cut(s)	52, 427
BccI	CCATC	2 cut(s)	263, 782
BceAI	ACGGC	1 cut(s)	264
BclI	TGATCA	1 cut(s)	699
BcnI	CCSGG	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	56
BcuI	ACTAGT	1 cut(s)	850
BfaI	CTAG	5 cut(s)	98, 405, 690, 839, 851
BglI	GCCNNNNNGGC	1 cut(s)	102
BisI	GCNGC	3 cut(s)	41, 285, 416
BlsI	GCNGC	3 cut(s)	42, 286, 417
Bme1390I	CCNGG	1 cut(s)	79
Bme18I	GGWCC	3 cut(s)	75, 325, 644
BmgBI	CACGTC	1 cut(s)	525
BmgT120I	GGNCC	5 cut(s)	75, 80, 94, 325, 644
BmrFI	CCNGG	1 cut(s)	79
BmrI	ACTGGG	1 cut(s)	75
BmsI	GCATC	2 cut(s)	23, 208
BmuI	ACTGGG	1 cut(s)	75
BpuEI	CTTGAG	1 cut(s)	371
BpuMI	CCSGG	1 cut(s)	79
Bsa29I	ATCGAT	1 cut(s)	295
BsaAI	YACGTR	1 cut(s)	322
BsaBI	GATNNNNATC	1 cut(s)	777
BsaJI	CCNNGG	2 cut(s)	423, 738
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
Bsc4I	CCNNNNNNNGG	2 cut(s)	57, 189
Bse1I	ACTGG	1 cut(s)	70
Bse3DI	GCAATG	1 cut(s)	28
Bse8I	GATNNNNATC	1 cut(s)	777
BseCI	ATCGAT	1 cut(s)	295
BseDI	CCNNGG	2 cut(s)	423, 738
BseGI	GGATG	4 cut(s)	38, 466, 700, 748
BseJI	GATNNNNATC	1 cut(s)	777
BseLI	CCNNNNNNNGG	2 cut(s)	57, 189
BseMI	GCAATG	1 cut(s)	28
BseMII	CTCAG	2 cut(s)	155, 567
BseNI	ACTGG	1 cut(s)	70
BseXI	GCAGC	2 cut(s)	52, 427
BshFI	GGCC	4 cut(s)	50, 82, 96, 279
BshVI	ATCGAT	1 cut(s)	295
BsiSI	CCGG	2 cut(s)	78, 328
BslFI	GGGAC	2 cut(s)	159, 353
BslI	CCNNNNNNNGG	2 cut(s)	57, 189
BsmAI	GTCTC	1 cut(s)	56
BsmFI	GGGAC	2 cut(s)	159, 353
BsnI	GGCC	4 cut(s)	50, 82, 96, 279
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp143I	GATC	1 cut(s)	699
Bsp19I	CCATGG	1 cut(s)	423
BspACI	CCGC	4 cut(s)	190, 285, 331, 433
BspANI	GGCC	4 cut(s)	50, 82, 96, 279
BspCNI	CTCAG	2 cut(s)	156, 568
BspDI	ATCGAT	1 cut(s)	295
BsrBI	CCGCTC	1 cut(s)	190
BsrDI	GCAATG	1 cut(s)	28
BsrI	ACTGG	1 cut(s)	70
BssECI	CCNNGG	2 cut(s)	423, 738
BssMI	GATC	1 cut(s)	699
BssT1I	CCWWGG	1 cut(s)	423
Bst4CI	ACNGT	2 cut(s)	248, 346
BstBAI	YACGTR	1 cut(s)	322
BstC8I	GCNNGC	2 cut(s)	38, 433
BstDEI	CTNAG	4 cut(s)	164, 509, 576, 663
BstDSI	CCRYGG	1 cut(s)	423
BstF5I	GGATG	4 cut(s)	38, 466, 700, 748
BstKTI	GATC	1 cut(s)	702
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	1 cut(s)	699
BstMWI	GCNNNNNNNGC	3 cut(s)	102, 475, 668
BstNSI	RCATGY	1 cut(s)	439
BstSCI	CCNGG	1 cut(s)	77
BstV1I	GCAGC	2 cut(s)	52, 427
BstXI	CCANNNNNNTGG	2 cut(s)	229, 262
Bsu15I	ATCGAT	1 cut(s)	295
BsuRI	GGCC	4 cut(s)	50, 82, 96, 279
BsuTUI	ATCGAT	1 cut(s)	295
BtgI	CCRYGG	1 cut(s)	423
BtgZI	GCGATG	1 cut(s)	20
BtrI	CACGTC	1 cut(s)	525
BtsCI	GGATG	4 cut(s)	38, 466, 700, 748
Cac8I	GCNNGC	2 cut(s)	38, 433
Cfr13I	GGNCC	5 cut(s)	75, 80, 94, 325, 644
ClaI	ATCGAT	1 cut(s)	295
Csp6I	GTAC	1 cut(s)	244
CspCI	CAANNNNNGTGG	2 cut(s)	10, 45
CviAII	CATG	6 cut(s)	424, 436, 518, 557, 710, 749
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	4 cut(s)	164, 509, 576, 663
DpnI	GATC	1 cut(s)	701
DpnII	GATC	1 cut(s)	699
EaeI	YGGCCR	1 cut(s)	277
Eco130I	CCWWGG	1 cut(s)	423
Eco24I	GRGCYC	1 cut(s)	15
Eco47I	GGWCC	3 cut(s)	75, 325, 644
Eco57I	CTGAAG	1 cut(s)	713
Eco72I	CACGTG	1 cut(s)	322
EcoT14I	CCWWGG	1 cut(s)	423
EcoT38I	GRGCYC	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	423
FaeI	CATG	6 cut(s)	427, 439, 521, 560, 713, 752
FaqI	GGGAC	2 cut(s)	159, 353
FatI	CATG	6 cut(s)	423, 435, 517, 556, 709, 748
FauI	CCCGC	2 cut(s)	183, 440
FbaI	TGATCA	1 cut(s)	699
Fnu4HI	GCNGC	3 cut(s)	41, 285, 416
FokI	GGATG	4 cut(s)	45, 473, 707, 755
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	3 cut(s)	41, 285, 416
FspBI	CTAG	5 cut(s)	98, 405, 690, 839, 851
GluI	GCNGC	3 cut(s)	41, 285, 416
HaeIII	GGCC	4 cut(s)	50, 82, 96, 279
HapII	CCGG	2 cut(s)	78, 328
Hin1II	CATG	6 cut(s)	427, 439, 521, 560, 713, 752
HinfI	GANTC	1 cut(s)	366
HpaII	CCGG	2 cut(s)	78, 328
HphI	GGTGA	2 cut(s)	519, 532
Hpy166II	GTNNAC	1 cut(s)	836
Hpy188III	TCNNGA	1 cut(s)	731
Hpy8I	GTNNAC	1 cut(s)	836
Hpy99I	CGWCG	2 cut(s)	20, 218
HpyCH4III	ACNGT	2 cut(s)	248, 346
HpyCH4IV	ACGT	3 cut(s)	213, 321, 524
HpyCH4V	TGCA	2 cut(s)	40, 709
HpyF10VI	GCNNNNNNNGC	3 cut(s)	102, 475, 668
HpyF3I	CTNAG	4 cut(s)	164, 509, 576, 663
HpySE526I	ACGT	3 cut(s)	213, 321, 524
Hsp92II	CATG	6 cut(s)	427, 439, 521, 560, 713, 752
Ksp22I	TGATCA	1 cut(s)	699
Kzo9I	GATC	1 cut(s)	699
LpnPI	CCDG	5 cut(s)	51, 91, 176, 341, 716
Lsp1109I	GCAGC	2 cut(s)	52, 427
LweI	GCATC	2 cut(s)	23, 208
MaeI	CTAG	5 cut(s)	98, 405, 690, 839, 851
MaeII	ACGT	3 cut(s)	213, 321, 524
MaeIII	GTNAC	1 cut(s)	525
MalI	GATC	1 cut(s)	701
MbiI	CCGCTC	1 cut(s)	190
MboI	GATC	1 cut(s)	699
MboII	GAAGA	3 cut(s)	574, 782, 839
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	4 cut(s)	308, 447, 674, 703
MmeI	TCCRAC	3 cut(s)	438, 671, 701
MnlI	CCTC	6 cut(s)	190, 325, 348, 478, 635, 733
MseI	TTAA	2 cut(s)	783, 804
MslI	CAYNNNNRTG	2 cut(s)	260, 380
MspI	CCGG	2 cut(s)	78, 328
MspR9I	CCNGG	1 cut(s)	79
MwoI	GCNNNNNNNGC	3 cut(s)	102, 475, 668
NciI	CCSGG	1 cut(s)	79
NcoI	CCATGG	1 cut(s)	423
NdeII	GATC	1 cut(s)	699
NlaIII	CATG	6 cut(s)	427, 439, 521, 560, 713, 752
NmeAIII	GCCGAG	1 cut(s)	763
NmuCI	GTSAC	1 cut(s)	525
NspI	RCATGY	1 cut(s)	439
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	366
PkrI	GCNGC	3 cut(s)	42, 286, 417
PmaCI	CACGTG	1 cut(s)	322
PmlI	CACGTG	1 cut(s)	322
Ppu21I	YACGTR	1 cut(s)	322
PspCI	CACGTG	1 cut(s)	322
PspPI	GGNCC	5 cut(s)	75, 80, 94, 325, 644
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
RseI	CAYNNNNRTG	2 cut(s)	260, 380
SaqAI	TTAA	2 cut(s)	783, 804
SatI	GCNGC	3 cut(s)	41, 285, 416
Sau3AI	GATC	1 cut(s)	699
Sau96I	GGNCC	5 cut(s)	75, 80, 94, 325, 644
ScrFI	CCNGG	1 cut(s)	79
SduI	GDGCHC	1 cut(s)	15
SfaNI	GCATC	2 cut(s)	23, 208
SinI	GGWCC	3 cut(s)	75, 325, 644
SmiMI	CAYNNNNRTG	2 cut(s)	260, 380
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
SpeI	ACTAGT	1 cut(s)	850
Sse9I	AATT	4 cut(s)	308, 447, 674, 703
SsiI	CCGC	4 cut(s)	190, 285, 331, 433
SspMI	CTAG	5 cut(s)	98, 405, 690, 839, 851
StyD4I	CCNGG	1 cut(s)	77
StyI	CCWWGG	1 cut(s)	423
TaaI	ACNGT	2 cut(s)	248, 346
TaiI	ACGT	3 cut(s)	216, 324, 527
TaqI	TCGA	3 cut(s)	207, 216, 295
TaqII	GACCGA	1 cut(s)	258
TasI	AATT	4 cut(s)	308, 447, 674, 703
TauI	GCSGC	1 cut(s)	287
TfiI	GAWTC	1 cut(s)	366
Tru1I	TTAA	2 cut(s)	783, 804
Tru9I	TTAA	2 cut(s)	783, 804
TseFI	GTSAC	1 cut(s)	525
TseI	GCWGC	2 cut(s)	40, 415
Tsp45I	GTSAC	1 cut(s)	525
TspDTI	ATGAA	4 cut(s)	321, 358, 759, 783
TspGWI	ACGGA	1 cut(s)	172
VpaK11BI	GGWCC	3 cut(s)	75, 325, 644
XceI	RCATGY	1 cut(s)	439
XspI	CTAG	5 cut(s)	98, 405, 690, 839, 851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.