Rmu_sc0009451.1_g000005

Inner membrane component of T3SS, cytoplasmic domain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009451.1
Physical Location & Seq
Reverse (-)
16852 .. 21584
4733 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009451.1_g000005.1.cds

Sequence Viewer

Length: 1197 bp
atgacgaccgccacgggtcctccgccgcctccgccaccgcctccactctctgcagaccccgctgactccgaaaccctagacaatgtgccgatggagaccacctcccattcttcaacccaaataaagcctccgatggggcctccacctcccaaaaaccctagtccacctcctcctcctccccaaaacccaaaccccactccaccctctacatccaccaccgactccgagacctccaagcaccaatcccaaggctttgccgtcccttattcgattcctgaatggagtggagctccatgccaccagttccagctcgaggtcctcaaggacagcgccattgtcgaccaattcaatgtgtatgaaaaagggccttacatgttcggccgggtcgattgttctggagcaccctactatttctctgtttcatgcaggcaatcaggcctctgcgttctggcccgggagaggattgatggttcgaaggtgttgggggctgttggggcagcggtgtggtcctgggagagtggttgcttctccgttttcgggcgttcggatcggggcagtggtgatctcgaaagggttctggctccgatctggtctggattcattctgaggtggggtgcctggtgttggggctggttctggagtgacatggctgtgctgcaatggaaggcttcggcgcggcggcttgttgctgcagggcggcgttttggtggtgatggggcttgccggcggcgtgtgtggttgtctgcagtgcttggcctttgcgggggaataagtcccccctctgttaagcgggggtttaggtgttttcaggttgcgtcgatgccattgttttggtatcttggttgtactgtagtgccatctctatggctcggtctgttggtcgtgccggctgtttatcaatgtgatgatgaagtacccttgcacgtggtctggcggttttgggacacggtgcttgaaagggtgttacgattcatctttatattggtggcagggttgtatctttacactagagttcggctactacccatggtagcccgcatgtatgggagaatttggtggttggaggttgggcttgtttggctcactgaggtcggtcttgttggcagatccgccactatggttctagtttggaaggggtgttgtggtttgataccacatatggttactcttggtctttgtaatatgtctgattattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

398

Amino Acids

43.94

Weight (kDa)

8.51

Isoelectric Point (pI)

50.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 614
AccI GTMKAC 1 cut(s) 339
AccII CGCG 1 cut(s) 676
AclWI GGATC 2 cut(s) 555, 1101
AcoI YGGCCR 1 cut(s) 379
AcsI RAATTY 1 cut(s) 1050
AcvI CACGTG 1 cut(s) 925
AfaI GTAC 2 cut(s) 847, 915
AfiI CCNNNNNNNGG 6 cut(s) 134, 313, 459, 537, 624, 763
AflIII ACRYGT 1 cut(s) 372
AgsI TTSAA 3 cut(s) 114, 349, 956
AjnI CCWGG 2 cut(s) 509, 617
AloI GAACNNNNNNTCC 2 cut(s) 454, 486
AluBI AGCT 2 cut(s) 290, 310
AluI AGCT 2 cut(s) 290, 310
Alw21I GWGCWC 2 cut(s) 292, 403
Alw26I GTCTC 2 cut(s) 89, 221
AlwI GGATC 2 cut(s) 555, 1101
Ama87I CYCGRG 2 cut(s) 311, 453
AoxI GGCC 6 cut(s) 137, 365, 379, 436, 450, 754
ApeKI GCWGC 3 cut(s) 497, 655, 689
ApoI RAATTY 1 cut(s) 1050
Asp700I GAANNNNTTC 1 cut(s) 573
AspLEI GCGC 2 cut(s) 332, 676
AspS9I GGNCC 6 cut(s) 17, 137, 316, 365, 451, 507
AsuC2I CCSGG 3 cut(s) 383, 454, 455
AsuHPI GGTGA 2 cut(s) 572, 722
AsuII TTCGAA 1 cut(s) 473
AvaI CYCGRG 2 cut(s) 311, 453
AvaII GGWCC 3 cut(s) 17, 316, 507
BanI GGYRCC 1 cut(s) 614
BanII GRGCYC 1 cut(s) 292
BbrPI CACGTG 1 cut(s) 925
Bbv12I GWGCWC 2 cut(s) 292, 403
BbvI GCAGC 3 cut(s) 509, 642, 676
BccI CCATC 5 cut(s) 85, 127, 461, 707, 865
BceAI ACGGC 1 cut(s) 242
BciT130I CCWGG 2 cut(s) 511, 619
BcnI CCSGG 3 cut(s) 383, 454, 455
BcoDI GTCTC 2 cut(s) 89, 221
BfaI CTAG 4 cut(s) 77, 159, 1008, 1124
BfmI CTRYAG 4 cut(s) 51, 690, 744, 849
BfoI RGCGCY 1 cut(s) 333
BisI GCNGC 8 cut(s) 26, 498, 656, 677, 680, 690, 698, 728
BlsI GCNGC 8 cut(s) 27, 499, 657, 678, 681, 691, 699, 729
Bme1390I CCNGG 5 cut(s) 383, 454, 455, 511, 619
Bme18I GGWCC 3 cut(s) 17, 316, 507
BmeT110I CYCGRG 2 cut(s) 311, 453
BmgT120I GGNCC 6 cut(s) 17, 137, 316, 365, 451, 507
BmiI GGNNCC 4 cut(s) 18, 138, 582, 616
BmrFI CCNGG 5 cut(s) 383, 454, 455, 511, 619
BmsI GCATC 1 cut(s) 810
BplI GAGNNNNNCTC 4 cut(s) 86, 118, 274, 306
BpmI CTGGAG 2 cut(s) 417, 658
Bpu14I TTCGAA 1 cut(s) 473
BpuEI CTTGAG 1 cut(s) 305
BpuMI CCSGG 3 cut(s) 383, 454, 455
BsaAI YACGTR 1 cut(s) 925
BsaI GGTCTC 2 cut(s) 89, 221
BsaJI CCNNGG 5 cut(s) 12, 247, 453, 510, 1026
BsaXI ACNNNNNCTCC 1 cut(s) 34
Bsc4I CCNNNNNNNGG 6 cut(s) 134, 313, 459, 537, 624, 763
Bse118I RCCGGY 2 cut(s) 723, 886
Bse1I ACTGG 1 cut(s) 301
Bse3DI GCAATG 1 cut(s) 665
BseBI CCWGG 2 cut(s) 511, 619
BseDI CCNNGG 5 cut(s) 12, 247, 453, 510, 1026
BseGI GGATG 1 cut(s) 209
BseLI CCNNNNNNNGG 6 cut(s) 134, 313, 459, 537, 624, 763
BseMI GCAATG 1 cut(s) 665
BseMII CTCAG 2 cut(s) 596, 1077
BseNI ACTGG 1 cut(s) 301
BseRI GAGGAG 3 cut(s) 159, 162, 165
BseX3I CGGCCG 1 cut(s) 379
BseXI GCAGC 3 cut(s) 509, 642, 676
Bsh1236I CGCG 1 cut(s) 676
Bsh1285I CGRYCG 2 cut(s) 9, 382
BshFI GGCC 6 cut(s) 139, 367, 381, 438, 452, 756
BshNI GGYRCC 1 cut(s) 614
BsiEI CGRYCG 2 cut(s) 9, 382
BsiHKAI GWGCWC 2 cut(s) 292, 403
BsiHKCI CYCGRG 2 cut(s) 311, 453
BsiSI CCGG 4 cut(s) 382, 454, 724, 887
BslFI GGGAC 3 cut(s) 245, 759, 956
BslI CCNNNNNNNGG 6 cut(s) 134, 313, 459, 537, 624, 763
BsmAI GTCTC 2 cut(s) 89, 221
BsmFI GGGAC 3 cut(s) 245, 759, 956
BsnI GGCC 6 cut(s) 139, 367, 381, 438, 452, 756
Bso31I GGTCTC 2 cut(s) 89, 221
BsoBI CYCGRG 2 cut(s) 311, 453
Bsp119I TTCGAA 1 cut(s) 473
Bsp1286I GDGCHC 2 cut(s) 292, 403
Bsp143I GATC 4 cut(s) 547, 562, 585, 1106
Bsp19I CCATGG 1 cut(s) 1026
BspANI GGCC 6 cut(s) 139, 367, 381, 438, 452, 756
BspCNI CTCAG 2 cut(s) 597, 1078
BspFNI CGCG 1 cut(s) 676
BspLI GGNNCC 4 cut(s) 18, 138, 582, 616
BspMAI CTGCAG 3 cut(s) 55, 694, 748
BspPI GGATC 2 cut(s) 555, 1101
BspT104I TTCGAA 1 cut(s) 473
BspT107I GGYRCC 1 cut(s) 614
BspTNI GGTCTC 2 cut(s) 89, 221
BsrDI GCAATG 1 cut(s) 665
BsrFI RCCGGY 2 cut(s) 723, 886
BsrI ACTGG 1 cut(s) 301
BssAI RCCGGY 2 cut(s) 723, 886
BssECI CCNNGG 5 cut(s) 12, 247, 453, 510, 1026
BssMI GATC 4 cut(s) 547, 562, 585, 1106
BssT1I CCWWGG 2 cut(s) 247, 1026
Bst2UI CCWGG 2 cut(s) 511, 619
Bst4CI ACNGT 2 cut(s) 850, 949
BstBAI YACGTR 1 cut(s) 925
BstBI TTCGAA 1 cut(s) 473
BstC8I GCNNGC 5 cut(s) 428, 721, 725, 888, 1036
BstDEI CTNAG 2 cut(s) 605, 1086
BstDSI CCRYGG 2 cut(s) 12, 1026
BstF5I GGATG 1 cut(s) 209
BstFNI CGCG 1 cut(s) 676
BstH2I RGCGCY 1 cut(s) 333
BstHHI GCGC 2 cut(s) 332, 676
BstKTI GATC 4 cut(s) 550, 565, 588, 1109
BstMAI GTCTC 2 cut(s) 89, 221
BstMBI GATC 4 cut(s) 547, 562, 585, 1106
BstMCI CGRYCG 2 cut(s) 9, 382
BstMWI GCNNNNNNNGC 4 cut(s) 31, 59, 494, 1078
BstNI CCWGG 2 cut(s) 511, 619
BstNSI RCATGY 2 cut(s) 376, 1042
BstSCI CCNGG 5 cut(s) 381, 452, 453, 509, 617
BstSFI CTRYAG 4 cut(s) 51, 690, 744, 849
BstUI CGCG 1 cut(s) 676
BstV1I GCAGC 3 cut(s) 509, 642, 676
BstX2I RGATCY 1 cut(s) 1106
BstXI CCANNNNNNTGG 2 cut(s) 831, 864
BstYI RGATCY 1 cut(s) 1106
BstZI CGGCCG 1 cut(s) 379
BsuRI GGCC 6 cut(s) 139, 367, 381, 438, 452, 756
BtgI CCRYGG 2 cut(s) 12, 1026
BtsCI GGATG 1 cut(s) 209
BtsI GCAGTG 2 cut(s) 562, 753
BtsIMutI CAGTG 3 cut(s) 562, 753, 1083
Cac8I GCNNGC 5 cut(s) 428, 721, 725, 888, 1036
CfoI GCGC 2 cut(s) 332, 676
Cfr10I RCCGGY 2 cut(s) 723, 886
Cfr13I GGNCC 6 cut(s) 17, 137, 316, 365, 451, 507
Cfr9I CCCGGG 1 cut(s) 453
CseI GACGC 1 cut(s) 804
Csp6I GTAC 2 cut(s) 846, 914
CviAII CATG 6 cut(s) 294, 373, 423, 646, 1027, 1039
CviQI GTAC 2 cut(s) 846, 914
DdeI CTNAG 2 cut(s) 605, 1086
DpnI GATC 4 cut(s) 549, 564, 587, 1108
DpnII GATC 4 cut(s) 547, 562, 585, 1106
EaeI YGGCCR 1 cut(s) 379
EagI CGGCCG 1 cut(s) 379
EciI GGCGGA 3 cut(s) 12, 21, 1099
Ecl136II GAGCTC 1 cut(s) 290
EclXI CGGCCG 1 cut(s) 379
Eco130I CCWWGG 2 cut(s) 247, 1026
Eco147I AGGCCT 1 cut(s) 438
Eco24I GRGCYC 1 cut(s) 292
Eco31I GGTCTC 2 cut(s) 89, 221
Eco47I GGWCC 3 cut(s) 17, 316, 507
Eco52I CGGCCG 1 cut(s) 379
Eco53kI GAGCTC 1 cut(s) 290
Eco72I CACGTG 1 cut(s) 925
Eco88I CYCGRG 2 cut(s) 311, 453
EcoICRI GAGCTC 1 cut(s) 290
EcoO109I RGGNCCY 4 cut(s) 17, 137, 316, 365
EcoRII CCWGG 2 cut(s) 509, 617
EcoT14I CCWWGG 2 cut(s) 247, 1026
EcoT38I GRGCYC 1 cut(s) 292
ErhI CCWWGG 2 cut(s) 247, 1026
FaeI CATG 6 cut(s) 297, 376, 426, 649, 1030, 1042
FaqI GGGAC 3 cut(s) 245, 759, 956
FatI CATG 6 cut(s) 293, 372, 422, 645, 1026, 1038
FauI CCCGC 4 cut(s) 67, 755, 783, 1043
FauNDI CATATG 1 cut(s) 1158
FblI GTMKAC 1 cut(s) 339
Fnu4HI GCNGC 8 cut(s) 26, 498, 656, 677, 680, 690, 698, 728
FokI GGATG 1 cut(s) 196
FriOI GRGCYC 1 cut(s) 292
Fsp4HI GCNGC 8 cut(s) 26, 498, 656, 677, 680, 690, 698, 728
FspBI CTAG 4 cut(s) 77, 159, 1008, 1124
GlaI GCGC 2 cut(s) 331, 675
GluI GCNGC 8 cut(s) 26, 498, 656, 677, 680, 690, 698, 728
GsuI CTGGAG 2 cut(s) 417, 658
HaeII RGCGCY 1 cut(s) 333
HaeIII GGCC 6 cut(s) 139, 367, 381, 438, 452, 756
HapII CCGG 4 cut(s) 382, 454, 724, 887
HgaI GACGC 1 cut(s) 804
HhaI GCGC 2 cut(s) 332, 676
Hin1II CATG 6 cut(s) 297, 376, 426, 649, 1030, 1042
Hin6I GCGC 2 cut(s) 330, 674
HinP1I GCGC 2 cut(s) 330, 674
HincII GTYRAC 1 cut(s) 340
HindII GTYRAC 1 cut(s) 340
HinfI GANTC 5 cut(s) 65, 221, 271, 597, 969
HpaII CCGG 4 cut(s) 382, 454, 724, 887
HphI GGTGA 2 cut(s) 572, 722
Hpy166II GTNNAC 2 cut(s) 164, 340
Hpy188I TCNGA 7 cut(s) 70, 132, 226, 547, 585, 606, 1189
Hpy188III TCNNGA 5 cut(s) 275, 396, 566, 594, 637
Hpy8I GTNNAC 2 cut(s) 164, 340
Hpy99I CGWCG 1 cut(s) 820
HpyAV CCTTC 3 cut(s) 469, 658, 1126
HpyCH4III ACNGT 2 cut(s) 850, 949
HpyCH4IV ACGT 1 cut(s) 924
HpyCH4V TGCA 6 cut(s) 53, 426, 658, 692, 746, 922
HpyF10VI GCNNNNNNNGC 4 cut(s) 31, 59, 494, 1078
HpyF3I CTNAG 2 cut(s) 605, 1086
HpySE526I ACGT 1 cut(s) 924
Hsp92II CATG 6 cut(s) 297, 376, 426, 649, 1030, 1042
HspAI GCGC 2 cut(s) 330, 674
KroI GCCGGC 2 cut(s) 723, 886
KroNI GCCGGC 2 cut(s) 725, 888
Kzo9I GATC 4 cut(s) 547, 562, 585, 1106
LmnI GCTCC 4 cut(s) 287, 295, 398, 586
Lsp1109I GCAGC 3 cut(s) 509, 642, 676
LweI GCATC 1 cut(s) 810
MaeI CTAG 4 cut(s) 77, 159, 1008, 1124
MaeII ACGT 1 cut(s) 924
MaeIII GTNAC 3 cut(s) 641, 963, 1162
MalI GATC 4 cut(s) 549, 564, 587, 1108
MboI GATC 4 cut(s) 547, 562, 585, 1106
MboII GAAGA 1 cut(s) 102
MflI RGATCY 1 cut(s) 1106
MhlI GDGCHC 2 cut(s) 292, 403
MluCI AATT 2 cut(s) 344, 1050
MlyI GAGTC 2 cut(s) 59, 215
MmeI TCCRAC 1 cut(s) 1041
MroNI GCCGGC 2 cut(s) 723, 886
MroXI GAANNNNTTC 1 cut(s) 573
MseI TTAA 2 cut(s) 786, 1195
MslI CAYNNNNRTG 2 cut(s) 650, 862
MspA1I CMGCKG 2 cut(s) 62, 500
MspI CCGG 4 cut(s) 382, 454, 724, 887
MspR9I CCNGG 5 cut(s) 383, 454, 455, 511, 619
MvaI CCWGG 2 cut(s) 511, 619
MvnI CGCG 1 cut(s) 676
MwoI GCNNNNNNNGC 4 cut(s) 31, 59, 494, 1078
NaeI GCCGGC 2 cut(s) 725, 888
NciI CCSGG 3 cut(s) 383, 454, 455
NcoI CCATGG 1 cut(s) 1026
NdeI CATATG 1 cut(s) 1158
NdeII GATC 4 cut(s) 547, 562, 585, 1106
NgoMIV GCCGGC 2 cut(s) 723, 886
NlaIII CATG 6 cut(s) 297, 376, 426, 649, 1030, 1042
NlaIV GGNNCC 4 cut(s) 18, 138, 582, 616
NmuCI GTSAC 1 cut(s) 641
NspI RCATGY 2 cut(s) 376, 1042
NspV TTCGAA 1 cut(s) 473
PaeR7I CTCGAG 1 cut(s) 311
PceI AGGCCT 1 cut(s) 438
PciI ACATGT 1 cut(s) 372
PcsI WCGNNNNNNNCGW 1 cut(s) 384
PdiI GCCGGC 2 cut(s) 725, 888
PdmI GAANNNNTTC 1 cut(s) 573
PfeI GAWTC 3 cut(s) 271, 597, 969
PkrI GCNGC 8 cut(s) 27, 499, 657, 678, 681, 691, 699, 729
PleI GAGTC 2 cut(s) 59, 215
PmaCI CACGTG 1 cut(s) 925
PmlI CACGTG 1 cut(s) 925
PpsI GAGTC 2 cut(s) 59, 215
Ppu21I YACGTR 1 cut(s) 925
PpuMI RGGWCCY 2 cut(s) 17, 316
PscI ACATGT 1 cut(s) 372
Psp124BI GAGCTC 1 cut(s) 292
Psp5II RGGWCCY 2 cut(s) 17, 316
Psp6I CCWGG 2 cut(s) 509, 617
PspCI CACGTG 1 cut(s) 925
PspGI CCWGG 2 cut(s) 509, 617
PspN4I GGNNCC 4 cut(s) 18, 138, 582, 616
PspPI GGNCC 6 cut(s) 17, 137, 316, 365, 451, 507
PspPPI RGGWCCY 2 cut(s) 17, 316
PspXI VCTCGAGB 1 cut(s) 311
PstI CTGCAG 3 cut(s) 55, 694, 748
PsuI RGATCY 1 cut(s) 1106
RsaI GTAC 2 cut(s) 847, 915
RsaNI GTAC 2 cut(s) 846, 914
RseI CAYNNNNRTG 2 cut(s) 650, 862
SacI GAGCTC 1 cut(s) 292
SalI GTCGAC 1 cut(s) 338
SaqAI TTAA 2 cut(s) 786, 1195
SatI GCNGC 8 cut(s) 26, 498, 656, 677, 680, 690, 698, 728
Sau3AI GATC 4 cut(s) 547, 562, 585, 1106
Sau96I GGNCC 6 cut(s) 17, 137, 316, 365, 451, 507
SchI GAGTC 2 cut(s) 59, 215
ScrFI CCNGG 5 cut(s) 383, 454, 455, 511, 619
SduI GDGCHC 2 cut(s) 292, 403
SfaNI GCATC 1 cut(s) 810
SfcI CTRYAG 4 cut(s) 51, 690, 744, 849
Sfr274I CTCGAG 1 cut(s) 311
SfuI TTCGAA 1 cut(s) 473
SinI GGWCC 3 cut(s) 17, 316, 507
SlaI CTCGAG 1 cut(s) 311
SmaI CCCGGG 1 cut(s) 455
SmiMI CAYNNNNRTG 2 cut(s) 650, 862
SmlI CTYRAG 2 cut(s) 311, 320
SmoI CTYRAG 2 cut(s) 311, 320
Sse9I AATT 2 cut(s) 344, 1050
SseBI AGGCCT 1 cut(s) 438
SspMI CTAG 4 cut(s) 77, 159, 1008, 1124
SstI GAGCTC 1 cut(s) 292
StuI AGGCCT 1 cut(s) 438
StyD4I CCNGG 5 cut(s) 381, 452, 453, 509, 617
StyI CCWWGG 2 cut(s) 247, 1026
TaaI ACNGT 2 cut(s) 850, 949
TaiI ACGT 1 cut(s) 927
TaqI TCGA 7 cut(s) 269, 312, 339, 387, 473, 567, 818
TaqII GACCGA 2 cut(s) 860, 1082
TasI AATT 2 cut(s) 344, 1050
TatI WGTACW 1 cut(s) 845
TauI GCSGC 5 cut(s) 28, 679, 682, 700, 730
TfiI GAWTC 3 cut(s) 271, 597, 969
Tru1I TTAA 2 cut(s) 786, 1195
Tru9I TTAA 2 cut(s) 786, 1195
TscAI CASTG 3 cut(s) 562, 753, 1090
TseFI GTSAC 1 cut(s) 641
TseI GCWGC 3 cut(s) 497, 655, 689
Tsp45I GTSAC 1 cut(s) 641
TspDTI ATGAA 5 cut(s) 372, 411, 589, 924, 961
TspGWI ACGGA 1 cut(s) 520
TspMI CCCGGG 1 cut(s) 453
TspRI CASTG 3 cut(s) 562, 753, 1090
VpaK11BI GGWCC 3 cut(s) 17, 316, 507
XapI RAATTY 1 cut(s) 1050
XceI RCATGY 2 cut(s) 376, 1042
XhoI CTCGAG 1 cut(s) 311
XmaI CCCGGG 1 cut(s) 453
XmiI GTMKAC 1 cut(s) 339
XmnI GAANNNNTTC 1 cut(s) 573
XspI CTAG 4 cut(s) 77, 159, 1008, 1124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.