Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001644.1

Orthogroup ID

OG0013752

Physical Location & Seq

Genomic Coordinates Reverse (-)

124456 .. 128799

Gene Structure 4344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001644.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

atgcaattcgacgggtctgaatctgtgagcatgggtccaacaacccaaaggttacagtctctgtcagcctcggatactagagggaagcatcagatgttggctgagttgaaacggttcgagcaagaagctagattcttagaggaagagctggtttatagtgttctcgcctctgcattccggtccgggagaggattgatggtgcagagatgtagtgggcggtcgaggcggcggtgtggtccagggagagtggaggtctctccgttttcgggcagcacggatcgttctcgatctgttcttctcggatccggagcggaggcagtgatgcagcaatacttgcaagttataggctactgcgacgaatggcttcggcgtggcggcttgttgctgagtggcggcgatttggtggcgttggagcttgccggaggtgggtgtggctgcttgcagcgcgtggcttctgtgagggtggttgcttggttaaaaataagtcccccctctgttgggcgggggtgtgggtgtgtccggtctgagtcgatgccgttgttctggtgtcatggtcgttttgtagttccatctctatggcttagtctgttgactatgctgcctgttcttcaacgtgacgaggaattacccttacacgtggtctgcttattttgggacacggtgtcggaaagggtgatgcgattcttcgtcaggttgggtgcagggttgtatctttgcactagagtttggttactgctctctgtagcccgcttgaatgggcgtaattggtggtcggggtttggacttgtttggttcatgaaggtcatttcatatgacctccttgtcacctatggtgtttctgaggttgtgcgcgacccatcaatcattcgatctgtggatgagggtggagttgtagcttgtcatatctgtgctttgcaggctgtttgcttggtttttgaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 map04011

Pfam Domains

Protein Families

G-gamma

Protein Analysis

313

Amino Acids

34.72

Weight (kDa)

8.72

Isoelectric Point (pI)

56.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013752)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0363721 RchiOBHm_Chr2g0173981 RchiOBHm_Chr4g0394391
rosa_multiflora	Rmu_sc0001644.1_g000025 Rmu_sc0003301.1_g000014 Rmu_sc0005592.1_g000022 Rmu_sc0009451.1_g000005 Rmu_sc0033532.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433970 Rroxscaffold_1G00043050 Rroxscaffold_4G00311030 Rroxscaffold_5G00368050 Rroxscaffold_6G00395850 Rroxscaffold_6G00404020 Rroxscaffold_7G00182210
rosa_rugosa	Rorug05G0195200
rosa_samantha	Rh4DG298400
rosa_wichuraiana	Rw4G008430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	821
AccBSI	CCGCTC	1 cut(s)	311
AccII	CGCG	2 cut(s)	447, 852
AccIII	TCCGGA	1 cut(s)	305
AciI	CCGC	8 cut(s)	217, 226, 229, 311, 375, 393, 502, 748
AclWI	GGATC	3 cut(s)	285, 297, 310
AcvI	CACGTG	1 cut(s)	637
AfiI	CCNNNNNNNGG	4 cut(s)	266, 426, 497, 498
AflIII	ACRYGT	1 cut(s)	634
AgsI	TTSAA	4 cut(s)	109, 611, 754, 938
AhdI	GACNNNNNGTC	1 cut(s)	661
AjnI	CCWGG	1 cut(s)	238
AluBI	AGCT	4 cut(s)	128, 148, 415, 896
AluI	AGCT	4 cut(s)	128, 148, 415, 896
Alw26I	GTCTC	2 cut(s)	63, 259
AlwI	GGATC	3 cut(s)	285, 297, 310
AlwNI	CAGNNNCTG	1 cut(s)	61
Aor13HI	TCCGGA	1 cut(s)	305
ApeKI	GCWGC	5 cut(s)	270, 325, 435, 442, 598
Asp700I	GAANNNNTTC	2 cut(s)	113, 363
AspLEI	GCGC	2 cut(s)	447, 852
AspS9I	GGNCC	3 cut(s)	35, 180, 236
AsuC2I	CCSGG	1 cut(s)	184
AsuHPI	GGTGA	2 cut(s)	685, 817
AvaII	GGWCC	3 cut(s)	35, 180, 236
BamHI	GGATCC	1 cut(s)	302
BbrPI	CACGTG	1 cut(s)	637
BbvI	GCAGC	5 cut(s)	282, 337, 422, 454, 585
BccI	CCATC	3 cut(s)	190, 577, 865
BceAI	ACGGC	1 cut(s)	520
BciT130I	CCWGG	1 cut(s)	240
BciVI	GTATCC	1 cut(s)	67
BcnI	CCSGG	1 cut(s)	184
BcoDI	GTCTC	2 cut(s)	63, 259
BfaI	CTAG	3 cut(s)	78, 129, 720
BfmI	CTRYAG	1 cut(s)	741
BfuI	GTATCC	1 cut(s)	67
BisI	GCNGC	8 cut(s)	227, 271, 326, 376, 394, 436, 443, 599
BlsI	GCNGC	8 cut(s)	228, 272, 327, 377, 395, 437, 444, 600
Bme1390I	CCNGG	2 cut(s)	184, 240
Bme18I	GGWCC	3 cut(s)	35, 180, 236
BmeRI	GACNNNNNGTC	1 cut(s)	661
BmgT120I	GGNCC	3 cut(s)	35, 180, 236
BmiI	GGNNCC	2 cut(s)	36, 304
BmrFI	CCNGG	2 cut(s)	184, 240
BmsI	GCATC	4 cut(s)	97, 312, 522, 666
BpuMI	CCSGG	1 cut(s)	184
BsaAI	YACGTR	1 cut(s)	637
BsaI	GGTCTC	1 cut(s)	259
BsaJI	CCNNGG	2 cut(s)	69, 239
BsaWI	WCCGGW	3 cut(s)	177, 305, 519
Bsc4I	CCNNNNNNNGG	4 cut(s)	266, 426, 497, 498
BseAI	TCCGGA	1 cut(s)	305
BseBI	CCWGG	1 cut(s)	240
BseDI	CCNNGG	2 cut(s)	69, 239
BseGI	GGATG	1 cut(s)	883
BseLI	CCNNNNNNNGG	4 cut(s)	266, 426, 497, 498
BseMII	CTCAG	4 cut(s)	93, 377, 516, 831
BseXI	GCAGC	5 cut(s)	282, 337, 422, 454, 585
BsgI	GTGCAG	2 cut(s)	221, 720
Bsh1236I	CGCG	2 cut(s)	447, 852
Bsh1285I	CGRYCG	1 cut(s)	221
BsiEI	CGRYCG	1 cut(s)	221
BsiSI	CCGG	5 cut(s)	178, 183, 306, 420, 520
BslFI	GGGAC	2 cut(s)	471, 668
BslI	CCNNNNNNNGG	4 cut(s)	266, 426, 497, 498
BsmAI	GTCTC	2 cut(s)	63, 259
BsmFI	GGGAC	2 cut(s)	471, 668
BsmI	GAATGC	1 cut(s)	173
Bso31I	GGTCTC	1 cut(s)	259
Bsp13I	TCCGGA	1 cut(s)	305
Bsp143I	GATC	4 cut(s)	277, 287, 302, 869
BspACI	CCGC	8 cut(s)	217, 226, 229, 311, 375, 393, 502, 748
BspCNI	CTCAG	4 cut(s)	94, 378, 517, 832
BspEI	TCCGGA	1 cut(s)	305
BspFNI	CGCG	2 cut(s)	447, 852
BspHI	TCATGA	1 cut(s)	795
BspLI	GGNNCC	2 cut(s)	36, 304
BspPI	GGATC	3 cut(s)	285, 297, 310
BspQI	GCTCTTC	1 cut(s)	138
BspTNI	GGTCTC	1 cut(s)	259
BsrBI	CCGCTC	1 cut(s)	311
BssECI	CCNNGG	2 cut(s)	69, 239
BssMI	GATC	4 cut(s)	277, 287, 302, 869
Bst2UI	CCWGG	1 cut(s)	240
Bst4CI	ACNGT	3 cut(s)	57, 114, 661
Bst6I	CTCTTC	1 cut(s)	138
BstAPI	GCANNNNNTGC	1 cut(s)	334
BstBAI	YACGTR	1 cut(s)	637
BstC8I	GCNNGC	4 cut(s)	417, 440, 748, 918
BstDEI	CTNAG	6 cut(s)	102, 136, 386, 525, 581, 840
BstF5I	GGATG	1 cut(s)	883
BstFNI	CGCG	2 cut(s)	447, 852
BstHHI	GCGC	2 cut(s)	447, 852
BstKTI	GATC	4 cut(s)	280, 290, 305, 872
BstMAI	GTCTC	2 cut(s)	63, 259
BstMBI	GATC	4 cut(s)	277, 287, 302, 869
BstMCI	CGRYCG	1 cut(s)	221
BstMWI	GCNNNNNNNGC	4 cut(s)	223, 334, 444, 917
BstNI	CCWGG	1 cut(s)	240
BstSCI	CCNGG	2 cut(s)	182, 238
BstSFI	CTRYAG	1 cut(s)	741
BstUI	CGCG	2 cut(s)	447, 852
BstV1I	GCAGC	5 cut(s)	282, 337, 422, 454, 585
BstX2I	RGATCY	1 cut(s)	302
BstXI	CCANNNNNNTGG	1 cut(s)	576
BstYI	RGATCY	1 cut(s)	302
BsuI	GTATCC	1 cut(s)	67
BtsCI	GGATG	1 cut(s)	883
BtsI	GCAGTG	1 cut(s)	324
BtsIMutI	CAGTG	1 cut(s)	324
Cac8I	GCNNGC	4 cut(s)	417, 440, 748, 918
CaiI	CAGNNNCTG	1 cut(s)	61
CciI	TCATGA	1 cut(s)	795
CfoI	GCGC	2 cut(s)	447, 852
Cfr13I	GGNCC	3 cut(s)	35, 180, 236
CpoI	CGGWCCG	1 cut(s)	180
CspI	CGGWCCG	1 cut(s)	180
CviAII	CATG	3 cut(s)	31, 551, 796
DdeI	CTNAG	6 cut(s)	102, 136, 386, 525, 581, 840
DpnI	GATC	4 cut(s)	279, 289, 304, 871
DpnII	GATC	4 cut(s)	277, 287, 302, 869
DrdI	GACNNNNNNGTC	1 cut(s)	821
DriI	GACNNNNNGTC	1 cut(s)	661
DseDI	GACNNNNNNGTC	1 cut(s)	821
Eam1104I	CTCTTC	1 cut(s)	138
Eam1105I	GACNNNNNGTC	1 cut(s)	661
EarI	CTCTTC	1 cut(s)	138
Eco31I	GGTCTC	1 cut(s)	259
Eco47I	GGWCC	3 cut(s)	35, 180, 236
Eco72I	CACGTG	1 cut(s)	637
EcoRII	CCWGG	1 cut(s)	238
FaeI	CATG	3 cut(s)	34, 554, 799
FaqI	GGGAC	2 cut(s)	471, 668
FatI	CATG	3 cut(s)	30, 550, 795
FauI	CCCGC	2 cut(s)	495, 755
FauNDI	CATATG	1 cut(s)	811
Fnu4HI	GCNGC	8 cut(s)	227, 271, 326, 376, 394, 436, 443, 599
FokI	GGATG	1 cut(s)	890
Fsp4HI	GCNGC	8 cut(s)	227, 271, 326, 376, 394, 436, 443, 599
FspBI	CTAG	3 cut(s)	78, 129, 720
GlaI	GCGC	2 cut(s)	446, 851
GluI	GCNGC	8 cut(s)	227, 271, 326, 376, 394, 436, 443, 599
HapII	CCGG	5 cut(s)	178, 183, 306, 420, 520
HhaI	GCGC	2 cut(s)	447, 852
Hin1II	CATG	3 cut(s)	34, 554, 799
Hin6I	GCGC	2 cut(s)	445, 850
HinP1I	GCGC	2 cut(s)	445, 850
HincII	GTYRAC	1 cut(s)	591
HindII	GTYRAC	1 cut(s)	591
HinfI	GANTC	4 cut(s)	20, 132, 527, 681
HpaII	CCGG	5 cut(s)	178, 183, 306, 420, 520
HphI	GGTGA	2 cut(s)	685, 817
Hpy166II	GTNNAC	1 cut(s)	591
Hpy188I	TCNGA	7 cut(s)	19, 73, 93, 302, 526, 667, 841
Hpy188III	TCNNGA	3 cut(s)	285, 306, 796
Hpy8I	GTNNAC	1 cut(s)	591
Hpy99I	CGWCG	2 cut(s)	14, 359
HpyAV	CCTTC	1 cut(s)	793
HpyCH4III	ACNGT	3 cut(s)	57, 114, 661
HpyCH4IV	ACGT	2 cut(s)	613, 636
HpyCH4V	TGCA	9 cut(s)	4, 173, 202, 325, 337, 442, 701, 717, 916
HpyF10VI	GCNNNNNNNGC	4 cut(s)	223, 334, 444, 917
HpyF3I	CTNAG	6 cut(s)	102, 136, 386, 525, 581, 840
HpySE526I	ACGT	2 cut(s)	613, 636
Hsp92II	CATG	3 cut(s)	34, 554, 799
HspAI	GCGC	2 cut(s)	445, 850
Kpn2I	TCCGGA	1 cut(s)	305
Kzo9I	GATC	4 cut(s)	277, 287, 302, 869
LguI	GCTCTTC	1 cut(s)	138
LmnI	GCTCC	2 cut(s)	308, 412
Lsp1109I	GCAGC	5 cut(s)	282, 337, 422, 454, 585
LweI	GCATC	4 cut(s)	97, 312, 522, 666
MaeI	CTAG	3 cut(s)	78, 129, 720
MaeII	ACGT	2 cut(s)	613, 636
MaeIII	GTNAC	4 cut(s)	51, 614, 729, 823
MalI	GATC	4 cut(s)	279, 289, 304, 871
MbiI	CCGCTC	1 cut(s)	311
MboI	GATC	4 cut(s)	277, 287, 302, 869
MboII	GAAGA	4 cut(s)	155, 287, 599, 676
MflI	RGATCY	1 cut(s)	302
MluCI	AATT	3 cut(s)	5, 623, 763
MlyI	GAGTC	1 cut(s)	536
MmeI	TCCRAC	3 cut(s)	62, 390, 645
MroI	TCCGGA	1 cut(s)	305
MroXI	GAANNNNTTC	2 cut(s)	113, 363
MseI	TTAA	1 cut(s)	476
MslI	CAYNNNNRTG	2 cut(s)	574, 906
MspI	CCGG	5 cut(s)	178, 183, 306, 420, 520
MspR9I	CCNGG	2 cut(s)	184, 240
Mva1269I	GAATGC	1 cut(s)	173
MvaI	CCWGG	1 cut(s)	240
MvnI	CGCG	2 cut(s)	447, 852
MwoI	GCNNNNNNNGC	4 cut(s)	223, 334, 444, 917
NciI	CCSGG	1 cut(s)	184
NdeI	CATATG	1 cut(s)	811
NdeII	GATC	4 cut(s)	277, 287, 302, 869
NlaIII	CATG	3 cut(s)	34, 554, 799
NlaIV	GGNNCC	2 cut(s)	36, 304
NmuCI	GTSAC	2 cut(s)	614, 823
PagI	TCATGA	1 cut(s)	795
PciSI	GCTCTTC	1 cut(s)	138
PctI	GAATGC	1 cut(s)	173
PdmI	GAANNNNTTC	2 cut(s)	113, 363
PfeI	GAWTC	3 cut(s)	20, 132, 681
PfoI	TCCNGGA	1 cut(s)	182
PkrI	GCNGC	8 cut(s)	228, 272, 327, 377, 395, 437, 444, 600
PleI	GAGTC	1 cut(s)	535
PmaCI	CACGTG	1 cut(s)	637
PmlI	CACGTG	1 cut(s)	637
PpsI	GAGTC	1 cut(s)	535
Ppu21I	YACGTR	1 cut(s)	637
Psp6I	CCWGG	1 cut(s)	238
PspCI	CACGTG	1 cut(s)	637
PspGI	CCWGG	1 cut(s)	238
PspN4I	GGNNCC	2 cut(s)	36, 304
PspPI	GGNCC	3 cut(s)	35, 180, 236
PstNI	CAGNNNCTG	1 cut(s)	61
PsuI	RGATCY	1 cut(s)	302
RseI	CAYNNNNRTG	2 cut(s)	574, 906
Rsr2I	CGGWCCG	1 cut(s)	180
RsrII	CGGWCCG	1 cut(s)	180
SapI	GCTCTTC	1 cut(s)	138
SaqAI	TTAA	1 cut(s)	476
SatI	GCNGC	8 cut(s)	227, 271, 326, 376, 394, 436, 443, 599
Sau3AI	GATC	4 cut(s)	277, 287, 302, 869
Sau96I	GGNCC	3 cut(s)	35, 180, 236
SchI	GAGTC	1 cut(s)	536
ScrFI	CCNGG	2 cut(s)	184, 240
SfaNI	GCATC	4 cut(s)	97, 312, 522, 666
SfcI	CTRYAG	1 cut(s)	741
SinI	GGWCC	3 cut(s)	35, 180, 236
SmiMI	CAYNNNNRTG	2 cut(s)	574, 906
Sse9I	AATT	3 cut(s)	5, 623, 763
SsiI	CCGC	8 cut(s)	217, 226, 229, 311, 375, 393, 502, 748
SspMI	CTAG	3 cut(s)	78, 129, 720
StyD4I	CCNGG	2 cut(s)	182, 238
TaaI	ACNGT	3 cut(s)	57, 114, 661
TaiI	ACGT	2 cut(s)	616, 639
TaqI	TCGA	6 cut(s)	9, 117, 221, 286, 530, 868
TasI	AATT	3 cut(s)	5, 623, 763
TauI	GCSGC	3 cut(s)	229, 378, 396
TfiI	GAWTC	3 cut(s)	20, 132, 681
Tru1I	TTAA	1 cut(s)	476
Tru9I	TTAA	1 cut(s)	476
TscAI	CASTG	1 cut(s)	324
TseFI	GTSAC	2 cut(s)	614, 823
TseI	GCWGC	5 cut(s)	270, 325, 435, 442, 598
Tsp45I	GTSAC	2 cut(s)	614, 823
TspDTI	ATGAA	3 cut(s)	784, 798, 812
TspGWI	ACGGA	2 cut(s)	249, 290
TspRI	CASTG	1 cut(s)	324
VpaK11BI	GGWCC	3 cut(s)	35, 180, 236
XmnI	GAANNNNTTC	2 cut(s)	113, 363
XspI	CTAG	3 cut(s)	78, 129, 720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.