Rroxscaffold_6G00395850

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0013752
Physical Location & Seq
Reverse (-)
17012674 .. 17013644
971 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00395850.1

Sequence Viewer

Length: 312 bp
ATGGTTCGGAGGTGTAGTGGGCGTTCGGGGGCAGCGGTGTGGTCCGGGGAGGGTGGAGTTTTCTCCGTTTTCGGGCAGCACGGATCGTTCTCGATCCGTCCTTCTCGGATCCGGGCGGAGGCGGTGATGCGGCAGCGACCCCGATTGGATGGGCGTAAATGGTGGTCGGGGATTGGACTTGTTTGGTTCATGAAGGTCATTTCAAATGACCTCCTTGTCACCGATGGTGCTTTTGAGGCTGTGCGCGACTCATCAATCATTCGACCTGTGGATGAGGGTGGAGTTGCAGCTTGTCACATCCGTGGTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.29

Weight (kDa)

11.01

Isoelectric Point (pI)

41.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 215
AccII CGCG 1 cut(s) 246
AciI CCGC 4 cut(s) 35, 116, 122, 130
AclWI GGATC 4 cut(s) 88, 91, 103, 116
AfiI CCNNNNNNNGG 2 cut(s) 72, 118
AgsI TTSAA 1 cut(s) 204
AleI CACNNNNGTG 1 cut(s) 300
AluBI AGCT 1 cut(s) 290
AluI AGCT 1 cut(s) 290
AlwI GGATC 4 cut(s) 88, 91, 103, 116
ApeKI GCWGC 4 cut(s) 32, 76, 133, 287
AspLEI GCGC 1 cut(s) 246
AspS9I GGNCC 1 cut(s) 42
AsuC2I CCSGG 2 cut(s) 46, 113
AsuHPI GGTGA 2 cut(s) 136, 211
AvaII GGWCC 1 cut(s) 42
BamHI GGATCC 1 cut(s) 108
BbvI GCAGC 4 cut(s) 44, 88, 145, 299
BccI CCATC 2 cut(s) 143, 218
BcnI CCSGG 2 cut(s) 46, 113
BisI GCNGC 5 cut(s) 33, 77, 131, 134, 288
BlsI GCNGC 5 cut(s) 34, 78, 132, 135, 289
Bme1390I CCNGG 2 cut(s) 46, 113
Bme18I GGWCC 1 cut(s) 42
BmgT120I GGNCC 1 cut(s) 42
BmiI GGNNCC 1 cut(s) 110
BmrFI CCNGG 2 cut(s) 46, 113
BmsI GCATC 1 cut(s) 117
BpuMI CCSGG 2 cut(s) 46, 113
BsaJI CCNNGG 2 cut(s) 45, 301
BsaXI ACNNNNNCTCC 1 cut(s) 31
Bsc4I CCNNNNNNNGG 2 cut(s) 72, 118
BseDI CCNNGG 2 cut(s) 45, 301
BseGI GGATG 3 cut(s) 154, 277, 297
BseLI CCNNNNNNNGG 2 cut(s) 72, 118
BseXI GCAGC 4 cut(s) 44, 88, 145, 299
Bsh1236I CGCG 1 cut(s) 246
BsiSI CCGG 2 cut(s) 45, 112
BslI CCNNNNNNNGG 2 cut(s) 72, 118
Bsp143I GATC 3 cut(s) 83, 93, 108
BspACI CCGC 4 cut(s) 35, 116, 122, 130
BspFNI CGCG 1 cut(s) 246
BspHI TCATGA 1 cut(s) 189
BspLI GGNNCC 1 cut(s) 110
BspPI GGATC 4 cut(s) 88, 91, 103, 116
BssECI CCNNGG 2 cut(s) 45, 301
BssMI GATC 3 cut(s) 83, 93, 108
BstDSI CCRYGG 1 cut(s) 301
BstF5I GGATG 3 cut(s) 154, 277, 297
BstFNI CGCG 1 cut(s) 246
BstHHI GCGC 1 cut(s) 246
BstKTI GATC 3 cut(s) 86, 96, 111
BstMBI GATC 3 cut(s) 83, 93, 108
BstMWI GCNNNNNNNGC 1 cut(s) 236
BstSCI CCNGG 2 cut(s) 44, 111
BstUI CGCG 1 cut(s) 246
BstV1I GCAGC 4 cut(s) 44, 88, 145, 299
BstX2I RGATCY 1 cut(s) 108
BstYI RGATCY 1 cut(s) 108
BtgI CCRYGG 1 cut(s) 301
BtsCI GGATG 3 cut(s) 154, 277, 297
CciI TCATGA 1 cut(s) 189
CfoI GCGC 1 cut(s) 246
Cfr13I GGNCC 1 cut(s) 42
CviAII CATG 1 cut(s) 190
CviJI RGCY 2 cut(s) 239, 290
CviKI_1 RGCY 2 cut(s) 239, 290
DpnI GATC 3 cut(s) 85, 95, 110
DpnII GATC 3 cut(s) 83, 93, 108
DrdI GACNNNNNNGTC 1 cut(s) 215
DseDI GACNNNNNNGTC 1 cut(s) 215
EciI GGCGGA 1 cut(s) 131
Eco47I GGWCC 1 cut(s) 42
FaeI CATG 1 cut(s) 193
FaiI YATR 1 cut(s) 191
FatI CATG 1 cut(s) 189
Fnu4HI GCNGC 5 cut(s) 33, 77, 131, 134, 288
FokI GGATG 3 cut(s) 161, 284, 284
Fsp4HI GCNGC 5 cut(s) 33, 77, 131, 134, 288
GlaI GCGC 1 cut(s) 245
GluI GCNGC 5 cut(s) 33, 77, 131, 134, 288
HapII CCGG 2 cut(s) 45, 112
HhaI GCGC 1 cut(s) 246
Hin1II CATG 1 cut(s) 193
Hin6I GCGC 1 cut(s) 244
HinP1I GCGC 1 cut(s) 244
HinfI GANTC 1 cut(s) 248
HpaII CCGG 2 cut(s) 45, 112
HphI GGTGA 2 cut(s) 136, 211
Hpy188I TCNGA 2 cut(s) 9, 108
Hpy188III TCNNGA 2 cut(s) 91, 190
HpyAV CCTTC 2 cut(s) 111, 187
HpyCH4V TGCA 1 cut(s) 287
HpyF10VI GCNNNNNNNGC 1 cut(s) 236
Hsp92II CATG 1 cut(s) 193
HspAI GCGC 1 cut(s) 244
Kzo9I GATC 3 cut(s) 83, 93, 108
LpnPI CCDG 3 cut(s) 58, 125, 279
Lsp1109I GCAGC 4 cut(s) 44, 88, 145, 299
LweI GCATC 1 cut(s) 117
MaeIII GTNAC 2 cut(s) 217, 293
MalI GATC 3 cut(s) 85, 95, 110
MboI GATC 3 cut(s) 83, 93, 108
MflI RGATCY 1 cut(s) 108
MlyI GAGTC 1 cut(s) 242
MnlI CCTC 6 cut(s) 3, 43, 112, 221, 229, 268
MslI CAYNNNNRTG 1 cut(s) 300
MspA1I CMGCKG 1 cut(s) 35
MspI CCGG 2 cut(s) 45, 112
MspR9I CCNGG 2 cut(s) 46, 113
MvnI CGCG 1 cut(s) 246
MwoI GCNNNNNNNGC 1 cut(s) 236
NciI CCSGG 2 cut(s) 46, 113
NdeII GATC 3 cut(s) 83, 93, 108
NlaIII CATG 1 cut(s) 193
NlaIV GGNNCC 1 cut(s) 110
NmuCI GTSAC 2 cut(s) 217, 293
OliI CACNNNNGTG 1 cut(s) 300
PagI TCATGA 1 cut(s) 189
PkrI GCNGC 5 cut(s) 34, 78, 132, 135, 289
PleI GAGTC 1 cut(s) 242
PpsI GAGTC 1 cut(s) 242
PspN4I GGNNCC 1 cut(s) 110
PspPI GGNCC 1 cut(s) 42
PsrI GAACNNNNNNTAC 2 cut(s) 7, 39
PsuI RGATCY 1 cut(s) 108
RseI CAYNNNNRTG 1 cut(s) 300
SatI GCNGC 5 cut(s) 33, 77, 131, 134, 288
Sau3AI GATC 3 cut(s) 83, 93, 108
Sau96I GGNCC 1 cut(s) 42
SchI GAGTC 1 cut(s) 242
ScrFI CCNGG 2 cut(s) 46, 113
SetI ASST 5 cut(s) 14, 198, 213, 268, 292
SfaNI GCATC 1 cut(s) 117
SinI GGWCC 1 cut(s) 42
SmiMI CAYNNNNRTG 1 cut(s) 300
SsiI CCGC 4 cut(s) 35, 116, 122, 130
StyD4I CCNGG 2 cut(s) 44, 111
TaqI TCGA 2 cut(s) 92, 262
TauI GCSGC 1 cut(s) 133
TseFI GTSAC 2 cut(s) 217, 293
TseI GCWGC 4 cut(s) 32, 76, 133, 287
Tsp45I GTSAC 2 cut(s) 217, 293
TspDTI ATGAA 2 cut(s) 178, 206
TspGWI ACGGA 4 cut(s) 55, 86, 96, 290
VpaK11BI GGWCC 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.