Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0013752

Physical Location & Seq

Genomic Coordinates Reverse (-)

19179839 .. 19187054

Gene Structure 7216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0195200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGCCGCGGTTGCTGAGATTGCCGGTGAGGCAGCCTCTGCCAACAACCAGAACTTGGATTCAATATCAAAACCCGTATCTGAATCGAAACCCAAATCGGAATTCGATGTGCAGAAGCTGGTGGATATGTTCACCAAGTTGAACCCTTTAGCCAAAGAGTTCTTCCCTTCATCTTACTCACCTCTGCAAAATCACAATTTTGATAACTCTTTTGCTGTCAATAACAATAAGCTCTTGCCCACTGACAATCAGGCCAACAATCGAAGGAGAAGAAATAACTATAATCAGGGGAAGAGAAGGTTGAGTGGGAGAGCCTTCAGAGCTGAGCGCGAAAATAGTATTAGACGAACAGTTTATGTTTCTGATATTGATCAGCAAGTTACCGAAGAGCGTCTTGCTGCCATATTTAGTAATTGTGGACAAGTTGTTGACTGCCGAATTTGTGGTGATCCGCATTCAGTGCTCCGTTTTGCATTTGTGGAGTTTGCTGATGAGCATGGTGCGAGAGCAGCCTTGAACCTTGGTGGGACGATGCTAGGGTATTACCCCGTTAGGGTCTTACCTTCAAAAACTGCCATCCTTCCTGTGAATCCTACATTCCTCCCTAGGTCAGAAGATGAACGGGAAATGTGTAGCAGGACTGTATACTGTACAAATATCGATAAGAAGGTTTCTCAAGCTGAAGTCAAGAGTTTCTTTGAAACAGCTTGTGGTGAGGTTACTCGTTTGAGGCTTTTGGGAGATCATGTGCATTCAACCCGTATAGCTTTTGTTGAATTTGCAATGGCAGAAAGTGCCATACTTGCACTGAACTGTAGCGGAATGGTGTTGGGAACACAACCCATCAGGGTAAGTCCTTCAAAGACACCAGTGCGGCCACGTGTCACTCGTCCAACGTTGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

301

Amino Acids

33.58

Weight (kDa)

9.09

Isoelectric Point (pI)

46.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	118 - 180	1.7e-12	RNA recognition motif
RRM_1	PF00076	215 - 282	7e-09	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013752)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0363721 RchiOBHm_Chr2g0173981 RchiOBHm_Chr4g0394391
rosa_multiflora	Rmu_sc0001644.1_g000025 Rmu_sc0003301.1_g000014 Rmu_sc0005592.1_g000022 Rmu_sc0009451.1_g000005 Rmu_sc0033532.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433970 Rroxscaffold_1G00043050 Rroxscaffold_4G00311030 Rroxscaffold_5G00368050 Rroxscaffold_6G00395850 Rroxscaffold_6G00404020 Rroxscaffold_7G00182210
rosa_rugosa	Rorug05G0195200
rosa_samantha	Rh4DG298400
rosa_wichuraiana	Rw4G008430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	55
AccI	GTMKAC	1 cut(s)	645
AccII	CGCG	2 cut(s)	8, 330
AciI	CCGC	5 cut(s)	6, 8, 452, 819, 874
AclI	AACGTT	1 cut(s)	896
AclWI	GGATC	1 cut(s)	443
AcoI	YGGCCR	2 cut(s)	3, 875
AcsI	RAATTY	3 cut(s)	101, 438, 776
AcuI	CTGAAG	2 cut(s)	301, 702
AcvI	CACGTG	1 cut(s)	881
AfaI	GTAC	1 cut(s)	652
AfiI	CCNNNNNNNGG	2 cut(s)	55, 553
AflIII	ACRYGT	1 cut(s)	880
AgsI	TTSAA	8 cut(s)	63, 142, 517, 567, 701, 756, 776, 861
AjuI	GAANNNNNNNTTGG	4 cut(s)	86, 118, 146, 178
AluBI	AGCT	6 cut(s)	118, 232, 323, 680, 707, 767
AluI	AGCT	6 cut(s)	118, 232, 323, 680, 707, 767
Alw21I	GWGCWC	1 cut(s)	465
AlwI	GGATC	1 cut(s)	443
AlwNI	CAGNNNCTG	2 cut(s)	38, 118
AoxI	GGCC	3 cut(s)	3, 252, 875
ApeKI	GCWGC	3 cut(s)	32, 398, 509
ApoI	RAATTY	3 cut(s)	101, 438, 776
AspA2I	CCTAGG	1 cut(s)	605
AspLEI	GCGC	1 cut(s)	330
AsuHPI	GGTGA	5 cut(s)	38, 124, 171, 458, 725
AvrII	CCTAGG	1 cut(s)	605
BbrPI	CACGTG	1 cut(s)	881
Bbv12I	GWGCWC	1 cut(s)	465
BbvI	GCAGC	3 cut(s)	44, 385, 521
BccI	CCATC	2 cut(s)	584, 851
BclI	TGATCA	1 cut(s)	370
BfaI	CTAG	2 cut(s)	536, 606
BfmI	CTRYAG	1 cut(s)	814
BglI	GCCNNNNNGGC	1 cut(s)	29
BisI	GCNGC	5 cut(s)	6, 33, 399, 510, 875
BlnI	CCTAGG	1 cut(s)	605
BlpI	GCTNAGC	1 cut(s)	324
BlsI	GCNGC	5 cut(s)	7, 34, 400, 511, 876
BmsI	GCATC	1 cut(s)	522
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
Bpu1102I	GCTNAGC	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	660
Bsa29I	ATCGAT	1 cut(s)	660
BsaAI	YACGTR	1 cut(s)	881
BsaBI	GATNNNNATC	1 cut(s)	369
BsaJI	CCNNGG	3 cut(s)	6, 520, 605
BsaXI	ACNNNNNCTCC	2 cut(s)	732, 762
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 553
Bse118I	RCCGGY	1 cut(s)	23
Bse1I	ACTGG	1 cut(s)	869
Bse3DI	GCAATG	1 cut(s)	789
Bse8I	GATNNNNATC	1 cut(s)	369
BseCI	ATCGAT	1 cut(s)	660
BseDI	CCNNGG	3 cut(s)	6, 520, 605
BseGI	GGATG	1 cut(s)	576
BseJI	GATNNNNATC	1 cut(s)	369
BseLI	CCNNNNNNNGG	2 cut(s)	55, 553
BseMI	GCAATG	1 cut(s)	789
BseMII	CTCAG	2 cut(s)	6, 315
BseNI	ACTGG	1 cut(s)	869
BseXI	GCAGC	3 cut(s)	44, 385, 521
BsgI	GTGCAG	1 cut(s)	131
Bsh1236I	CGCG	2 cut(s)	8, 330
BshFI	GGCC	3 cut(s)	5, 254, 877
BshVI	ATCGAT	1 cut(s)	660
BsiHKAI	GWGCWC	1 cut(s)	465
BsiSI	CCGG	1 cut(s)	24
BslFI	GGGAC	1 cut(s)	541
BslI	CCNNNNNNNGG	2 cut(s)	55, 553
BsmFI	GGGAC	1 cut(s)	541
BsmI	GAATGC	2 cut(s)	454, 751
BsnI	GGCC	3 cut(s)	5, 254, 877
Bsp1286I	GDGCHC	1 cut(s)	465
Bsp1407I	TGTACA	1 cut(s)	650
Bsp143I	GATC	3 cut(s)	370, 448, 742
Bsp1720I	GCTNAGC	1 cut(s)	324
BspACI	CCGC	5 cut(s)	6, 8, 452, 819, 874
BspANI	GGCC	3 cut(s)	5, 254, 877
BspCNI	CTCAG	2 cut(s)	7, 316
BspDI	ATCGAT	1 cut(s)	660
BspFNI	CGCG	2 cut(s)	8, 330
BspPI	GGATC	1 cut(s)	443
BspQI	GCTCTTC	1 cut(s)	381
BsrDI	GCAATG	1 cut(s)	789
BsrFI	RCCGGY	1 cut(s)	23
BsrGI	TGTACA	1 cut(s)	650
BsrI	ACTGG	1 cut(s)	869
BssAI	RCCGGY	1 cut(s)	23
BssECI	CCNNGG	3 cut(s)	6, 520, 605
BssMI	GATC	3 cut(s)	370, 448, 742
BssNAI	GTATAC	1 cut(s)	646
BssT1I	CCWWGG	2 cut(s)	520, 605
Bst1107I	GTATAC	1 cut(s)	646
Bst4CI	ACNGT	4 cut(s)	352, 643, 650, 815
Bst6I	CTCTTC	2 cut(s)	287, 381
BstAPI	GCANNNNNTGC	3 cut(s)	38, 460, 794
BstAUI	TGTACA	1 cut(s)	650
BstBAI	YACGTR	1 cut(s)	881
BstDEI	CTNAG	2 cut(s)	15, 324
BstDSI	CCRYGG	1 cut(s)	6
BstF5I	GGATG	1 cut(s)	576
BstFNI	CGCG	2 cut(s)	8, 330
BstHHI	GCGC	1 cut(s)	330
BstKTI	GATC	3 cut(s)	373, 451, 745
BstMBI	GATC	3 cut(s)	370, 448, 742
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 20, 29, 38, 320, 460, 509, 794, 803
BstSFI	CTRYAG	1 cut(s)	814
BstUI	CGCG	2 cut(s)	8, 330
BstV1I	GCAGC	3 cut(s)	44, 385, 521
BstZ17I	GTATAC	1 cut(s)	646
Bsu15I	ATCGAT	1 cut(s)	660
BsuRI	GGCC	3 cut(s)	5, 254, 877
BsuTUI	ATCGAT	1 cut(s)	660
BtgI	CCRYGG	1 cut(s)	6
BtsCI	GGATG	1 cut(s)	576
BtsIMutI	CAGTG	4 cut(s)	240, 465, 806, 876
CaiI	CAGNNNCTG	2 cut(s)	38, 118
CfoI	GCGC	1 cut(s)	330
Cfr10I	RCCGGY	1 cut(s)	23
Cfr42I	CCGCGG	1 cut(s)	9
ClaI	ATCGAT	1 cut(s)	660
CseI	GACGC	1 cut(s)	380
Csp6I	GTAC	1 cut(s)	651
CviAII	CATG	2 cut(s)	497, 746
CviQI	GTAC	1 cut(s)	651
DdeI	CTNAG	2 cut(s)	15, 324
DpnI	GATC	3 cut(s)	372, 450, 744
DpnII	GATC	3 cut(s)	370, 448, 742
EaeI	YGGCCR	2 cut(s)	3, 875
Eam1104I	CTCTTC	2 cut(s)	287, 381
EarI	CTCTTC	2 cut(s)	287, 381
Eco130I	CCWWGG	2 cut(s)	520, 605
Eco57I	CTGAAG	2 cut(s)	301, 702
Eco72I	CACGTG	1 cut(s)	881
EcoRI	GAATTC	1 cut(s)	101
EcoT14I	CCWWGG	2 cut(s)	520, 605
ErhI	CCWWGG	2 cut(s)	520, 605
FaeI	CATG	2 cut(s)	500, 749
FaiI	YATR	9 cut(s)	128, 282, 357, 404, 498, 646, 747, 764, 800
FalI	AAGNNNNNCTT	4 cut(s)	378, 410, 680, 712
FaqI	GGGAC	1 cut(s)	541
FatI	CATG	2 cut(s)	496, 745
FbaI	TGATCA	1 cut(s)	370
FblI	GTMKAC	1 cut(s)	645
Fnu4HI	GCNGC	5 cut(s)	6, 33, 399, 510, 875
FokI	GGATG	1 cut(s)	563
Fsp4HI	GCNGC	5 cut(s)	6, 33, 399, 510, 875
FspBI	CTAG	2 cut(s)	536, 606
GlaI	GCGC	1 cut(s)	329
GluI	GCNGC	5 cut(s)	6, 33, 399, 510, 875
HaeIII	GGCC	3 cut(s)	5, 254, 877
HapII	CCGG	1 cut(s)	24
HgaI	GACGC	1 cut(s)	380
HhaI	GCGC	1 cut(s)	330
Hin1II	CATG	2 cut(s)	500, 749
Hin6I	GCGC	1 cut(s)	328
HinP1I	GCGC	1 cut(s)	328
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HinfI	GANTC	3 cut(s)	59, 83, 589
HpaII	CCGG	1 cut(s)	24
HphI	GGTGA	5 cut(s)	38, 124, 171, 458, 725
Hpy166II	GTNNAC	4 cut(s)	132, 419, 430, 646
Hpy188I	TCNGA	5 cut(s)	82, 100, 320, 364, 613
Hpy188III	TCNNGA	1 cut(s)	688
Hpy8I	GTNNAC	4 cut(s)	132, 419, 430, 646
HpyAV	CCTTC	8 cut(s)	177, 258, 291, 325, 573, 590, 661, 867
HpyCH4III	ACNGT	4 cut(s)	352, 643, 650, 815
HpyCH4IV	ACGT	2 cut(s)	880, 896
HpyCH4V	TGCA	7 cut(s)	112, 187, 473, 751, 782, 806, 901
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 20, 29, 38, 320, 460, 509, 794, 803
HpyF3I	CTNAG	2 cut(s)	15, 324
HpySE526I	ACGT	2 cut(s)	880, 896
Hsp92II	CATG	2 cut(s)	500, 749
HspAI	GCGC	1 cut(s)	328
Ksp22I	TGATCA	1 cut(s)	370
KspI	CCGCGG	1 cut(s)	9
Kzo9I	GATC	3 cut(s)	370, 448, 742
LguI	GCTCTTC	1 cut(s)	381
LmnI	GCTCC	1 cut(s)	468
LpnPI	CCDG	9 cut(s)	37, 62, 104, 236, 272, 597, 622, 832, 882
Lsp1109I	GCAGC	3 cut(s)	44, 385, 521
LweI	GCATC	1 cut(s)	522
MaeI	CTAG	2 cut(s)	536, 606
MaeII	ACGT	2 cut(s)	880, 896
MaeIII	GTNAC	3 cut(s)	379, 718, 883
MalI	GATC	3 cut(s)	372, 450, 744
MboI	GATC	3 cut(s)	370, 448, 742
MboII	GAAGA	5 cut(s)	154, 282, 304, 398, 626
MhlI	GDGCHC	1 cut(s)	465
MluCI	AATT	5 cut(s)	101, 196, 412, 438, 776
MnlI	CCTC	6 cut(s)	22, 46, 192, 611, 709, 723
MseI	TTAA	1 cut(s)	904
MspA1I	CMGCKG	1 cut(s)	8
MspI	CCGG	1 cut(s)	24
Mva1269I	GAATGC	2 cut(s)	454, 751
MvnI	CGCG	2 cut(s)	8, 330
MwoI	GCNNNNNNNGC	9 cut(s)	11, 20, 29, 38, 320, 460, 509, 794, 803
NdeII	GATC	3 cut(s)	370, 448, 742
NlaIII	CATG	2 cut(s)	500, 749
NmuCI	GTSAC	1 cut(s)	883
PciSI	GCTCTTC	1 cut(s)	381
PcsI	WCGNNNNNNNCGW	1 cut(s)	886
PctI	GAATGC	2 cut(s)	454, 751
PfeI	GAWTC	3 cut(s)	59, 83, 589
PflMI	CCANNNNNTGG	1 cut(s)	55
PkrI	GCNGC	5 cut(s)	7, 34, 400, 511, 876
PmaCI	CACGTG	1 cut(s)	881
PmlI	CACGTG	1 cut(s)	881
Ppu21I	YACGTR	1 cut(s)	881
Psp1406I	AACGTT	1 cut(s)	896
PspCI	CACGTG	1 cut(s)	881
PstNI	CAGNNNCTG	2 cut(s)	38, 118
RsaI	GTAC	1 cut(s)	652
RsaNI	GTAC	1 cut(s)	651
SacII	CCGCGG	1 cut(s)	9
SapI	GCTCTTC	1 cut(s)	381
SaqAI	TTAA	1 cut(s)	904
SatI	GCNGC	5 cut(s)	6, 33, 399, 510, 875
Sau3AI	GATC	3 cut(s)	370, 448, 742
SduI	GDGCHC	1 cut(s)	465
SfaNI	GCATC	1 cut(s)	522
SfcI	CTRYAG	1 cut(s)	814
Sfr303I	CCGCGG	1 cut(s)	9
SgrBI	CCGCGG	1 cut(s)	9
SmlI	CTYRAG	1 cut(s)	675
SmoI	CTYRAG	1 cut(s)	675
Sse9I	AATT	5 cut(s)	101, 196, 412, 438, 776
SsiI	CCGC	5 cut(s)	6, 8, 452, 819, 874
SspMI	CTAG	2 cut(s)	536, 606
StyI	CCWWGG	2 cut(s)	520, 605
TaaI	ACNGT	4 cut(s)	352, 643, 650, 815
TaiI	ACGT	2 cut(s)	883, 899
TaqI	TCGA	4 cut(s)	86, 105, 262, 660
TasI	AATT	5 cut(s)	101, 196, 412, 438, 776
TatI	WGTACW	1 cut(s)	650
TauI	GCSGC	2 cut(s)	8, 877
TfiI	GAWTC	3 cut(s)	59, 83, 589
Tru1I	TTAA	1 cut(s)	904
Tru9I	TTAA	1 cut(s)	904
TscAI	CASTG	4 cut(s)	247, 465, 813, 876
TseFI	GTSAC	1 cut(s)	883
TseI	GCWGC	3 cut(s)	32, 398, 509
Tsp45I	GTSAC	1 cut(s)	883
TspDTI	ATGAA	2 cut(s)	159, 633
TspGWI	ACGGA	1 cut(s)	455
TspRI	CASTG	4 cut(s)	247, 465, 813, 876
Van91I	CCANNNNNTGG	1 cut(s)	55
XapI	RAATTY	3 cut(s)	101, 438, 776
XmaJI	CCTAGG	1 cut(s)	605
XmiI	GTMKAC	1 cut(s)	645
XspI	CTAG	2 cut(s)	536, 606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.