Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0013752

Physical Location & Seq

Genomic Coordinates Reverse (-)

21195143 .. 21195792

Gene Structure 650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00182210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGTTGTGCCGCAATGGAAGGCTTCGGCGCGGCGGCTTGTTGCTGCGGGCGGCGTTTTGGTGGCGATAGGGCTTGCGGCGGTGTGTGTGGTTGTGCGGTGTTTGGCCTTTGCGGGGGATGGGGGTCTTGGGCCGGCCACCGTTCTCGGTCCTCTTTGTGCCATCTCTATGGCTCGGTCCGTTGGCCGTGCTGTTGTTTATCAATGTGATGATGAATTACCCTTGCACATGGTCCGGCGGTTTTGGGACACGGTGCTTGAAAGGGTGTTACGATTCATCTTCATATTGGTGGCAGGGTTGTATCTTTACACTAGAGTTCGGCTGCTACCCATGGTAGCCCGCATGTATGGGCGAATTTGGTGGTTGGAGATTGGGCTTGTTTGGCTCACCGAGGTCGGTCTTGTTGGCAGATCCGCCACTATGGTTCTAGTCTGGAAGGGGTGTTGTGGTTTGATACCACATATGGTTACTCCTGGTCTTTGTAATATGTTTGATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

166

Amino Acids

18.25

Weight (kDa)

9.33

Isoelectric Point (pI)

34.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013752)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0363721 RchiOBHm_Chr2g0173981 RchiOBHm_Chr4g0394391
rosa_multiflora	Rmu_sc0001644.1_g000025 Rmu_sc0003301.1_g000014 Rmu_sc0005592.1_g000022 Rmu_sc0009451.1_g000005 Rmu_sc0033532.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433970 Rroxscaffold_1G00043050 Rroxscaffold_4G00311030 Rroxscaffold_5G00368050 Rroxscaffold_6G00395850 Rroxscaffold_6G00404020 Rroxscaffold_7G00182210
rosa_rugosa	Rorug05G0195200
rosa_samantha	Rh4DG298400
rosa_wichuraiana	Rw4G008430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	31
AclWI	GGATC	1 cut(s)	405
AcoI	YGGCCR	2 cut(s)	135, 184
AcsI	RAATTY	1 cut(s)	354
AfiI	CCNNNNNNNGG	1 cut(s)	114
AgsI	TTSAA	1 cut(s)	260
AjnI	CCWGG	1 cut(s)	472
AlwI	GGATC	1 cut(s)	405
AoxI	GGCC	4 cut(s)	105, 131, 135, 184
ApeKI	GCWGC	2 cut(s)	44, 322
ApoI	RAATTY	1 cut(s)	354
AspLEI	GCGC	1 cut(s)	31
AspS9I	GGNCC	4 cut(s)	131, 149, 177, 232
AsuHPI	GGTGA	1 cut(s)	379
AvaII	GGWCC	3 cut(s)	149, 177, 232
BbvI	GCAGC	2 cut(s)	31, 309
BccI	CCATC	2 cut(s)	113, 170
BceAI	ACGGC	1 cut(s)	171
BciT130I	CCWGG	1 cut(s)	474
BfaI	CTAG	2 cut(s)	312, 428
BisI	GCNGC	7 cut(s)	11, 32, 35, 45, 52, 78, 323
BlsI	GCNGC	7 cut(s)	12, 33, 36, 46, 53, 79, 324
Bme1390I	CCNGG	1 cut(s)	474
Bme18I	GGWCC	3 cut(s)	149, 177, 232
BmgT120I	GGNCC	4 cut(s)	131, 149, 177, 232
BmrFI	CCNGG	1 cut(s)	474
BsaJI	CCNNGG	2 cut(s)	330, 390
Bsc4I	CCNNNNNNNGG	1 cut(s)	114
Bse118I	RCCGGY	1 cut(s)	133
Bse3DI	GCAATG	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	474
BseDI	CCNNGG	2 cut(s)	330, 390
BseGI	GGATG	1 cut(s)	124
BseLI	CCNNNNNNNGG	1 cut(s)	114
BseMI	GCAATG	1 cut(s)	20
BseXI	GCAGC	2 cut(s)	31, 309
Bsh1236I	CGCG	1 cut(s)	31
BshFI	GGCC	4 cut(s)	107, 133, 137, 186
BsiSI	CCGG	2 cut(s)	134, 235
BslFI	GGGAC	1 cut(s)	260
BslI	CCNNNNNNNGG	1 cut(s)	114
BsmFI	GGGAC	1 cut(s)	260
BsnI	GGCC	4 cut(s)	107, 133, 137, 186
Bsp143I	GATC	1 cut(s)	410
Bsp19I	CCATGG	1 cut(s)	330
BspANI	GGCC	4 cut(s)	107, 133, 137, 186
BspFNI	CGCG	1 cut(s)	31
BspPI	GGATC	1 cut(s)	405
BsrDI	GCAATG	1 cut(s)	20
BsrFI	RCCGGY	1 cut(s)	133
BssAI	RCCGGY	1 cut(s)	133
BssECI	CCNNGG	2 cut(s)	330, 390
BssMI	GATC	1 cut(s)	410
BssT1I	CCWWGG	1 cut(s)	330
Bst2UI	CCWGG	1 cut(s)	474
Bst4CI	ACNGT	2 cut(s)	142, 253
BstC8I	GCNNGC	4 cut(s)	49, 75, 135, 340
BstDSI	CCRYGG	1 cut(s)	330
BstF5I	GGATG	1 cut(s)	124
BstFNI	CGCG	1 cut(s)	31
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	1 cut(s)	413
BstMBI	GATC	1 cut(s)	410
BstMWI	GCNNNNNNNGC	1 cut(s)	382
BstNI	CCWGG	1 cut(s)	474
BstNSI	RCATGY	1 cut(s)	346
BstSCI	CCNGG	1 cut(s)	472
BstUI	CGCG	1 cut(s)	31
BstV1I	GCAGC	2 cut(s)	31, 309
BstX2I	RGATCY	1 cut(s)	410
BstXI	CCANNNNNNTGG	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	410
BsuRI	GGCC	4 cut(s)	107, 133, 137, 186
BtgI	CCRYGG	1 cut(s)	330
BtsCI	GGATG	1 cut(s)	124
Cac8I	GCNNGC	4 cut(s)	49, 75, 135, 340
CfoI	GCGC	1 cut(s)	31
Cfr10I	RCCGGY	1 cut(s)	133
Cfr13I	GGNCC	4 cut(s)	131, 149, 177, 232
CpoI	CGGWCCG	1 cut(s)	177
CspI	CGGWCCG	1 cut(s)	177
CviAII	CATG	3 cut(s)	229, 331, 343
DpnI	GATC	1 cut(s)	412
DpnII	GATC	1 cut(s)	410
EaeI	YGGCCR	2 cut(s)	135, 184
EciI	GGCGGA	1 cut(s)	403
Eco130I	CCWWGG	1 cut(s)	330
Eco47I	GGWCC	3 cut(s)	149, 177, 232
EcoRII	CCWGG	1 cut(s)	472
EcoT14I	CCWWGG	1 cut(s)	330
ErhI	CCWWGG	1 cut(s)	330
FaeI	CATG	3 cut(s)	232, 334, 346
FaqI	GGGAC	1 cut(s)	260
FatI	CATG	3 cut(s)	228, 330, 342
FauI	CCCGC	3 cut(s)	40, 106, 347
FauNDI	CATATG	1 cut(s)	462
Fnu4HI	GCNGC	7 cut(s)	11, 32, 35, 45, 52, 78, 323
FokI	GGATG	1 cut(s)	131
FseI	GGCCGGCC	1 cut(s)	137
Fsp4HI	GCNGC	7 cut(s)	11, 32, 35, 45, 52, 78, 323
FspBI	CTAG	2 cut(s)	312, 428
GlaI	GCGC	1 cut(s)	30
GluI	GCNGC	7 cut(s)	11, 32, 35, 45, 52, 78, 323
HaeIII	GGCC	4 cut(s)	107, 133, 137, 186
HapII	CCGG	2 cut(s)	134, 235
HhaI	GCGC	1 cut(s)	31
Hin1II	CATG	3 cut(s)	232, 334, 346
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HinfI	GANTC	1 cut(s)	273
HpaII	CCGG	2 cut(s)	134, 235
HphI	GGTGA	1 cut(s)	379
Hpy188III	TCNNGA	1 cut(s)	433
HpyAV	CCTTC	2 cut(s)	13, 430
HpyCH4III	ACNGT	2 cut(s)	142, 253
HpyCH4V	TGCA	1 cut(s)	226
HpyF10VI	GCNNNNNNNGC	1 cut(s)	382
Hsp92II	CATG	3 cut(s)	232, 334, 346
HspAI	GCGC	1 cut(s)	29
KroI	GCCGGC	1 cut(s)	133
KroNI	GCCGGC	1 cut(s)	135
Kzo9I	GATC	1 cut(s)	410
LpnPI	CCDG	6 cut(s)	147, 248, 279, 418, 459, 486
Lsp1109I	GCAGC	2 cut(s)	31, 309
MaeI	CTAG	2 cut(s)	312, 428
MaeIII	GTNAC	2 cut(s)	267, 466
MalI	GATC	1 cut(s)	412
MboI	GATC	1 cut(s)	410
MboII	GAAGA	1 cut(s)	271
MflI	RGATCY	1 cut(s)	410
MluCI	AATT	2 cut(s)	215, 354
MmeI	TCCRAC	1 cut(s)	345
MnlI	CCTC	2 cut(s)	162, 385
MroNI	GCCGGC	1 cut(s)	133
MseI	TTAA	1 cut(s)	499
MslI	CAYNNNNRTG	2 cut(s)	167, 287
MspI	CCGG	2 cut(s)	134, 235
MspR9I	CCNGG	1 cut(s)	474
MvaI	CCWGG	1 cut(s)	474
MvnI	CGCG	1 cut(s)	31
MwoI	GCNNNNNNNGC	1 cut(s)	382
NaeI	GCCGGC	1 cut(s)	135
NcoI	CCATGG	1 cut(s)	330
NdeI	CATATG	1 cut(s)	462
NdeII	GATC	1 cut(s)	410
NgoMIV	GCCGGC	1 cut(s)	133
NlaIII	CATG	3 cut(s)	232, 334, 346
NspI	RCATGY	1 cut(s)	346
PdiI	GCCGGC	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	273
PkrI	GCNGC	7 cut(s)	12, 33, 36, 46, 53, 79, 324
Psp6I	CCWGG	1 cut(s)	472
PspGI	CCWGG	1 cut(s)	472
PspPI	GGNCC	4 cut(s)	131, 149, 177, 232
PsuI	RGATCY	1 cut(s)	410
RigI	GGCCGGCC	1 cut(s)	137
RseI	CAYNNNNRTG	2 cut(s)	167, 287
Rsr2I	CGGWCCG	1 cut(s)	177
RsrII	CGGWCCG	1 cut(s)	177
SaqAI	TTAA	1 cut(s)	499
SatI	GCNGC	7 cut(s)	11, 32, 35, 45, 52, 78, 323
Sau3AI	GATC	1 cut(s)	410
Sau96I	GGNCC	4 cut(s)	131, 149, 177, 232
ScrFI	CCNGG	1 cut(s)	474
SetI	ASST	1 cut(s)	396
SinI	GGWCC	3 cut(s)	149, 177, 232
SmiMI	CAYNNNNRTG	2 cut(s)	167, 287
Sse9I	AATT	2 cut(s)	215, 354
SspMI	CTAG	2 cut(s)	312, 428
StyD4I	CCNGG	1 cut(s)	472
StyI	CCWWGG	1 cut(s)	330
TaaI	ACNGT	2 cut(s)	142, 253
TaqII	GACCGA	3 cut(s)	137, 165, 386
TasI	AATT	2 cut(s)	215, 354
TauI	GCSGC	5 cut(s)	13, 34, 37, 54, 80
TfiI	GAWTC	1 cut(s)	273
Tru1I	TTAA	1 cut(s)	499
Tru9I	TTAA	1 cut(s)	499
TseI	GCWGC	2 cut(s)	44, 322
TspDTI	ATGAA	3 cut(s)	228, 265, 271
TspGWI	ACGGA	1 cut(s)	169
VpaK11BI	GGWCC	3 cut(s)	149, 177, 232
XapI	RAATTY	1 cut(s)	354
XceI	RCATGY	1 cut(s)	346
XspI	CTAG	2 cut(s)	312, 428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.