Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0013752

Physical Location & Seq

Genomic Coordinates Reverse (-)

18484223 .. 18485419

Gene Structure 1197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G008430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGACGACCGCCACGGATCCTCCGCCGCCTCCGCCACCGCCTCCACTCTCCGCAGACCCCGCTGACTCCGAAACCCTAGACAATGTGCCGATGGAGACCACCTCCCATTCTTCAACCCAAATAAAGCCTCCGATGGGGCCTCCACCTCCCAAAAACCCTAGTCCACCTCCTCCTCCTCCCCAAAACCGAAACCCCACTCCACCCTCTACATCCACCACCGACTCCGAGACCTCCAAGCACCAATCCCAAGGCTTTACCGTCCCTTATTCGATTCCTGAATGGAGTGGAGCTCCATGCCACCAGTTCCAGCTCGAGGTCCTCAAGGACAGCGCCATTGTCGACCAATTCAATGTGTATGAAAAAGGGCCTTACATGTTCGGCCGGGTCGATTGTTCTGGAGCACCCTACTATTTCTCTGTTTCATGCAGTCGACAGTGGATACCTGTTAATTTTCTTATTCACTTCAAGAGAAGTGGAGATGCGTACATCTATGACCTTGGCAGTACTCATGGTACTTTTGTTAACAAGAACCAGGTATTGTGGTTTTTGTTAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

185

Amino Acids

20.34

Weight (kDa)

5.4

Isoelectric Point (pI)

55.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013752)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0363721 RchiOBHm_Chr2g0173981 RchiOBHm_Chr4g0394391
rosa_multiflora	Rmu_sc0001644.1_g000025 Rmu_sc0003301.1_g000014 Rmu_sc0005592.1_g000022 Rmu_sc0009451.1_g000005 Rmu_sc0033532.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433970 Rroxscaffold_1G00043050 Rroxscaffold_4G00311030 Rroxscaffold_5G00368050 Rroxscaffold_6G00395850 Rroxscaffold_6G00404020 Rroxscaffold_7G00182210
rosa_rugosa	Rorug05G0195200
rosa_samantha	Rh4DG298400
rosa_wichuraiana	Rw4G008430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	339, 430
AciI	CCGC	7 cut(s)	9, 23, 26, 32, 38, 51, 60
AclWI	GGATC	2 cut(s)	11, 24
AcoI	YGGCCR	1 cut(s)	379
AfaI	GTAC	3 cut(s)	485, 505, 514
AfiI	CCNNNNNNNGG	2 cut(s)	134, 313
AflIII	ACRYGT	1 cut(s)	372
AgsI	TTSAA	3 cut(s)	114, 349, 466
AjnI	CCWGG	1 cut(s)	531
AluBI	AGCT	2 cut(s)	290, 310
AluI	AGCT	2 cut(s)	290, 310
Alw21I	GWGCWC	2 cut(s)	292, 403
Alw26I	GTCTC	2 cut(s)	89, 221
AlwI	GGATC	2 cut(s)	11, 24
Ama87I	CYCGRG	1 cut(s)	311
AoxI	GGCC	3 cut(s)	137, 365, 379
AspLEI	GCGC	1 cut(s)	332
AspS9I	GGNCC	3 cut(s)	137, 316, 365
AsuC2I	CCSGG	1 cut(s)	383
AvaI	CYCGRG	1 cut(s)	311
AvaII	GGWCC	1 cut(s)	316
BaeI	ACNNNNGTAYC	2 cut(s)	504, 537
BamHI	GGATCC	1 cut(s)	16
BanII	GRGCYC	1 cut(s)	292
Bbv12I	GWGCWC	2 cut(s)	292, 403
BccI	CCATC	2 cut(s)	85, 127
BciT130I	CCWGG	1 cut(s)	533
BciVI	GTATCC	1 cut(s)	432
BcnI	CCSGG	1 cut(s)	383
BcoDI	GTCTC	2 cut(s)	89, 221
BfaI	CTAG	3 cut(s)	77, 159, 556
BfoI	RGCGCY	1 cut(s)	333
BfuI	GTATCC	1 cut(s)	432
BisI	GCNGC	1 cut(s)	26
BlsI	GCNGC	1 cut(s)	27
BmcAI	AGTACT	1 cut(s)	505
Bme1390I	CCNGG	2 cut(s)	383, 533
Bme18I	GGWCC	1 cut(s)	316
BmeT110I	CYCGRG	1 cut(s)	311
BmgT120I	GGNCC	3 cut(s)	137, 316, 365
BmiI	GGNNCC	2 cut(s)	18, 138
BmrFI	CCNGG	2 cut(s)	383, 533
BmsI	GCATC	1 cut(s)	469
BplI	GAGNNNNNCTC	4 cut(s)	86, 118, 274, 306
BpmI	CTGGAG	1 cut(s)	417
BpuEI	CTTGAG	1 cut(s)	305
BpuMI	CCSGG	1 cut(s)	383
BsaI	GGTCTC	2 cut(s)	89, 221
BsaJI	CCNNGG	3 cut(s)	12, 247, 496
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	2 cut(s)	134, 313
Bse1I	ACTGG	1 cut(s)	301
BseBI	CCWGG	1 cut(s)	533
BseDI	CCNNGG	3 cut(s)	12, 247, 496
BseGI	GGATG	1 cut(s)	209
BseLI	CCNNNNNNNGG	2 cut(s)	134, 313
BseNI	ACTGG	1 cut(s)	301
BseRI	GAGGAG	3 cut(s)	159, 162, 165
BseX3I	CGGCCG	1 cut(s)	379
Bsh1285I	CGRYCG	2 cut(s)	9, 382
BshFI	GGCC	3 cut(s)	139, 367, 381
BsiEI	CGRYCG	2 cut(s)	9, 382
BsiHKAI	GWGCWC	2 cut(s)	292, 403
BsiHKCI	CYCGRG	1 cut(s)	311
BsiSI	CCGG	1 cut(s)	382
BslFI	GGGAC	1 cut(s)	245
BslI	CCNNNNNNNGG	2 cut(s)	134, 313
BsmAI	GTCTC	2 cut(s)	89, 221
BsmFI	GGGAC	1 cut(s)	245
BsnI	GGCC	3 cut(s)	139, 367, 381
Bso31I	GGTCTC	2 cut(s)	89, 221
BsoBI	CYCGRG	1 cut(s)	311
Bsp1286I	GDGCHC	2 cut(s)	292, 403
Bsp143I	GATC	1 cut(s)	16
BspACI	CCGC	7 cut(s)	9, 23, 26, 32, 38, 51, 60
BspANI	GGCC	3 cut(s)	139, 367, 381
BspLI	GGNNCC	2 cut(s)	18, 138
BspPI	GGATC	2 cut(s)	11, 24
BspTNI	GGTCTC	2 cut(s)	89, 221
BsrI	ACTGG	1 cut(s)	301
BssECI	CCNNGG	3 cut(s)	12, 247, 496
BssMI	GATC	1 cut(s)	16
BssT1I	CCWWGG	2 cut(s)	247, 496
Bst2UI	CCWGG	1 cut(s)	533
Bst4CI	ACNGT	2 cut(s)	259, 435
BstDSI	CCRYGG	1 cut(s)	12
BstF5I	GGATG	1 cut(s)	209
BstH2I	RGCGCY	1 cut(s)	333
BstHHI	GCGC	1 cut(s)	332
BstKTI	GATC	1 cut(s)	19
BstMAI	GTCTC	2 cut(s)	89, 221
BstMBI	GATC	1 cut(s)	16
BstMCI	CGRYCG	2 cut(s)	9, 382
BstMWI	GCNNNNNNNGC	2 cut(s)	31, 59
BstNI	CCWGG	1 cut(s)	533
BstNSI	RCATGY	1 cut(s)	376
BstSCI	CCNGG	2 cut(s)	381, 531
BstX2I	RGATCY	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	16
BstZI	CGGCCG	1 cut(s)	379
BsuI	GTATCC	1 cut(s)	432
BsuRI	GGCC	3 cut(s)	139, 367, 381
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	1 cut(s)	209
BtsIMutI	CAGTG	1 cut(s)	440
CfoI	GCGC	1 cut(s)	332
Cfr13I	GGNCC	3 cut(s)	137, 316, 365
CsiI	ACCWGGT	1 cut(s)	531
Csp6I	GTAC	3 cut(s)	484, 504, 513
CspCI	CAANNNNNGTGG	2 cut(s)	454, 489
CviAII	CATG	4 cut(s)	294, 373, 423, 509
CviJI	RGCY	7 cut(s)	127, 139, 252, 290, 310, 367, 381
CviKI_1	RGCY	7 cut(s)	127, 139, 252, 290, 310, 367, 381
CviQI	GTAC	3 cut(s)	484, 504, 513
DpnI	GATC	1 cut(s)	18
DpnII	GATC	1 cut(s)	16
EaeI	YGGCCR	1 cut(s)	379
EagI	CGGCCG	1 cut(s)	379
EciI	GGCGGA	2 cut(s)	12, 21
Ecl136II	GAGCTC	1 cut(s)	290
EclXI	CGGCCG	1 cut(s)	379
Eco130I	CCWWGG	2 cut(s)	247, 496
Eco24I	GRGCYC	1 cut(s)	292
Eco31I	GGTCTC	2 cut(s)	89, 221
Eco47I	GGWCC	1 cut(s)	316
Eco52I	CGGCCG	1 cut(s)	379
Eco53kI	GAGCTC	1 cut(s)	290
Eco88I	CYCGRG	1 cut(s)	311
EcoICRI	GAGCTC	1 cut(s)	290
EcoO109I	RGGNCCY	3 cut(s)	137, 316, 365
EcoRII	CCWGG	1 cut(s)	531
EcoT14I	CCWWGG	2 cut(s)	247, 496
EcoT38I	GRGCYC	1 cut(s)	292
ErhI	CCWWGG	2 cut(s)	247, 496
FaeI	CATG	4 cut(s)	297, 376, 426, 512
FaiI	YATR	6 cut(s)	295, 357, 374, 424, 492, 510
FaqI	GGGAC	1 cut(s)	245
FatI	CATG	4 cut(s)	293, 372, 422, 508
FauI	CCCGC	1 cut(s)	67
FblI	GTMKAC	2 cut(s)	339, 430
Fnu4HI	GCNGC	1 cut(s)	26
FokI	GGATG	1 cut(s)	196
FriOI	GRGCYC	1 cut(s)	292
Fsp4HI	GCNGC	1 cut(s)	26
FspBI	CTAG	3 cut(s)	77, 159, 556
GlaI	GCGC	1 cut(s)	331
GluI	GCNGC	1 cut(s)	26
GsuI	CTGGAG	1 cut(s)	417
HaeII	RGCGCY	1 cut(s)	333
HaeIII	GGCC	3 cut(s)	139, 367, 381
HapII	CCGG	1 cut(s)	382
HhaI	GCGC	1 cut(s)	332
Hin1II	CATG	4 cut(s)	297, 376, 426, 512
Hin6I	GCGC	1 cut(s)	330
HinP1I	GCGC	1 cut(s)	330
HincII	GTYRAC	3 cut(s)	340, 431, 523
HindII	GTYRAC	3 cut(s)	340, 431, 523
HinfI	GANTC	3 cut(s)	65, 221, 271
HpaI	GTTAAC	1 cut(s)	523
HpaII	CCGG	1 cut(s)	382
Hpy166II	GTNNAC	4 cut(s)	164, 340, 431, 523
Hpy188I	TCNGA	3 cut(s)	70, 132, 226
Hpy188III	TCNNGA	3 cut(s)	275, 396, 466
Hpy8I	GTNNAC	4 cut(s)	164, 340, 431, 523
HpyCH4III	ACNGT	2 cut(s)	259, 435
HpyCH4V	TGCA	1 cut(s)	426
HpyF10VI	GCNNNNNNNGC	2 cut(s)	31, 59
Hsp92II	CATG	4 cut(s)	297, 376, 426, 512
HspAI	GCGC	1 cut(s)	330
KspAI	GTTAAC	1 cut(s)	523
Kzo9I	GATC	1 cut(s)	16
LmnI	GCTCC	3 cut(s)	287, 295, 398
LpnPI	CCDG	8 cut(s)	288, 314, 320, 381, 395, 456, 518, 545
LweI	GCATC	1 cut(s)	469
MabI	ACCWGGT	1 cut(s)	531
MaeI	CTAG	3 cut(s)	77, 159, 556
MalI	GATC	1 cut(s)	18
MboI	GATC	1 cut(s)	16
MboII	GAAGA	1 cut(s)	102
MflI	RGATCY	1 cut(s)	16
MhlI	GDGCHC	2 cut(s)	292, 403
MluCI	AATT	2 cut(s)	344, 448
MlyI	GAGTC	2 cut(s)	59, 215
MseI	TTAA	2 cut(s)	447, 522
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	1 cut(s)	382
MspR9I	CCNGG	2 cut(s)	383, 533
MvaI	CCWGG	1 cut(s)	533
MwoI	GCNNNNNNNGC	2 cut(s)	31, 59
NciI	CCSGG	1 cut(s)	383
NdeII	GATC	1 cut(s)	16
NlaIII	CATG	4 cut(s)	297, 376, 426, 512
NlaIV	GGNNCC	2 cut(s)	18, 138
NspI	RCATGY	1 cut(s)	376
PaeR7I	CTCGAG	1 cut(s)	311
PciI	ACATGT	1 cut(s)	372
PcsI	WCGNNNNNNNCGW	1 cut(s)	384
PfeI	GAWTC	1 cut(s)	271
PkrI	GCNGC	1 cut(s)	27
PleI	GAGTC	2 cut(s)	59, 215
PpsI	GAGTC	2 cut(s)	59, 215
PpuMI	RGGWCCY	1 cut(s)	316
PscI	ACATGT	1 cut(s)	372
Psp124BI	GAGCTC	1 cut(s)	292
Psp5II	RGGWCCY	1 cut(s)	316
Psp6I	CCWGG	1 cut(s)	531
PspGI	CCWGG	1 cut(s)	531
PspN4I	GGNNCC	2 cut(s)	18, 138
PspPI	GGNCC	3 cut(s)	137, 316, 365
PspPPI	RGGWCCY	1 cut(s)	316
PspXI	VCTCGAGB	1 cut(s)	311
PsuI	RGATCY	1 cut(s)	16
RsaI	GTAC	3 cut(s)	485, 505, 514
RsaNI	GTAC	3 cut(s)	484, 504, 513
SacI	GAGCTC	1 cut(s)	292
SalI	GTCGAC	2 cut(s)	338, 429
SaqAI	TTAA	2 cut(s)	447, 522
SatI	GCNGC	1 cut(s)	26
Sau3AI	GATC	1 cut(s)	16
Sau96I	GGNCC	3 cut(s)	137, 316, 365
ScaI	AGTACT	1 cut(s)	505
SchI	GAGTC	2 cut(s)	59, 215
ScrFI	CCNGG	2 cut(s)	383, 533
SduI	GDGCHC	2 cut(s)	292, 403
SexAI	ACCWGGT	1 cut(s)	531
SfaNI	GCATC	1 cut(s)	469
Sfr274I	CTCGAG	1 cut(s)	311
SinI	GGWCC	1 cut(s)	316
SlaI	CTCGAG	1 cut(s)	311
SmlI	CTYRAG	2 cut(s)	311, 320
SmoI	CTYRAG	2 cut(s)	311, 320
Sse9I	AATT	2 cut(s)	344, 448
SsiI	CCGC	7 cut(s)	9, 23, 26, 32, 38, 51, 60
SspMI	CTAG	3 cut(s)	77, 159, 556
SstI	GAGCTC	1 cut(s)	292
StyD4I	CCNGG	2 cut(s)	381, 531
StyI	CCWWGG	2 cut(s)	247, 496
TaaI	ACNGT	2 cut(s)	259, 435
TaqI	TCGA	5 cut(s)	269, 312, 339, 387, 430
TasI	AATT	2 cut(s)	344, 448
TatI	WGTACW	1 cut(s)	503
TauI	GCSGC	1 cut(s)	28
TfiI	GAWTC	1 cut(s)	271
Tru1I	TTAA	2 cut(s)	447, 522
Tru9I	TTAA	2 cut(s)	447, 522
TscAI	CASTG	1 cut(s)	440
TspDTI	ATGAA	2 cut(s)	372, 411
TspGWI	ACGGA	1 cut(s)	29
TspRI	CASTG	1 cut(s)	440
VpaK11BI	GGWCC	1 cut(s)	316
XceI	RCATGY	1 cut(s)	376
XhoI	CTCGAG	1 cut(s)	311
XmiI	GTMKAC	2 cut(s)	339, 430
XspI	CTAG	3 cut(s)	77, 159, 556
ZrmI	AGTACT	1 cut(s)	505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.