Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005441

Physical Location & Seq

Genomic Coordinates Reverse (-)

66065883 .. 66068032

Gene Structure 2150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60365

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGTATATAGTGACATGTATACATCTGTATCAAGGAGCATTTGTGGACACCGGAGGTGTATATGATATGCTATGTGGGGTTCCGATAAAAAATATTGACTGGTACTGGATCCGCCGTCACATAAAAGTTGGTATGCGTGTCATGGTTGAAATTCTGGCGAGTAGTGCTGCACTCCAATTTCTCTCTCTCTCTTTTGTTTTATTGACTCTGTATTCTCTTTCTTATGGGATGATGCATATTAAACGAGATCCTTATCGCTTTCGGTTTCCAATTGAACTGCGTTTTGTCTATCCTAATATAGACCACCTTATCTTTAACAGATTTGACTTTCCACCAATATTTCATCATGCTGAAGATACTAATCCAGATGAATTACAGCGTGATTGTGGAAGACCTCCTGTGCCCAGGAAAGATCCAAAAAATAAGCCCGTAGAGGAACCTTTATTGTCAAATCACCCTTATGTTGATAAGTTGTGGCAGATACTTGTTGCTGAACAGATGATTGTGGATGATGTGGAGGCTAATCCTGAAAAATATAAAGACAAAAAGCTATCAGAGTTAACTGATACTGAAGATTTGAATGAAGAAAACTGTTTTGAATATACGAAAGCCTATTATAAGAAAACCTTAGTACCAAAAGTGATTCTGGTGACCACTTGTCTTAAAACAAGCGTTAAAGAACTTGACCTGGAGGCTGCCTTTGCTGAGCGTCAGTTGGCCGAAGTTAAAAATGTTATCACCAGCAGCGGCGGATCCAGAAGTAAATGTCAGGTAAGGCAAGATTCAACTAAATTAGTACGATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0005829 GO:0009295 GO:0009507 GO:0009508 GO:0009532 GO:0009536 GO:0009570 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

268

Amino Acids

31.19

Weight (kDa)

6.66

Isoelectric Point (pI)

43.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48500 AT3G48500
fragaria_vesca	FvH4_5g07670 FvH4_5g07670 FvH4_5g07670
malus_domestica	MD14G1162400.v1.1
prunus_persica	Prupe.5G155500_v2.0.a1
pyrus_communis	pycom14g13530
rosa_chinensis	RchiOBHm_Chr1g0380381 RchiOBHm_Chr7g0190801
rosa_laevigata	RLG00000004495 RLG00000004556 RLG00000026308
rosa_multiflora	Rmu_sc0002819.1_g000003 Rmu_sc0003249.1_g000020
rosa_roxburghii	Rroxscaffold_3G00264290 Rroxscaffold_4G00279440
rosa_rugosa	Rorug04G0085500 Rorug06G0507200
rosa_samantha	Rh1CG414500 Rh4AG090600 Rh4BG147500 Rh4CG098900 Rh7AG113800 Rh7BG116400 Rh7CG119100 Rh7DG117700
rosa_wichuraiana	Rw1G038700 Rw7G009930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	618
AccI	GTMKAC	1 cut(s)	19
AciI	CCGC	3 cut(s)	112, 747, 750
AclWI	GGATC	6 cut(s)	103, 116, 242, 407, 747, 760
AcoI	YGGCCR	1 cut(s)	717
AcsI	RAATTY	1 cut(s)	150
AcuI	CTGAAG	2 cut(s)	372, 591
AfaI	GTAC	3 cut(s)	104, 633, 798
AflIII	ACRYGT	1 cut(s)	14
AgsI	TTSAA	5 cut(s)	149, 275, 580, 599, 786
AhdI	GACNNNNNGTC	1 cut(s)	657
AjnI	CCWGG	2 cut(s)	404, 687
AluBI	AGCT	1 cut(s)	550
AluI	AGCT	1 cut(s)	550
AlwI	GGATC	6 cut(s)	103, 116, 242, 407, 747, 760
AoxI	GGCC	1 cut(s)	717
ApeKI	GCWGC	3 cut(s)	167, 695, 744
ApoI	RAATTY	1 cut(s)	150
AsuHPI	GGTGA	3 cut(s)	446, 661, 730
BaeGI	GKGCMC	1 cut(s)	405
BaeI	ACNNNNGTAYC	4 cut(s)	11, 44, 615, 648
BamHI	GGATCC	2 cut(s)	108, 752
BbsI	GAAGAC	1 cut(s)	397
BbvI	GCAGC	3 cut(s)	154, 682, 756
BceAI	ACGGC	1 cut(s)	99
BciT130I	CCWGG	2 cut(s)	406, 689
BisI	GCNGC	4 cut(s)	168, 696, 745, 748
BlpI	GCTNAGC	1 cut(s)	705
BlsI	GCNGC	4 cut(s)	169, 697, 746, 749
Bme1390I	CCNGG	2 cut(s)	406, 689
BmeRI	GACNNNNNGTC	1 cut(s)	657
BmiI	GGNNCC	4 cut(s)	81, 110, 438, 754
BmrFI	CCNGG	2 cut(s)	406, 689
BmsI	GCATC	1 cut(s)	222
BpiI	GAAGAC	1 cut(s)	397
BpmI	CTGGAG	1 cut(s)	710
Bpu1102I	GCTNAGC	1 cut(s)	705
BsaBI	GATNNNNATC	2 cut(s)	252, 360
BsaJI	CCNNGG	1 cut(s)	404
BsaWI	WCCGGW	1 cut(s)	50
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bse1I	ACTGG	2 cut(s)	104, 110
Bse8I	GATNNNNATC	2 cut(s)	252, 360
BseBI	CCWGG	2 cut(s)	406, 689
BseDI	CCNNGG	1 cut(s)	404
BseGI	GGATG	2 cut(s)	234, 514
BseJI	GATNNNNATC	2 cut(s)	252, 360
BseMII	CTCAG	1 cut(s)	696
BseNI	ACTGG	2 cut(s)	104, 110
BseSI	GKGCMC	1 cut(s)	405
BseXI	GCAGC	3 cut(s)	154, 682, 756
BsgI	GTGCAG	1 cut(s)	153
BshFI	GGCC	1 cut(s)	719
BsiSI	CCGG	1 cut(s)	51
BsnI	GGCC	1 cut(s)	719
Bsp1286I	GDGCHC	1 cut(s)	405
Bsp143I	GATC	4 cut(s)	108, 247, 412, 752
Bsp1720I	GCTNAGC	1 cut(s)	705
BspACI	CCGC	3 cut(s)	112, 747, 750
BspANI	GGCC	1 cut(s)	719
BspCNI	CTCAG	1 cut(s)	697
BspLI	GGNNCC	4 cut(s)	81, 110, 438, 754
BspPI	GGATC	6 cut(s)	103, 116, 242, 407, 747, 760
BsrI	ACTGG	2 cut(s)	104, 110
BssECI	CCNNGG	1 cut(s)	404
BssMI	GATC	4 cut(s)	108, 247, 412, 752
BssNAI	GTATAC	1 cut(s)	20
Bst1107I	GTATAC	1 cut(s)	20
Bst2UI	CCWGG	2 cut(s)	406, 689
Bst4CI	ACNGT	1 cut(s)	593
BstDEI	CTNAG	2 cut(s)	628, 705
BstEII	GGTNACC	1 cut(s)	649
BstF5I	GGATG	2 cut(s)	234, 514
BstKTI	GATC	4 cut(s)	111, 250, 415, 755
BstMBI	GATC	4 cut(s)	108, 247, 412, 752
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 701
BstNI	CCWGG	2 cut(s)	406, 689
BstNSI	RCATGY	1 cut(s)	18
BstPI	GGTNACC	1 cut(s)	649
BstSCI	CCNGG	2 cut(s)	404, 687
BstSLI	GKGCMC	1 cut(s)	405
BstV1I	GCAGC	3 cut(s)	154, 682, 756
BstV2I	GAAGAC	1 cut(s)	397
BstX2I	RGATCY	4 cut(s)	108, 247, 412, 752
BstYI	RGATCY	4 cut(s)	108, 247, 412, 752
BstZ17I	GTATAC	1 cut(s)	20
BsuRI	GGCC	1 cut(s)	719
BtsCI	GGATG	2 cut(s)	234, 514
CseI	GACGC	1 cut(s)	698
Csp6I	GTAC	3 cut(s)	103, 632, 797
CviAII	CATG	3 cut(s)	15, 142, 347
CviJI	RGCY	6 cut(s)	427, 521, 550, 611, 695, 719
CviKI_1	RGCY	6 cut(s)	427, 521, 550, 611, 695, 719
CviQI	GTAC	3 cut(s)	103, 632, 797
DdeI	CTNAG	2 cut(s)	628, 705
DpnI	GATC	4 cut(s)	110, 249, 414, 754
DpnII	GATC	4 cut(s)	108, 247, 412, 752
DriI	GACNNNNNGTC	1 cut(s)	657
EaeI	YGGCCR	1 cut(s)	717
Eam1105I	GACNNNNNGTC	1 cut(s)	657
EciI	GGCGGA	2 cut(s)	101, 765
Eco57I	CTGAAG	2 cut(s)	372, 591
Eco91I	GGTNACC	1 cut(s)	649
EcoO65I	GGTNACC	1 cut(s)	649
EcoRII	CCWGG	2 cut(s)	404, 687
EcoT22I	ATGCAT	1 cut(s)	237
FaeI	CATG	3 cut(s)	18, 145, 350
FalI	AAGNNNNNCTT	2 cut(s)	611, 643
FatI	CATG	3 cut(s)	14, 141, 346
FblI	GTMKAC	1 cut(s)	19
Fnu4HI	GCNGC	4 cut(s)	168, 696, 745, 748
FokI	GGATG	2 cut(s)	241, 521
Fsp4HI	GCNGC	4 cut(s)	168, 696, 745, 748
GluI	GCNGC	4 cut(s)	168, 696, 745, 748
GsuI	CTGGAG	1 cut(s)	710
HaeIII	GGCC	1 cut(s)	719
HapII	CCGG	1 cut(s)	51
HgaI	GACGC	1 cut(s)	698
Hin1II	CATG	3 cut(s)	18, 145, 350
HincII	GTYRAC	1 cut(s)	561
HindII	GTYRAC	1 cut(s)	561
HinfI	GANTC	3 cut(s)	205, 643, 782
HpaI	GTTAAC	1 cut(s)	561
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	3 cut(s)	446, 661, 730
Hpy166II	GTNNAC	3 cut(s)	20, 46, 561
Hpy188I	TCNGA	2 cut(s)	84, 556
Hpy188III	TCNNGA	3 cut(s)	365, 527, 756
Hpy8I	GTNNAC	3 cut(s)	20, 46, 561
HpyCH4III	ACNGT	1 cut(s)	593
HpyCH4V	TGCA	2 cut(s)	170, 235
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 701
HpyF3I	CTNAG	2 cut(s)	628, 705
Hsp92II	CATG	3 cut(s)	18, 145, 350
KspAI	GTTAAC	1 cut(s)	561
Kzo9I	GATC	4 cut(s)	108, 247, 412, 752
LmnI	GCTCC	1 cut(s)	35
Lsp1109I	GCAGC	3 cut(s)	154, 682, 756
LweI	GCATC	1 cut(s)	222
MaeIII	GTNAC	3 cut(s)	10, 116, 649
MalI	GATC	4 cut(s)	110, 249, 414, 754
MboI	GATC	4 cut(s)	108, 247, 412, 752
MboII	GAAGA	4 cut(s)	365, 402, 584, 596
MfeI	CAATTG	1 cut(s)	270
MflI	RGATCY	4 cut(s)	108, 247, 412, 752
MhlI	GDGCHC	1 cut(s)	405
MluCI	AATT	5 cut(s)	150, 176, 270, 371, 791
MlyI	GAGTC	1 cut(s)	199
MnlI	CCTC	5 cut(s)	47, 405, 427, 511, 685
Mph1103I	ATGCAT	1 cut(s)	237
MseI	TTAA	7 cut(s)	240, 315, 560, 663, 675, 726, 805
MslI	CAYNNNNRTG	1 cut(s)	459
MspA1I	CMGCKG	1 cut(s)	747
MspI	CCGG	1 cut(s)	51
MspR9I	CCNGG	2 cut(s)	406, 689
MunI	CAATTG	1 cut(s)	270
MvaI	CCWGG	2 cut(s)	406, 689
MwoI	GCNNNNNNNGC	2 cut(s)	164, 701
NdeII	GATC	4 cut(s)	108, 247, 412, 752
NlaIII	CATG	3 cut(s)	18, 145, 350
NlaIV	GGNNCC	4 cut(s)	81, 110, 438, 754
NmuCI	GTSAC	3 cut(s)	10, 116, 649
NsiI	ATGCAT	1 cut(s)	237
NspI	RCATGY	1 cut(s)	18
PciI	ACATGT	1 cut(s)	14
PfeI	GAWTC	2 cut(s)	643, 782
PkrI	GCNGC	4 cut(s)	169, 697, 746, 749
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
PscI	ACATGT	1 cut(s)	14
PsiI	TTATAA	1 cut(s)	618
Psp6I	CCWGG	2 cut(s)	404, 687
PspEI	GGTNACC	1 cut(s)	649
PspGI	CCWGG	2 cut(s)	404, 687
PspN4I	GGNNCC	4 cut(s)	81, 110, 438, 754
PsuI	RGATCY	4 cut(s)	108, 247, 412, 752
RsaI	GTAC	3 cut(s)	104, 633, 798
RsaNI	GTAC	3 cut(s)	103, 632, 797
RseI	CAYNNNNRTG	1 cut(s)	459
SaqAI	TTAA	7 cut(s)	240, 315, 560, 663, 675, 726, 805
SatI	GCNGC	4 cut(s)	168, 696, 745, 748
Sau3AI	GATC	4 cut(s)	108, 247, 412, 752
SchI	GAGTC	1 cut(s)	199
ScrFI	CCNGG	2 cut(s)	406, 689
SduI	GDGCHC	1 cut(s)	405
SetI	ASST	8 cut(s)	58, 309, 397, 442, 552, 629, 690, 774
SfaNI	GCATC	1 cut(s)	222
SmiMI	CAYNNNNRTG	1 cut(s)	459
Sse9I	AATT	5 cut(s)	150, 176, 270, 371, 791
SsiI	CCGC	3 cut(s)	112, 747, 750
SspI	AATATT	2 cut(s)	94, 339
StyD4I	CCNGG	2 cut(s)	404, 687
TaaI	ACNGT	1 cut(s)	593
TasI	AATT	5 cut(s)	150, 176, 270, 371, 791
TauI	GCSGC	1 cut(s)	750
TfiI	GAWTC	2 cut(s)	643, 782
Tru1I	TTAA	7 cut(s)	240, 315, 560, 663, 675, 726, 805
Tru9I	TTAA	7 cut(s)	240, 315, 560, 663, 675, 726, 805
TseFI	GTSAC	3 cut(s)	10, 116, 649
TseI	GCWGC	3 cut(s)	167, 695, 744
Tsp45I	GTSAC	3 cut(s)	10, 116, 649
TspDTI	ATGAA	3 cut(s)	332, 384, 597
XapI	RAATTY	1 cut(s)	150
XceI	RCATGY	1 cut(s)	18
XmiI	GTMKAC	1 cut(s)	19
Zsp2I	ATGCAT	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.