Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005441

Physical Location & Seq

Genomic Coordinates Forward (+)

2039848 .. 2042826

Gene Structure 2979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026308

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGCAACCCCTCACCAATTCCTCTTCACCTAAAACCCTAAACCCTTCTCCCCACTCCAAGCCCCAACCCAAATGGACCCCTCCCCATCTCACCCATTCCCCTCCCACCAACCTCTTCAAACCCAAAGCCTTCAGCTCCGACAATACGGAATGCTTACTAAGTTGTATGGTTGAGAAAGCAACGGTAAAGGATGTGTCTTTGGTCGCAAGAGACAGAGTGGCTGATGTTACAGTGGGAATATGCGTAATGAAGATCTGTGAAGGAAAAGTGACATCTATACATCTGTATCAAGGAGCATTTGTGGACATCGGAAGTGCAAAACGAGATCCTTATCGCTTTCGGTTTCCAATTCAACTCTTTAACAGATTTGACTTTCCACCAATATTTCATCATGATGAAGATACTAATCCAGATGAATTACGGGTATGTGCTTCTCCCTCACTAATGCTAATCCTGAAAAAATATAAAGACAAAAAGCTATCAGAGTTAACTGAGACTGAAGATTTGAATGAAGAAAACTGTATTGAATATACAAAAGCCTATTATAAGAAAACCTTAGTACCAAAACTGATTCTGAAAACAAGTGTTAAAGAACTTGACCTGGAGCCTGCCTTTGCTAAGCGTCAGAAGGAAAAAGAAGAGAGAGGAGAGGAATACATAGTTACCAAAATGAGGCGCAATATTGAGATGGACGAGTATGACTTCTTACATTACCGTAAAGCTCTTGATCTACCACTGGAAGAGCCAGGGAGGTATGTGGAAGACAGCTATTTTGGGAAGGATCAATATGACCCAGACAATGCTCTATACCGATATGACTACTGGGGAGAACCAAAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0005829 GO:0009295 GO:0009507 GO:0009508 GO:0009532 GO:0009536 GO:0009570 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

281

Amino Acids

32.6

Weight (kDa)

6.21

Isoelectric Point (pI)

46.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48500 AT3G48500
fragaria_vesca	FvH4_5g07670 FvH4_5g07670 FvH4_5g07670
malus_domestica	MD14G1162400.v1.1
prunus_persica	Prupe.5G155500_v2.0.a1
pyrus_communis	pycom14g13530
rosa_chinensis	RchiOBHm_Chr1g0380381 RchiOBHm_Chr7g0190801
rosa_laevigata	RLG00000004495 RLG00000004556 RLG00000026308
rosa_multiflora	Rmu_sc0002819.1_g000003 Rmu_sc0003249.1_g000020
rosa_roxburghii	Rroxscaffold_3G00264290 Rroxscaffold_4G00279440
rosa_rugosa	Rorug04G0085500 Rorug06G0507200
rosa_samantha	Rh1CG414500 Rh4AG090600 Rh4BG147500 Rh4CG098900 Rh7AG113800 Rh7BG116400 Rh7CG119100 Rh7DG117700
rosa_wichuraiana	Rw1G038700 Rw7G009930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	546
AclWI	GGATC	2 cut(s)	320, 789
AcuI	CTGAAG	2 cut(s)	115, 519
AfaI	GTAC	1 cut(s)	561
AfiI	CCNNNNNNNGG	1 cut(s)	672
AgsI	TTSAA	4 cut(s)	118, 353, 508, 527
AjnI	CCWGG	2 cut(s)	600, 745
AluBI	AGCT	4 cut(s)	135, 478, 722, 768
AluI	AGCT	4 cut(s)	135, 478, 722, 768
Alw26I	GTCTC	2 cut(s)	204, 488
AlwI	GGATC	2 cut(s)	320, 789
ArsI	GACNNNNNNTTYG	4 cut(s)	487, 519, 755, 787
AspLEI	GCGC	1 cut(s)	678
AspS9I	GGNCC	1 cut(s)	75
AsuHPI	GGTGA	3 cut(s)	4, 18, 82
AvaII	GGWCC	1 cut(s)	75
BaeI	ACNNNNGTAYC	4 cut(s)	269, 302, 543, 576
BbsI	GAAGAC	1 cut(s)	768
BccI	CCATC	2 cut(s)	93, 682
BciT130I	CCWGG	2 cut(s)	602, 747
BcoDI	GTCTC	2 cut(s)	204, 488
BglII	AGATCT	1 cut(s)	252
BlpI	GCTNAGC	1 cut(s)	618
Bme1390I	CCNGG	2 cut(s)	602, 747
Bme18I	GGWCC	1 cut(s)	75
BmgT120I	GGNCC	1 cut(s)	75
BmiI	GGNNCC	2 cut(s)	77, 606
BmrFI	CCNGG	2 cut(s)	602, 747
BmrI	ACTGGG	1 cut(s)	832
BmuI	ACTGGG	1 cut(s)	832
BpiI	GAAGAC	1 cut(s)	768
BpmI	CTGGAG	1 cut(s)	623
Bpu1102I	GCTNAGC	1 cut(s)	618
BsaBI	GATNNNNATC	2 cut(s)	330, 405
BsaJI	CCNNGG	1 cut(s)	746
BsaXI	ACNNNNNCTCC	2 cut(s)	285, 315
Bsc4I	CCNNNNNNNGG	1 cut(s)	672
Bse1I	ACTGG	2 cut(s)	741, 827
Bse8I	GATNNNNATC	2 cut(s)	330, 405
BseBI	CCWGG	2 cut(s)	602, 747
BseDI	CCNNGG	1 cut(s)	746
BseGI	GGATG	1 cut(s)	196
BseJI	GATNNNNATC	2 cut(s)	330, 405
BseLI	CCNNNNNNNGG	1 cut(s)	672
BseMII	CTCAG	1 cut(s)	483
BseNI	ACTGG	2 cut(s)	741, 827
BseRI	GAGGAG	1 cut(s)	660
BslI	CCNNNNNNNGG	1 cut(s)	672
BsmAI	GTCTC	2 cut(s)	204, 488
BsmI	GAATGC	1 cut(s)	155
Bsp143I	GATC	4 cut(s)	252, 325, 727, 781
Bsp1720I	GCTNAGC	1 cut(s)	618
BspCNI	CTCAG	1 cut(s)	484
BspHI	TCATGA	1 cut(s)	391
BspLI	GGNNCC	2 cut(s)	77, 606
BspPI	GGATC	2 cut(s)	320, 789
BspQI	GCTCTTC	1 cut(s)	735
BsrI	ACTGG	2 cut(s)	741, 827
BssECI	CCNNGG	1 cut(s)	746
BssMI	GATC	4 cut(s)	252, 325, 727, 781
Bst2UI	CCWGG	2 cut(s)	602, 747
Bst4CI	ACNGT	4 cut(s)	184, 232, 521, 716
Bst6I	CTCTTC	4 cut(s)	28, 119, 633, 735
BstC8I	GCNNGC	1 cut(s)	609
BstDEI	CTNAG	4 cut(s)	158, 492, 556, 618
BstF5I	GGATG	1 cut(s)	196
BstHHI	GCGC	1 cut(s)	678
BstKTI	GATC	4 cut(s)	255, 328, 730, 784
BstMAI	GTCTC	2 cut(s)	204, 488
BstMBI	GATC	4 cut(s)	252, 325, 727, 781
BstNI	CCWGG	2 cut(s)	602, 747
BstSCI	CCNGG	2 cut(s)	600, 745
BstV2I	GAAGAC	1 cut(s)	768
BstX2I	RGATCY	2 cut(s)	252, 325
BstYI	RGATCY	2 cut(s)	252, 325
BtsCI	GGATG	1 cut(s)	196
BtsIMutI	CAGTG	2 cut(s)	237, 734
Cac8I	GCNNGC	1 cut(s)	609
CciI	TCATGA	1 cut(s)	391
CfoI	GCGC	1 cut(s)	678
Cfr13I	GGNCC	1 cut(s)	75
CseI	GACGC	1 cut(s)	611
Csp6I	GTAC	1 cut(s)	560
CviAII	CATG	1 cut(s)	392
CviQI	GTAC	1 cut(s)	560
DdeI	CTNAG	4 cut(s)	158, 492, 556, 618
DpnI	GATC	4 cut(s)	254, 327, 729, 783
DpnII	GATC	4 cut(s)	252, 325, 727, 781
Eam1104I	CTCTTC	4 cut(s)	28, 119, 633, 735
EarI	CTCTTC	4 cut(s)	28, 119, 633, 735
Eco47I	GGWCC	1 cut(s)	75
Eco57I	CTGAAG	2 cut(s)	115, 519
EcoRII	CCWGG	2 cut(s)	600, 745
FaeI	CATG	1 cut(s)	395
FalI	AAGNNNNNCTT	2 cut(s)	539, 571
FatI	CATG	1 cut(s)	391
FokI	GGATG	1 cut(s)	203
GlaI	GCGC	1 cut(s)	677
GsuI	CTGGAG	1 cut(s)	623
HgaI	GACGC	1 cut(s)	611
HhaI	GCGC	1 cut(s)	678
Hin1II	CATG	1 cut(s)	395
Hin6I	GCGC	1 cut(s)	676
HinP1I	GCGC	1 cut(s)	676
HincII	GTYRAC	1 cut(s)	489
HindII	GTYRAC	1 cut(s)	489
HinfI	GANTC	1 cut(s)	571
HpaI	GTTAAC	1 cut(s)	489
HphI	GGTGA	3 cut(s)	4, 18, 82
Hpy166II	GTNNAC	2 cut(s)	304, 489
Hpy188I	TCNGA	5 cut(s)	139, 311, 484, 576, 627
Hpy188III	TCNNGA	4 cut(s)	392, 410, 454, 725
Hpy8I	GTNNAC	2 cut(s)	304, 489
HpyAV	CCTTC	5 cut(s)	54, 139, 254, 622, 772
HpyCH4III	ACNGT	4 cut(s)	184, 232, 521, 716
HpyCH4V	TGCA	2 cut(s)	4, 317
HpyF3I	CTNAG	4 cut(s)	158, 492, 556, 618
Hsp92II	CATG	1 cut(s)	395
HspAI	GCGC	1 cut(s)	676
KspAI	GTTAAC	1 cut(s)	489
Kzo9I	GATC	4 cut(s)	252, 325, 727, 781
LguI	GCTCTTC	1 cut(s)	735
LmnI	GCTCC	3 cut(s)	140, 293, 604
MaeIII	GTNAC	3 cut(s)	226, 268, 661
MalI	GATC	4 cut(s)	254, 327, 729, 783
MboI	GATC	4 cut(s)	252, 325, 727, 781
MboII	GAAGA	9 cut(s)	15, 106, 262, 410, 512, 524, 650, 752, 773
MflI	RGATCY	2 cut(s)	252, 325
MluCI	AATT	3 cut(s)	16, 348, 416
MmeI	TCCRAC	1 cut(s)	162
MseI	TTAA	3 cut(s)	360, 488, 588
MslI	CAYNNNNRTG	1 cut(s)	393
MspR9I	CCNGG	2 cut(s)	602, 747
Mva1269I	GAATGC	1 cut(s)	155
MvaI	CCWGG	2 cut(s)	602, 747
NdeII	GATC	4 cut(s)	252, 325, 727, 781
NlaIII	CATG	1 cut(s)	395
NlaIV	GGNNCC	2 cut(s)	77, 606
NmuCI	GTSAC	1 cut(s)	268
PagI	TCATGA	1 cut(s)	391
PciSI	GCTCTTC	1 cut(s)	735
PctI	GAATGC	1 cut(s)	155
PfeI	GAWTC	1 cut(s)	571
PsiI	TTATAA	1 cut(s)	546
Psp6I	CCWGG	2 cut(s)	600, 745
PspGI	CCWGG	2 cut(s)	600, 745
PspN4I	GGNNCC	2 cut(s)	77, 606
PspPI	GGNCC	1 cut(s)	75
PsuI	RGATCY	2 cut(s)	252, 325
RsaI	GTAC	1 cut(s)	561
RsaNI	GTAC	1 cut(s)	560
RseI	CAYNNNNRTG	1 cut(s)	393
SapI	GCTCTTC	1 cut(s)	735
SaqAI	TTAA	3 cut(s)	360, 488, 588
Sau3AI	GATC	4 cut(s)	252, 325, 727, 781
Sau96I	GGNCC	1 cut(s)	75
ScrFI	CCNGG	2 cut(s)	602, 747
SetI	ASST	9 cut(s)	31, 114, 137, 480, 557, 603, 724, 755, 770
SinI	GGWCC	1 cut(s)	75
SmiMI	CAYNNNNRTG	1 cut(s)	393
Sse9I	AATT	3 cut(s)	16, 348, 416
SspI	AATATT	2 cut(s)	384, 682
StyD4I	CCNGG	2 cut(s)	600, 745
TaaI	ACNGT	4 cut(s)	184, 232, 521, 716
TasI	AATT	3 cut(s)	16, 348, 416
TfiI	GAWTC	1 cut(s)	571
Tru1I	TTAA	3 cut(s)	360, 488, 588
Tru9I	TTAA	3 cut(s)	360, 488, 588
TscAI	CASTG	2 cut(s)	237, 741
TseFI	GTSAC	1 cut(s)	268
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	5 cut(s)	263, 377, 411, 429, 525
TspGWI	ACGGA	1 cut(s)	161
TspRI	CASTG	2 cut(s)	237, 741
VpaK11BI	GGWCC	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.