Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0005441

Physical Location & Seq

Genomic Coordinates Reverse (-)

17964259 .. 17968500

Gene Structure 4242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG098900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGCCCTGTTTCATTTCTCAGCGTGATTGTGGAAGACCTCCTGTGCCCAGGAAGGATCCAAAAGATACGCCCGTAGAGGAACCTTTATTGTCAAATCACCCTTATGTTGATAAGTTGTGGCAGATACATGTTGCTGAACAGATGATTTTGGATGATGTGGAGGCTAATCCTGGGAAATATAAAGACAAAAAACTATCAGAGTTAACTGATACCGAAGATTTGAATGAAGAAAATAGTATTGAATATTCAAAAGCTTATTATAAGAAAACCTTAGTACCAAAAGTGATTCTGAAAACAAGCGTTAAAGAACTAGACCTGGAGGCTGCCTTTGCTGAGCGTCAGCTACGTAACGCACTAAGAAGGGAGACAGAAGAGAGAGGAGAGGAATACAAAGTTACCAAAATGAGGCGCAATGTTGAGATGGACGAGTATGACTTCTTACATTGGCATCGATCATTGGAGGAAAGAGAAGCTTTGATCAGAGATATAAGCTGTTACACACTGAACCTGCATGCTAAAACTGTAAGGTTTTTCCTACAGCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0005829 GO:0009295 GO:0009507 GO:0009508 GO:0009532 GO:0009536 GO:0009570 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

181

Amino Acids

21.48

Weight (kDa)

5.65

Isoelectric Point (pI)

54.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48500 AT3G48500
fragaria_vesca	FvH4_5g07670 FvH4_5g07670 FvH4_5g07670
malus_domestica	MD14G1162400.v1.1
prunus_persica	Prupe.5G155500_v2.0.a1
pyrus_communis	pycom14g13530
rosa_chinensis	RchiOBHm_Chr1g0380381 RchiOBHm_Chr7g0190801
rosa_laevigata	RLG00000004495 RLG00000004556 RLG00000026308
rosa_multiflora	Rmu_sc0002819.1_g000003 Rmu_sc0003249.1_g000020
rosa_roxburghii	Rroxscaffold_3G00264290 Rroxscaffold_4G00279440
rosa_rugosa	Rorug04G0085500 Rorug06G0507200
rosa_samantha	Rh1CG414500 Rh4AG090600 Rh4BG147500 Rh4CG098900 Rh7AG113800 Rh7BG116400 Rh7CG119100 Rh7DG117700
rosa_wichuraiana	Rw1G038700 Rw7G009930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	261
Acc36I	ACCTGC	1 cut(s)	516
AclWI	GGATC	2 cut(s)	50, 63
AfaI	GTAC	1 cut(s)	276
AfiI	CCNNNNNNNGG	1 cut(s)	405
AflIII	ACRYGT	1 cut(s)	127
AgsI	TTSAA	3 cut(s)	223, 242, 249
AjnI	CCWGG	3 cut(s)	47, 169, 315
AluBI	AGCT	4 cut(s)	254, 343, 473, 492
AluI	AGCT	4 cut(s)	254, 343, 473, 492
Alw26I	GTCTC	1 cut(s)	359
AlwI	GGATC	2 cut(s)	50, 63
ApeKI	GCWGC	1 cut(s)	323
AspLEI	GCGC	1 cut(s)	411
AsuHPI	GGTGA	1 cut(s)	89
BaeGI	GKGCMC	1 cut(s)	48
BaeI	ACNNNNGTAYC	4 cut(s)	57, 90, 258, 291
BamHI	GGATCC	1 cut(s)	55
BbsI	GAAGAC	1 cut(s)	40
BbvI	GCAGC	1 cut(s)	310
BccI	CCATC	1 cut(s)	415
BceAI	ACGGC	1 cut(s)	526
BciT130I	CCWGG	3 cut(s)	49, 171, 317
BclI	TGATCA	1 cut(s)	477
BcoDI	GTCTC	1 cut(s)	359
BfaI	CTAG	1 cut(s)	311
BfmI	CTRYAG	1 cut(s)	536
BfuAI	ACCTGC	1 cut(s)	516
BisI	GCNGC	1 cut(s)	324
BlpI	GCTNAGC	1 cut(s)	333
BlsI	GCNGC	1 cut(s)	325
Bme1390I	CCNGG	3 cut(s)	49, 171, 317
BmiI	GGNNCC	2 cut(s)	57, 81
BmrFI	CCNGG	3 cut(s)	49, 171, 317
BmsI	GCATC	1 cut(s)	457
BpiI	GAAGAC	1 cut(s)	40
BpmI	CTGGAG	1 cut(s)	338
Bpu1102I	GCTNAGC	1 cut(s)	333
Bsa29I	ATCGAT	1 cut(s)	451
BsaAI	YACGTR	1 cut(s)	347
BsaJI	CCNNGG	2 cut(s)	47, 170
Bsc4I	CCNNNNNNNGG	1 cut(s)	405
Bse3DI	GCAATG	1 cut(s)	418
BseBI	CCWGG	3 cut(s)	49, 171, 317
BseCI	ATCGAT	1 cut(s)	451
BseDI	CCNNGG	2 cut(s)	47, 170
BseGI	GGATG	1 cut(s)	157
BseLI	CCNNNNNNNGG	1 cut(s)	405
BseMI	GCAATG	1 cut(s)	418
BseMII	CTCAG	2 cut(s)	32, 324
BseRI	GAGGAG	1 cut(s)	393
BseSI	GKGCMC	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	310
BshVI	ATCGAT	1 cut(s)	451
BslI	CCNNNNNNNGG	1 cut(s)	405
BsmAI	GTCTC	1 cut(s)	359
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	3 cut(s)	55, 452, 477
Bsp1720I	GCTNAGC	1 cut(s)	333
BspCNI	CTCAG	2 cut(s)	31, 325
BspDI	ATCGAT	1 cut(s)	451
BspLI	GGNNCC	2 cut(s)	57, 81
BspMI	ACCTGC	1 cut(s)	516
BspPI	GGATC	2 cut(s)	50, 63
BsrDI	GCAATG	1 cut(s)	418
BssECI	CCNNGG	2 cut(s)	47, 170
BssMI	GATC	3 cut(s)	55, 452, 477
Bst2UI	CCWGG	3 cut(s)	49, 171, 317
Bst4CI	ACNGT	1 cut(s)	523
Bst6I	CTCTTC	1 cut(s)	366
BstBAI	YACGTR	1 cut(s)	347
BstC8I	GCNNGC	1 cut(s)	513
BstDEI	CTNAG	4 cut(s)	18, 271, 333, 356
BstF5I	GGATG	1 cut(s)	157
BstHHI	GCGC	1 cut(s)	411
BstKTI	GATC	3 cut(s)	58, 455, 480
BstMAI	GTCTC	1 cut(s)	359
BstMBI	GATC	3 cut(s)	55, 452, 477
BstMWI	GCNNNNNNNGC	1 cut(s)	329
BstNI	CCWGG	3 cut(s)	49, 171, 317
BstNSI	RCATGY	2 cut(s)	131, 515
BstSCI	CCNGG	3 cut(s)	47, 169, 315
BstSFI	CTRYAG	1 cut(s)	536
BstSLI	GKGCMC	1 cut(s)	48
BstSNI	TACGTA	1 cut(s)	347
BstV1I	GCAGC	1 cut(s)	310
BstV2I	GAAGAC	1 cut(s)	40
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
Bsu15I	ATCGAT	1 cut(s)	451
BsuTUI	ATCGAT	1 cut(s)	451
BtsCI	GGATG	1 cut(s)	157
BtsIMutI	CAGTG	1 cut(s)	500
BveI	ACCTGC	1 cut(s)	516
Cac8I	GCNNGC	1 cut(s)	513
CfoI	GCGC	1 cut(s)	411
ClaI	ATCGAT	1 cut(s)	451
CseI	GACGC	1 cut(s)	326
Csp6I	GTAC	1 cut(s)	275
CviAII	CATG	2 cut(s)	128, 512
CviJI	RGCY	7 cut(s)	164, 254, 323, 343, 473, 492, 541
CviKI_1	RGCY	7 cut(s)	164, 254, 323, 343, 473, 492, 541
CviQI	GTAC	1 cut(s)	275
DdeI	CTNAG	4 cut(s)	18, 271, 333, 356
DpnI	GATC	3 cut(s)	57, 454, 479
DpnII	GATC	3 cut(s)	55, 452, 477
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
Eco105I	TACGTA	1 cut(s)	347
EcoRII	CCWGG	3 cut(s)	47, 169, 315
FaeI	CATG	2 cut(s)	131, 515
FaiI	YATR	7 cut(s)	105, 129, 180, 261, 432, 488, 513
FalI	AAGNNNNNCTT	4 cut(s)	254, 286, 457, 489
FatI	CATG	2 cut(s)	127, 511
FbaI	TGATCA	1 cut(s)	477
Fnu4HI	GCNGC	1 cut(s)	324
FokI	GGATG	1 cut(s)	164
Fsp4HI	GCNGC	1 cut(s)	324
FspBI	CTAG	1 cut(s)	311
GlaI	GCGC	1 cut(s)	410
GluI	GCNGC	1 cut(s)	324
GsuI	CTGGAG	1 cut(s)	338
HgaI	GACGC	1 cut(s)	326
HhaI	GCGC	1 cut(s)	411
Hin1II	CATG	2 cut(s)	131, 515
Hin6I	GCGC	1 cut(s)	409
HinP1I	GCGC	1 cut(s)	409
HincII	GTYRAC	1 cut(s)	204
HindII	GTYRAC	1 cut(s)	204
HindIII	AAGCTT	2 cut(s)	252, 471
HinfI	GANTC	1 cut(s)	286
HpaI	GTTAAC	1 cut(s)	204
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	1 cut(s)	204
Hpy188I	TCNGA	3 cut(s)	199, 291, 482
Hpy8I	GTNNAC	1 cut(s)	204
HpyAV	CCTTC	2 cut(s)	46, 354
HpyCH4III	ACNGT	1 cut(s)	523
HpyCH4IV	ACGT	1 cut(s)	346
HpyCH4V	TGCA	1 cut(s)	511
HpyF10VI	GCNNNNNNNGC	1 cut(s)	329
HpyF3I	CTNAG	4 cut(s)	18, 271, 333, 356
HpySE526I	ACGT	1 cut(s)	346
Hsp92II	CATG	2 cut(s)	131, 515
HspAI	GCGC	1 cut(s)	409
Ksp22I	TGATCA	1 cut(s)	477
KspAI	GTTAAC	1 cut(s)	204
Kzo9I	GATC	3 cut(s)	55, 452, 477
LpnPI	CCDG	9 cut(s)	19, 34, 54, 61, 156, 183, 302, 329, 521
Lsp1109I	GCAGC	1 cut(s)	310
LweI	GCATC	1 cut(s)	457
MaeI	CTAG	1 cut(s)	311
MaeII	ACGT	1 cut(s)	346
MaeIII	GTNAC	3 cut(s)	347, 394, 494
MalI	GATC	3 cut(s)	57, 454, 479
MboI	GATC	3 cut(s)	55, 452, 477
MboII	GAAGA	4 cut(s)	45, 227, 239, 383
MflI	RGATCY	1 cut(s)	55
MhlI	GDGCHC	1 cut(s)	48
MnlI	CCTC	8 cut(s)	48, 70, 154, 313, 371, 376, 399, 454
MseI	TTAA	2 cut(s)	203, 303
MslI	CAYNNNNRTG	1 cut(s)	102
MspR9I	CCNGG	3 cut(s)	49, 171, 317
MvaI	CCWGG	3 cut(s)	49, 171, 317
MwoI	GCNNNNNNNGC	1 cut(s)	329
NdeII	GATC	3 cut(s)	55, 452, 477
NlaIII	CATG	2 cut(s)	131, 515
NlaIV	GGNNCC	2 cut(s)	57, 81
NspI	RCATGY	2 cut(s)	131, 515
PaeI	GCATGC	1 cut(s)	515
PciI	ACATGT	1 cut(s)	127
PfeI	GAWTC	1 cut(s)	286
PkrI	GCNGC	1 cut(s)	325
Ppu21I	YACGTR	1 cut(s)	347
PscI	ACATGT	1 cut(s)	127
PsiI	TTATAA	1 cut(s)	261
Psp6I	CCWGG	3 cut(s)	47, 169, 315
PspGI	CCWGG	3 cut(s)	47, 169, 315
PspN4I	GGNNCC	2 cut(s)	57, 81
PsuI	RGATCY	1 cut(s)	55
RsaI	GTAC	1 cut(s)	276
RsaNI	GTAC	1 cut(s)	275
RseI	CAYNNNNRTG	1 cut(s)	102
SaqAI	TTAA	2 cut(s)	203, 303
SatI	GCNGC	1 cut(s)	324
Sau3AI	GATC	3 cut(s)	55, 452, 477
ScrFI	CCNGG	3 cut(s)	49, 171, 317
SduI	GDGCHC	1 cut(s)	48
SfaNI	GCATC	1 cut(s)	457
SfcI	CTRYAG	1 cut(s)	536
SmiMI	CAYNNNNRTG	1 cut(s)	102
SnaBI	TACGTA	1 cut(s)	347
SphI	GCATGC	1 cut(s)	515
SspI	AATATT	1 cut(s)	245
SspMI	CTAG	1 cut(s)	311
StyD4I	CCNGG	3 cut(s)	47, 169, 315
TaaI	ACNGT	1 cut(s)	523
TaiI	ACGT	1 cut(s)	349
TaqI	TCGA	1 cut(s)	451
TfiI	GAWTC	1 cut(s)	286
Tru1I	TTAA	2 cut(s)	203, 303
Tru9I	TTAA	2 cut(s)	203, 303
TscAI	CASTG	1 cut(s)	507
TseI	GCWGC	1 cut(s)	323
TspDTI	ATGAA	1 cut(s)	240
TspRI	CASTG	1 cut(s)	507
XceI	RCATGY	2 cut(s)	131, 515
XspI	CTAG	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.