Ribosomal protein S1-like RNA-binding domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G48500 AT3G48500 |
| fragaria_vesca | FvH4_5g07670 FvH4_5g07670 FvH4_5g07670 |
| malus_domestica | MD14G1162400.v1.1 |
| prunus_persica | Prupe.5G155500_v2.0.a1 |
| pyrus_communis | pycom14g13530 |
| rosa_chinensis | RchiOBHm_Chr1g0380381 RchiOBHm_Chr7g0190801 |
| rosa_laevigata | RLG00000004495 RLG00000004556 RLG00000026308 |
| rosa_multiflora | Rmu_sc0002819.1_g000003 Rmu_sc0003249.1_g000020 |
| rosa_roxburghii | Rroxscaffold_3G00264290 Rroxscaffold_4G00279440 |
| rosa_rugosa | Rorug04G0085500 Rorug06G0507200 |
| rosa_samantha | Rh1CG414500 Rh4AG090600 Rh4BG147500 Rh4CG098900 Rh7AG113800 Rh7BG116400 Rh7CG119100 Rh7DG117700 |
| rosa_wichuraiana | Rw1G038700 Rw7G009930 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 261 |
| AclWI | GGATC | 2 cut(s) | 50, 63 |
| AfaI | GTAC | 1 cut(s) | 276 |
| AflIII | ACRYGT | 1 cut(s) | 127 |
| AgsI | TTSAA | 3 cut(s) | 223, 242, 249 |
| AjnI | CCWGG | 2 cut(s) | 47, 169 |
| AluBI | AGCT | 1 cut(s) | 254 |
| AluI | AGCT | 1 cut(s) | 254 |
| Alw21I | GWGCWC | 1 cut(s) | 299 |
| AlwI | GGATC | 2 cut(s) | 50, 63 |
| AsuHPI | GGTGA | 2 cut(s) | 89, 304 |
| BaeGI | GKGCMC | 1 cut(s) | 48 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 57, 90, 258, 291 |
| BamHI | GGATCC | 1 cut(s) | 55 |
| BbsI | GAAGAC | 1 cut(s) | 40 |
| Bbv12I | GWGCWC | 1 cut(s) | 299 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 301, 335 |
| BciT130I | CCWGG | 2 cut(s) | 49, 171 |
| BfaI | CTAG | 1 cut(s) | 388 |
| Bme1390I | CCNGG | 2 cut(s) | 49, 171 |
| BmiI | GGNNCC | 2 cut(s) | 57, 81 |
| BmrFI | CCNGG | 2 cut(s) | 49, 171 |
| BpiI | GAAGAC | 1 cut(s) | 40 |
| BsaJI | CCNNGG | 2 cut(s) | 47, 170 |
| BseBI | CCWGG | 2 cut(s) | 49, 171 |
| BseDI | CCNNGG | 2 cut(s) | 47, 170 |
| BseGI | GGATG | 1 cut(s) | 157 |
| BseMII | CTCAG | 1 cut(s) | 32 |
| BseSI | GKGCMC | 1 cut(s) | 48 |
| BsiHKAI | GWGCWC | 1 cut(s) | 299 |
| Bsp1286I | GDGCHC | 2 cut(s) | 48, 299 |
| Bsp143I | GATC | 1 cut(s) | 55 |
| BspCNI | CTCAG | 1 cut(s) | 31 |
| BspLI | GGNNCC | 2 cut(s) | 57, 81 |
| BspPI | GGATC | 2 cut(s) | 50, 63 |
| BssECI | CCNNGG | 2 cut(s) | 47, 170 |
| BssMI | GATC | 1 cut(s) | 55 |
| Bst2UI | CCWGG | 2 cut(s) | 49, 171 |
| BstDEI | CTNAG | 2 cut(s) | 18, 271 |
| BstF5I | GGATG | 1 cut(s) | 157 |
| BstKTI | GATC | 1 cut(s) | 58 |
| BstMBI | GATC | 1 cut(s) | 55 |
| BstNI | CCWGG | 2 cut(s) | 49, 171 |
| BstNSI | RCATGY | 1 cut(s) | 131 |
| BstSCI | CCNGG | 2 cut(s) | 47, 169 |
| BstSLI | GKGCMC | 1 cut(s) | 48 |
| BstV2I | GAAGAC | 1 cut(s) | 40 |
| BstX2I | RGATCY | 1 cut(s) | 55 |
| BstYI | RGATCY | 1 cut(s) | 55 |
| BtsCI | GGATG | 1 cut(s) | 157 |
| Csp6I | GTAC | 1 cut(s) | 275 |
| CviAII | CATG | 1 cut(s) | 128 |
| CviJI | RGCY | 2 cut(s) | 164, 254 |
| CviKI_1 | RGCY | 2 cut(s) | 164, 254 |
| CviQI | GTAC | 1 cut(s) | 275 |
| DdeI | CTNAG | 2 cut(s) | 18, 271 |
| DpnI | GATC | 1 cut(s) | 57 |
| DpnII | GATC | 1 cut(s) | 55 |
| EcoRII | CCWGG | 2 cut(s) | 47, 169 |
| FaeI | CATG | 1 cut(s) | 131 |
| FaiI | YATR | 6 cut(s) | 105, 129, 180, 261, 329, 356 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 254, 286 |
| FatI | CATG | 1 cut(s) | 127 |
| FokI | GGATG | 1 cut(s) | 164 |
| FspBI | CTAG | 1 cut(s) | 388 |
| Hin1II | CATG | 1 cut(s) | 131 |
| HincII | GTYRAC | 1 cut(s) | 204 |
| HindII | GTYRAC | 1 cut(s) | 204 |
| HindIII | AAGCTT | 1 cut(s) | 252 |
| HinfI | GANTC | 1 cut(s) | 286 |
| HpaI | GTTAAC | 1 cut(s) | 204 |
| HphI | GGTGA | 2 cut(s) | 89, 304 |
| Hpy166II | GTNNAC | 1 cut(s) | 204 |
| Hpy188I | TCNGA | 1 cut(s) | 199 |
| Hpy8I | GTNNAC | 1 cut(s) | 204 |
| HpyAV | CCTTC | 1 cut(s) | 46 |
| HpyCH4V | TGCA | 1 cut(s) | 366 |
| HpyF3I | CTNAG | 2 cut(s) | 18, 271 |
| Hsp92II | CATG | 1 cut(s) | 131 |
| KspAI | GTTAAC | 1 cut(s) | 204 |
| Kzo9I | GATC | 1 cut(s) | 55 |
| LpnPI | CCDG | 7 cut(s) | 19, 34, 54, 61, 156, 183, 275 |
| MaeI | CTAG | 1 cut(s) | 388 |
| MalI | GATC | 1 cut(s) | 57 |
| MboI | GATC | 1 cut(s) | 55 |
| MboII | GAAGA | 3 cut(s) | 45, 227, 239 |
| MflI | RGATCY | 1 cut(s) | 55 |
| MhlI | GDGCHC | 2 cut(s) | 48, 299 |
| MnlI | CCTC | 3 cut(s) | 48, 70, 154 |
| MseI | TTAA | 2 cut(s) | 203, 380 |
| MslI | CAYNNNNRTG | 1 cut(s) | 102 |
| MspR9I | CCNGG | 2 cut(s) | 49, 171 |
| MvaI | CCWGG | 2 cut(s) | 49, 171 |
| NdeII | GATC | 1 cut(s) | 55 |
| NlaIII | CATG | 1 cut(s) | 131 |
| NlaIV | GGNNCC | 2 cut(s) | 57, 81 |
| NspI | RCATGY | 1 cut(s) | 131 |
| PciI | ACATGT | 1 cut(s) | 127 |
| PfeI | GAWTC | 1 cut(s) | 286 |
| PscI | ACATGT | 1 cut(s) | 127 |
| PsiI | TTATAA | 1 cut(s) | 261 |
| Psp6I | CCWGG | 2 cut(s) | 47, 169 |
| PspGI | CCWGG | 2 cut(s) | 47, 169 |
| PspN4I | GGNNCC | 2 cut(s) | 57, 81 |
| PsuI | RGATCY | 1 cut(s) | 55 |
| RsaI | GTAC | 1 cut(s) | 276 |
| RsaNI | GTAC | 1 cut(s) | 275 |
| RseI | CAYNNNNRTG | 1 cut(s) | 102 |
| SaqAI | TTAA | 2 cut(s) | 203, 380 |
| Sau3AI | GATC | 1 cut(s) | 55 |
| ScrFI | CCNGG | 2 cut(s) | 49, 171 |
| SduI | GDGCHC | 2 cut(s) | 48, 299 |
| SetI | ASST | 4 cut(s) | 40, 85, 256, 272 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 102 |
| SspI | AATATT | 1 cut(s) | 245 |
| SspMI | CTAG | 1 cut(s) | 388 |
| StyD4I | CCNGG | 2 cut(s) | 47, 169 |
| TfiI | GAWTC | 1 cut(s) | 286 |
| Tru1I | TTAA | 2 cut(s) | 203, 380 |
| Tru9I | TTAA | 2 cut(s) | 203, 380 |
| TspDTI | ATGAA | 1 cut(s) | 240 |
| XceI | RCATGY | 1 cut(s) | 131 |
| XspI | CTAG | 1 cut(s) | 388 |