Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0005441

Physical Location & Seq

Genomic Coordinates Reverse (-)

66253715 .. 66257000

Gene Structure 3286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G038700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGCAACCCCTCACCAATTCCTCTTCACCTAAAACCCTAAACCCTCCAAACCCCAACCCAAATGGACCCCTCCCCATCTCACCCATTCCCCTCGCACCAACCTCTTCAAACCCAAAGCCTCCAGCTCCGACAATTAAGTTCTTGTGGGTTCCGATAAAAAATATTGACTGGCAAATTAAACGAGATCCTTATCGCTTTCGGTTTCCAATTGAACTGCGTTTTGTCTATCCTAATATAGACCACCATATCTTTAACAGATTTGACTTTCCACCAATATTTCATCATGCTGAAGATACTAATCCAGATGAATTACGGCGTGATTGTGGAAGACCTCCTGTGCCCAGGAAAGATCCAAAAGATAAGCCGGTAGAGGAACCTTTATTGTCAAATCACCCTTATGTTGATAAGTTGTGGCAGATACTTGTTGCTGAACAGATGATTGTGGATGATGTGGAGGCTAATCCTGAAAAATATAAAGACAAAAAGCTATCAGAGTTAACTGATACTGAAGATTTGAATGAAGAAAACTGTATTGAATATACAAAAGCCTATTATAAGAAAACCTTAGTACCAAAAGTGATTCTGAAAACAAGCGTTAAAGAACTTGACCTGGAGGCTGCCTTTGCTGAGCGTCAGCTTCGTAACACACTAAGAAGGGAAACAGAAGAGAGAGGAGAGGAATACAAAGTTACCAAAATGAGGCGCAATATTGAGATGGACGAGTATGAGTTCTTACATTGGCGTCGATCATTGGAGGAAAGAGAAGCTTTGATCAGGGATATAAGCTGCCGTAAAGCTCTTGGTCTACCACTGGAAGAGCCAGGGAGGTATGTGGAAGACAGCTATTTTGGGAAGGATCAATATGACCCAGACAATGCTCTATATCGGTATGACCACTGGGGAGAACCAAAGAACTCCGAGAAGAGCAAGCAGGAACGGCTAACAGATGCTCACAACAAAGCTATTGTTGGAAAGAGTACCCGTTTGCAGATGGAAAGAGAAGCCAAGGGAATAAAACCAAGAGAATATGAGGAGGAAGATACAAACATAGATGATGATGATGAAGATGATGACGATGATGACTTTGATTTCAACTTCTTGAATGAAACCGTTGATATGACCATGCAGCCCCATGTTAATGGGACAGAATCTCCTGGAATTTCTGATGAGGGCATGTTTGAGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0005829 GO:0009295 GO:0009507 GO:0009508 GO:0009532 GO:0009536 GO:0009570 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

395

Amino Acids

46.41

Weight (kDa)

4.87

Isoelectric Point (pI)

52.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48500 AT3G48500
fragaria_vesca	FvH4_5g07670 FvH4_5g07670 FvH4_5g07670
malus_domestica	MD14G1162400.v1.1
prunus_persica	Prupe.5G155500_v2.0.a1
pyrus_communis	pycom14g13530
rosa_chinensis	RchiOBHm_Chr1g0380381 RchiOBHm_Chr7g0190801
rosa_laevigata	RLG00000004495 RLG00000004556 RLG00000026308
rosa_multiflora	Rmu_sc0002819.1_g000003 Rmu_sc0003249.1_g000020
rosa_roxburghii	Rroxscaffold_3G00264290 Rroxscaffold_4G00279440
rosa_rugosa	Rorug04G0085500 Rorug06G0507200
rosa_samantha	Rh1CG414500 Rh4AG090600 Rh4BG147500 Rh4CG098900 Rh7AG113800 Rh7BG116400 Rh7CG119100 Rh7DG117700
rosa_wichuraiana	Rw1G038700 Rw7G009930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	555
AccI	GTMKAC	1 cut(s)	805
AclWI	GGATC	3 cut(s)	179, 344, 864
AcsI	RAATTY	1 cut(s)	1158
AcuI	CTGAAG	2 cut(s)	309, 528
AcyI	GRCGYC	1 cut(s)	742
AfaI	GTAC	2 cut(s)	570, 979
AfiI	CCNNNNNNNGG	1 cut(s)	699
AgsI	TTSAA	6 cut(s)	108, 212, 517, 536, 1093, 1102
AjnI	CCWGG	4 cut(s)	341, 609, 820, 1153
AluBI	AGCT	8 cut(s)	125, 487, 637, 767, 786, 797, 843, 962
AluI	AGCT	8 cut(s)	125, 487, 637, 767, 786, 797, 843, 962
AlwI	GGATC	3 cut(s)	179, 344, 864
ApeKI	GCWGC	3 cut(s)	617, 786, 1126
ApoI	RAATTY	1 cut(s)	1158
ArsI	GACNNNNNNTTYG	2 cut(s)	830, 862
AspLEI	GCGC	1 cut(s)	705
AspS9I	GGNCC	1 cut(s)	65
AsuHPI	GGTGA	4 cut(s)	4, 18, 72, 383
AvaII	GGWCC	1 cut(s)	65
BaeGI	GKGCMC	1 cut(s)	342
BaeI	ACNNNNGTAYC	2 cut(s)	552, 585
BbsI	GAAGAC	2 cut(s)	334, 843
BbvI	GCAGC	3 cut(s)	604, 773, 1138
BccI	CCATC	3 cut(s)	83, 709, 985
BceAI	ACGGC	3 cut(s)	329, 774, 953
BciT130I	CCWGG	4 cut(s)	343, 611, 822, 1155
BclI	TGATCA	1 cut(s)	771
BisI	GCNGC	3 cut(s)	618, 787, 1127
BlpI	GCTNAGC	1 cut(s)	627
BlsI	GCNGC	3 cut(s)	619, 788, 1128
Bme1390I	CCNGG	4 cut(s)	343, 611, 822, 1155
Bme18I	GGWCC	1 cut(s)	65
BmgT120I	GGNCC	1 cut(s)	65
BmiI	GGNNCC	3 cut(s)	67, 150, 375
BmrFI	CCNGG	4 cut(s)	343, 611, 822, 1155
BmrI	ACTGGG	1 cut(s)	907
BmsI	GCATC	1 cut(s)	937
BmuI	ACTGGG	1 cut(s)	907
BpiI	GAAGAC	2 cut(s)	334, 843
BpmI	CTGGAG	2 cut(s)	105, 632
Bpu1102I	GCTNAGC	1 cut(s)	627
BsaBI	GATNNNNATC	2 cut(s)	189, 297
BsaHI	GRCGYC	1 cut(s)	742
BsaJI	CCNNGG	3 cut(s)	341, 821, 1005
BsaXI	ACNNNNNCTCC	2 cut(s)	1135, 1165
Bsc4I	CCNNNNNNNGG	1 cut(s)	699
Bse118I	RCCGGY	1 cut(s)	364
Bse1I	ACTGG	3 cut(s)	173, 816, 902
Bse8I	GATNNNNATC	2 cut(s)	189, 297
BseBI	CCWGG	4 cut(s)	343, 611, 822, 1155
BseDI	CCNNGG	3 cut(s)	341, 821, 1005
BseGI	GGATG	1 cut(s)	451
BseJI	GATNNNNATC	2 cut(s)	189, 297
BseLI	CCNNNNNNNGG	1 cut(s)	699
BseMII	CTCAG	1 cut(s)	618
BseNI	ACTGG	3 cut(s)	173, 816, 902
BseRI	GAGGAG	2 cut(s)	687, 1046
BseSI	GKGCMC	1 cut(s)	342
BseXI	GCAGC	3 cut(s)	604, 773, 1138
BsiSI	CCGG	1 cut(s)	365
BslFI	GGGAC	1 cut(s)	1156
BslI	CCNNNNNNNGG	1 cut(s)	699
BsmFI	GGGAC	1 cut(s)	1156
Bsp1286I	GDGCHC	1 cut(s)	342
Bsp143I	GATC	5 cut(s)	184, 349, 746, 771, 856
Bsp1720I	GCTNAGC	1 cut(s)	627
BspCNI	CTCAG	1 cut(s)	619
BspLI	GGNNCC	3 cut(s)	67, 150, 375
BspPI	GGATC	3 cut(s)	179, 344, 864
BspQI	GCTCTTC	2 cut(s)	810, 917
BsrFI	RCCGGY	1 cut(s)	364
BsrI	ACTGG	3 cut(s)	173, 816, 902
BssAI	RCCGGY	1 cut(s)	364
BssECI	CCNNGG	3 cut(s)	341, 821, 1005
BssMI	GATC	5 cut(s)	184, 349, 746, 771, 856
BssNI	GRCGYC	1 cut(s)	742
BssT1I	CCWWGG	1 cut(s)	1005
Bst2UI	CCWGG	4 cut(s)	343, 611, 822, 1155
Bst4CI	ACNGT	2 cut(s)	530, 1111
Bst6I	CTCTTC	5 cut(s)	28, 109, 660, 810, 917
BstACI	GRCGYC	1 cut(s)	742
BstC8I	GCNNGC	1 cut(s)	929
BstDEI	CTNAG	3 cut(s)	565, 627, 650
BstF5I	GGATG	1 cut(s)	451
BstHHI	GCGC	1 cut(s)	705
BstKTI	GATC	5 cut(s)	187, 352, 749, 774, 859
BstMBI	GATC	5 cut(s)	184, 349, 746, 771, 856
BstMWI	GCNNNNNNNGC	2 cut(s)	623, 937
BstNI	CCWGG	4 cut(s)	343, 611, 822, 1155
BstNSI	RCATGY	1 cut(s)	1177
BstSCI	CCNGG	4 cut(s)	341, 609, 820, 1153
BstSLI	GKGCMC	1 cut(s)	342
BstV1I	GCAGC	3 cut(s)	604, 773, 1138
BstV2I	GAAGAC	2 cut(s)	334, 843
BstX2I	RGATCY	2 cut(s)	184, 349
BstXI	CCANNNNNNTGG	1 cut(s)	1139
BstYI	RGATCY	2 cut(s)	184, 349
BtsCI	GGATG	1 cut(s)	451
BtsIMutI	CAGTG	2 cut(s)	809, 895
Cac8I	GCNNGC	1 cut(s)	929
CfoI	GCGC	1 cut(s)	705
Cfr10I	RCCGGY	1 cut(s)	364
Cfr13I	GGNCC	1 cut(s)	65
CseI	GACGC	2 cut(s)	620, 731
Csp6I	GTAC	2 cut(s)	569, 978
CviAII	CATG	4 cut(s)	284, 1123, 1133, 1174
CviQI	GTAC	2 cut(s)	569, 978
DdeI	CTNAG	3 cut(s)	565, 627, 650
DpnI	GATC	5 cut(s)	186, 351, 748, 773, 858
DpnII	GATC	5 cut(s)	184, 349, 746, 771, 856
Eam1104I	CTCTTC	5 cut(s)	28, 109, 660, 810, 917
EarI	CTCTTC	5 cut(s)	28, 109, 660, 810, 917
Eco130I	CCWWGG	1 cut(s)	1005
Eco47I	GGWCC	1 cut(s)	65
Eco57I	CTGAAG	2 cut(s)	309, 528
EcoRII	CCWGG	4 cut(s)	341, 609, 820, 1153
EcoT14I	CCWWGG	1 cut(s)	1005
ErhI	CCWWGG	1 cut(s)	1005
FaeI	CATG	4 cut(s)	287, 1126, 1136, 1177
FalI	AAGNNNNNCTT	4 cut(s)	548, 580, 751, 783
FaqI	GGGAC	1 cut(s)	1156
FatI	CATG	4 cut(s)	283, 1122, 1132, 1173
FbaI	TGATCA	1 cut(s)	771
FblI	GTMKAC	1 cut(s)	805
Fnu4HI	GCNGC	3 cut(s)	618, 787, 1127
FokI	GGATG	1 cut(s)	458
Fsp4HI	GCNGC	3 cut(s)	618, 787, 1127
GlaI	GCGC	1 cut(s)	704
GluI	GCNGC	3 cut(s)	618, 787, 1127
GsuI	CTGGAG	2 cut(s)	105, 632
HapII	CCGG	1 cut(s)	365
HgaI	GACGC	2 cut(s)	620, 731
HhaI	GCGC	1 cut(s)	705
Hin1I	GRCGYC	1 cut(s)	742
Hin1II	CATG	4 cut(s)	287, 1126, 1136, 1177
Hin6I	GCGC	1 cut(s)	703
HinP1I	GCGC	1 cut(s)	703
HincII	GTYRAC	1 cut(s)	498
HindII	GTYRAC	1 cut(s)	498
HindIII	AAGCTT	1 cut(s)	765
HinfI	GANTC	2 cut(s)	580, 1148
HpaI	GTTAAC	1 cut(s)	498
HpaII	CCGG	1 cut(s)	365
HphI	GGTGA	4 cut(s)	4, 18, 72, 383
Hpy166II	GTNNAC	2 cut(s)	498, 806
Hpy188I	TCNGA	6 cut(s)	129, 153, 493, 585, 919, 1165
Hpy188III	TCNNGA	3 cut(s)	302, 464, 1099
Hpy8I	GTNNAC	2 cut(s)	498, 806
Hpy99I	CGWCG	1 cut(s)	747
HpyAV	CCTTC	2 cut(s)	648, 847
HpyCH4III	ACNGT	2 cut(s)	530, 1111
HpyCH4V	TGCA	3 cut(s)	4, 988, 1126
HpyF10VI	GCNNNNNNNGC	2 cut(s)	623, 937
HpyF3I	CTNAG	3 cut(s)	565, 627, 650
Hsp92I	GRCGYC	1 cut(s)	742
Hsp92II	CATG	4 cut(s)	287, 1126, 1136, 1177
HspAI	GCGC	1 cut(s)	703
Ksp22I	TGATCA	1 cut(s)	771
KspAI	GTTAAC	1 cut(s)	498
Kzo9I	GATC	5 cut(s)	184, 349, 746, 771, 856
LguI	GCTCTTC	2 cut(s)	810, 917
LmnI	GCTCC	1 cut(s)	130
Lsp1109I	GCAGC	3 cut(s)	604, 773, 1138
LweI	GCATC	1 cut(s)	937
MaeIII	GTNAC	2 cut(s)	641, 688
MalI	GATC	5 cut(s)	186, 351, 748, 773, 858
MboI	GATC	5 cut(s)	184, 349, 746, 771, 856
MfeI	CAATTG	1 cut(s)	207
MflI	RGATCY	2 cut(s)	184, 349
MhlI	GDGCHC	1 cut(s)	342
MluCI	AATT	6 cut(s)	16, 132, 174, 207, 308, 1158
MmeI	TCCRAC	2 cut(s)	152, 949
MseI	TTAA	7 cut(s)	135, 177, 252, 497, 597, 1137, 1186
MslI	CAYNNNNRTG	2 cut(s)	396, 1137
MspI	CCGG	1 cut(s)	365
MspR9I	CCNGG	4 cut(s)	343, 611, 822, 1155
MunI	CAATTG	1 cut(s)	207
MvaI	CCWGG	4 cut(s)	343, 611, 822, 1155
MwoI	GCNNNNNNNGC	2 cut(s)	623, 937
NdeII	GATC	5 cut(s)	184, 349, 746, 771, 856
NlaIII	CATG	4 cut(s)	287, 1126, 1136, 1177
NlaIV	GGNNCC	3 cut(s)	67, 150, 375
NspI	RCATGY	1 cut(s)	1177
PciSI	GCTCTTC	2 cut(s)	810, 917
PfeI	GAWTC	2 cut(s)	580, 1148
PfoI	TCCNGGA	1 cut(s)	1153
PkrI	GCNGC	3 cut(s)	619, 788, 1128
PsiI	TTATAA	1 cut(s)	555
Psp6I	CCWGG	4 cut(s)	341, 609, 820, 1153
PspGI	CCWGG	4 cut(s)	341, 609, 820, 1153
PspN4I	GGNNCC	3 cut(s)	67, 150, 375
PspPI	GGNCC	1 cut(s)	65
PsuI	RGATCY	2 cut(s)	184, 349
RsaI	GTAC	2 cut(s)	570, 979
RsaNI	GTAC	2 cut(s)	569, 978
RseI	CAYNNNNRTG	2 cut(s)	396, 1137
SapI	GCTCTTC	2 cut(s)	810, 917
SaqAI	TTAA	7 cut(s)	135, 177, 252, 497, 597, 1137, 1186
SatI	GCNGC	3 cut(s)	618, 787, 1127
Sau3AI	GATC	5 cut(s)	184, 349, 746, 771, 856
Sau96I	GGNCC	1 cut(s)	65
ScrFI	CCNGG	4 cut(s)	343, 611, 822, 1155
SduI	GDGCHC	1 cut(s)	342
SfaNI	GCATC	1 cut(s)	937
SinI	GGWCC	1 cut(s)	65
SmiMI	CAYNNNNRTG	2 cut(s)	396, 1137
Sse9I	AATT	6 cut(s)	16, 132, 174, 207, 308, 1158
SspI	AATATT	3 cut(s)	163, 276, 709
StyD4I	CCNGG	4 cut(s)	341, 609, 820, 1153
StyI	CCWWGG	1 cut(s)	1005
TaaI	ACNGT	2 cut(s)	530, 1111
TaqI	TCGA	1 cut(s)	745
TasI	AATT	6 cut(s)	16, 132, 174, 207, 308, 1158
TfiI	GAWTC	2 cut(s)	580, 1148
Tru1I	TTAA	7 cut(s)	135, 177, 252, 497, 597, 1137, 1186
Tru9I	TTAA	7 cut(s)	135, 177, 252, 497, 597, 1137, 1186
TscAI	CASTG	2 cut(s)	816, 902
TseI	GCWGC	3 cut(s)	617, 786, 1126
TspDTI	ATGAA	5 cut(s)	269, 321, 534, 1077, 1119
TspRI	CASTG	2 cut(s)	816, 902
VpaK11BI	GGWCC	1 cut(s)	65
XapI	RAATTY	1 cut(s)	1158
XceI	RCATGY	1 cut(s)	1177
XmiI	GTMKAC	1 cut(s)	805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.