Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003249.1

Orthogroup ID

OG0005441

Physical Location & Seq

Genomic Coordinates Reverse (-)

77428 .. 78095

Gene Structure 668 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003249.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

atgaggcgcaatattgagatggacgagtatgagttcttacattggcgtcgatcattggaggaaagagaagctttgatctgggatataagctgccgtaaagctcttggtctaccactggaagagccagggaggtatgtggaagaaagctattttgggaaggatcaatatgacccagacaatgctctatatcggtatgaccactggggagaaccaaagaactcagagaagagcaagcaggaacggctaacagatgctcacaacaaagctattgttggaaagagtacccgtttggaggaagatacgaacatagatgatgatgatgaagatgatgacgatgatgactttgatttcaacttcttgaatgaaaccgttgatatgaccacgcagccccatgttaataggacagaatctcctggaatttctgatgaggccatgtttgaggattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0005829 GO:0009295 GO:0009507 GO:0009508 GO:0009532 GO:0009536 GO:0009570 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

148

Amino Acids

17.6

Weight (kDa)

4.31

Isoelectric Point (pI)

53.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48500 AT3G48500
fragaria_vesca	FvH4_5g07670 FvH4_5g07670 FvH4_5g07670
malus_domestica	MD14G1162400.v1.1
prunus_persica	Prupe.5G155500_v2.0.a1
pyrus_communis	pycom14g13530
rosa_chinensis	RchiOBHm_Chr1g0380381 RchiOBHm_Chr7g0190801
rosa_laevigata	RLG00000004495 RLG00000004556 RLG00000026308
rosa_multiflora	Rmu_sc0002819.1_g000003 Rmu_sc0003249.1_g000020
rosa_roxburghii	Rroxscaffold_3G00264290 Rroxscaffold_4G00279440
rosa_rugosa	Rorug04G0085500 Rorug06G0507200
rosa_samantha	Rh1CG414500 Rh4AG090600 Rh4BG147500 Rh4CG098900 Rh7AG113800 Rh7BG116400 Rh7CG119100 Rh7DG117700
rosa_wichuraiana	Rw1G038700 Rw7G009930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	109
AclWI	GGATC	1 cut(s)	168
AcsI	RAATTY	1 cut(s)	417
AcyI	GRCGYC	1 cut(s)	46
AfaI	GTAC	1 cut(s)	283
AfiI	CCNNNNNNNGG	1 cut(s)	292
AgsI	TTSAA	2 cut(s)	352, 361
AjnI	CCWGG	2 cut(s)	124, 412
AjuI	GAANNNNNNNTTGG	2 cut(s)	135, 167
AluBI	AGCT	5 cut(s)	71, 90, 101, 147, 266
AluI	AGCT	5 cut(s)	71, 90, 101, 147, 266
AlwI	GGATC	1 cut(s)	168
AoxI	GGCC	1 cut(s)	429
ApeKI	GCWGC	2 cut(s)	90, 385
ApoI	RAATTY	1 cut(s)	417
AspLEI	GCGC	1 cut(s)	9
BbvI	GCAGC	2 cut(s)	77, 397
BccI	CCATC	1 cut(s)	13
BceAI	ACGGC	2 cut(s)	78, 257
BciT130I	CCWGG	2 cut(s)	126, 414
BisI	GCNGC	2 cut(s)	91, 386
BlsI	GCNGC	2 cut(s)	92, 387
Bme1390I	CCNGG	2 cut(s)	126, 414
BmrFI	CCNGG	2 cut(s)	126, 414
BmrI	ACTGGG	1 cut(s)	211
BmsI	GCATC	1 cut(s)	241
BmuI	ACTGGG	1 cut(s)	211
BsaHI	GRCGYC	1 cut(s)	46
BsaJI	CCNNGG	1 cut(s)	125
BsaXI	ACNNNNNCTCC	2 cut(s)	394, 424
Bsc4I	CCNNNNNNNGG	1 cut(s)	292
Bse1I	ACTGG	2 cut(s)	120, 206
BseBI	CCWGG	2 cut(s)	126, 414
BseDI	CCNNGG	1 cut(s)	125
BseLI	CCNNNNNNNGG	1 cut(s)	292
BseMII	CTCAG	1 cut(s)	234
BseNI	ACTGG	2 cut(s)	120, 206
BseXI	GCAGC	2 cut(s)	77, 397
BshFI	GGCC	1 cut(s)	431
BslI	CCNNNNNNNGG	1 cut(s)	292
BsnI	GGCC	1 cut(s)	431
Bsp143I	GATC	3 cut(s)	50, 75, 160
BspANI	GGCC	1 cut(s)	431
BspCNI	CTCAG	1 cut(s)	233
BspPI	GGATC	1 cut(s)	168
BspQI	GCTCTTC	2 cut(s)	114, 221
BsrI	ACTGG	2 cut(s)	120, 206
BssECI	CCNNGG	1 cut(s)	125
BssMI	GATC	3 cut(s)	50, 75, 160
BssNI	GRCGYC	1 cut(s)	46
Bst2UI	CCWGG	2 cut(s)	126, 414
Bst4CI	ACNGT	1 cut(s)	370
Bst6I	CTCTTC	2 cut(s)	114, 221
BstACI	GRCGYC	1 cut(s)	46
BstC8I	GCNNGC	1 cut(s)	233
BstDEI	CTNAG	1 cut(s)	220
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	3 cut(s)	53, 78, 163
BstMBI	GATC	3 cut(s)	50, 75, 160
BstMWI	GCNNNNNNNGC	1 cut(s)	241
BstNI	CCWGG	2 cut(s)	126, 414
BstSCI	CCNGG	2 cut(s)	124, 412
BstV1I	GCAGC	2 cut(s)	77, 397
BsuRI	GGCC	1 cut(s)	431
BtsIMutI	CAGTG	2 cut(s)	113, 199
Cac8I	GCNNGC	1 cut(s)	233
CfoI	GCGC	1 cut(s)	9
CseI	GACGC	1 cut(s)	35
Csp6I	GTAC	1 cut(s)	282
CviAII	CATG	2 cut(s)	392, 433
CviJI	RGCY	9 cut(s)	71, 90, 101, 124, 147, 244, 266, 388, 431
CviKI_1	RGCY	9 cut(s)	71, 90, 101, 124, 147, 244, 266, 388, 431
CviQI	GTAC	1 cut(s)	282
DdeI	CTNAG	1 cut(s)	220
DpnI	GATC	3 cut(s)	52, 77, 162
DpnII	GATC	3 cut(s)	50, 75, 160
Eam1104I	CTCTTC	2 cut(s)	114, 221
EarI	CTCTTC	2 cut(s)	114, 221
EcoRII	CCWGG	2 cut(s)	124, 412
FaeI	CATG	2 cut(s)	395, 436
FalI	AAGNNNNNCTT	2 cut(s)	55, 87
FatI	CATG	2 cut(s)	391, 432
FblI	GTMKAC	1 cut(s)	109
Fnu4HI	GCNGC	2 cut(s)	91, 386
Fsp4HI	GCNGC	2 cut(s)	91, 386
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	2 cut(s)	91, 386
HaeIII	GGCC	1 cut(s)	431
HgaI	GACGC	1 cut(s)	35
HhaI	GCGC	1 cut(s)	9
Hin1I	GRCGYC	1 cut(s)	46
Hin1II	CATG	2 cut(s)	395, 436
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HindIII	AAGCTT	1 cut(s)	69
HinfI	GANTC	1 cut(s)	407
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188I	TCNGA	2 cut(s)	223, 424
Hpy188III	TCNNGA	1 cut(s)	358
Hpy8I	GTNNAC	1 cut(s)	110
Hpy99I	CGWCG	1 cut(s)	51
HpyAV	CCTTC	1 cut(s)	151
HpyCH4III	ACNGT	1 cut(s)	370
HpyF10VI	GCNNNNNNNGC	1 cut(s)	241
HpyF3I	CTNAG	1 cut(s)	220
Hsp92I	GRCGYC	1 cut(s)	46
Hsp92II	CATG	2 cut(s)	395, 436
HspAI	GCGC	1 cut(s)	7
Kzo9I	GATC	3 cut(s)	50, 75, 160
LguI	GCTCTTC	2 cut(s)	114, 221
LpnPI	CCDG	9 cut(s)	64, 101, 111, 138, 186, 187, 221, 399, 426
Lsp1109I	GCAGC	2 cut(s)	77, 397
LweI	GCATC	1 cut(s)	241
MalI	GATC	3 cut(s)	52, 77, 162
MboI	GATC	3 cut(s)	50, 75, 160
MboII	GAAGA	5 cut(s)	131, 152, 238, 308, 335
MluCI	AATT	1 cut(s)	417
MmeI	TCCRAC	1 cut(s)	253
MnlI	CCTC	5 cut(s)	52, 123, 286, 421, 433
MseI	TTAA	2 cut(s)	396, 445
MspR9I	CCNGG	2 cut(s)	126, 414
MvaI	CCWGG	2 cut(s)	126, 414
MwoI	GCNNNNNNNGC	1 cut(s)	241
NdeII	GATC	3 cut(s)	50, 75, 160
NlaIII	CATG	2 cut(s)	395, 436
PciSI	GCTCTTC	2 cut(s)	114, 221
PfeI	GAWTC	1 cut(s)	407
PfoI	TCCNGGA	1 cut(s)	412
PkrI	GCNGC	2 cut(s)	92, 387
Psp6I	CCWGG	2 cut(s)	124, 412
PspGI	CCWGG	2 cut(s)	124, 412
RsaI	GTAC	1 cut(s)	283
RsaNI	GTAC	1 cut(s)	282
SapI	GCTCTTC	2 cut(s)	114, 221
SaqAI	TTAA	2 cut(s)	396, 445
SatI	GCNGC	2 cut(s)	91, 386
Sau3AI	GATC	3 cut(s)	50, 75, 160
ScrFI	CCNGG	2 cut(s)	126, 414
SetI	ASST	6 cut(s)	73, 92, 103, 134, 149, 268
SfaNI	GCATC	1 cut(s)	241
Sse9I	AATT	1 cut(s)	417
SspI	AATATT	1 cut(s)	13
StyD4I	CCNGG	2 cut(s)	124, 412
TaaI	ACNGT	1 cut(s)	370
TaqI	TCGA	1 cut(s)	49
TasI	AATT	1 cut(s)	417
TfiI	GAWTC	1 cut(s)	407
Tru1I	TTAA	2 cut(s)	396, 445
Tru9I	TTAA	2 cut(s)	396, 445
TscAI	CASTG	2 cut(s)	120, 206
TseI	GCWGC	2 cut(s)	90, 385
TspDTI	ATGAA	2 cut(s)	336, 378
TspRI	CASTG	2 cut(s)	120, 206
XapI	RAATTY	1 cut(s)	417
XmiI	GTMKAC	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.