Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0005441

Physical Location & Seq

Genomic Coordinates Reverse (-)

26297647 .. 26307021

Gene Structure 9375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG147500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGTATGAACTTCCGTTTTATTACCCCGGACAAATCTGTGAAGGAAAAGTGACATCTATACATCTGTATCAAGGAGCATTTGTGGACATCGGAGGTGTGTATGATGGGTGGGTTCCTATAAAAAATAACGACTGGTACTGGATCCGCCATCACATAAAAGTTGGTATGCGTGTCATGGTTGAAATTCTGGCAAAACGAGATCCTTATCGCTTTCGGTTTCCAATTGAATTGCGTTTTGTCTATCCGAATATAGACCACCTTATCTTTAACAGGTTTGACTTTCCACCAATATTTCATCATGATGAAGATACTAATCCAGACGAATTACGGCGTGATTGTGGAAGACCTCCTGTGCCCAGGAAGGATCCAAAAGATAAGCCCGTAGAGGAACCTTTATTGTCAAATCACCCTTATGTTGATAAGTTGTGGCAGATACATGTTGCTGAACAGATGATTTTGGATGATGTGGAGGCTAATCCTGGGAAATATAAAGACAAAAAACTATCAGAGTTAACTGATGCTGAAGATTTGAATGAAGAAAATAGTATTGAATATTCAAAAGCTTATTATAAGAAAACCTTAGTACCAAAAGTGATTCTGAAAACAAGCGTTAAAGAACTTGACCTGGAGGCTGCCTTTGCTGAGCGTCAGCTACGTAACACACTAAGAAGGGAGACAGAAGAGAGAGGAGAGGAATACAAAGTTACCAAAATGAGGCGCAATGTTGAGATGGACGAGTATGACTTCTTACAATTGGCGTCGATCATTGGAGGAAAGAGAAGCTTTGATCAGAGATATAAGCTGGTCAATCAGTACTTTCCCGTCCCCATTGTGGATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0005829 GO:0009295 GO:0009507 GO:0009508 GO:0009532 GO:0009536 GO:0009570 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

280

Amino Acids

33.32

Weight (kDa)

5.83

Isoelectric Point (pI)

49.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48500 AT3G48500
fragaria_vesca	FvH4_5g07670 FvH4_5g07670 FvH4_5g07670
malus_domestica	MD14G1162400.v1.1
prunus_persica	Prupe.5G155500_v2.0.a1
pyrus_communis	pycom14g13530
rosa_chinensis	RchiOBHm_Chr1g0380381 RchiOBHm_Chr7g0190801
rosa_laevigata	RLG00000004495 RLG00000004556 RLG00000026308
rosa_multiflora	Rmu_sc0002819.1_g000003 Rmu_sc0003249.1_g000020
rosa_roxburghii	Rroxscaffold_3G00264290 Rroxscaffold_4G00279440
rosa_rugosa	Rorug04G0085500 Rorug06G0507200
rosa_samantha	Rh1CG414500 Rh4AG090600 Rh4BG147500 Rh4CG098900 Rh7AG113800 Rh7BG116400 Rh7CG119100 Rh7DG117700
rosa_wichuraiana	Rw1G038700 Rw7G009930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	570
AciI	CCGC	1 cut(s)	145
AclWI	GGATC	5 cut(s)	136, 149, 194, 359, 372
AcsI	RAATTY	1 cut(s)	183
AcuI	CTGAAG	1 cut(s)	543
AcyI	GRCGYC	1 cut(s)	758
AfaI	GTAC	3 cut(s)	137, 585, 815
AfiI	CCNNNNNNNGG	2 cut(s)	714, 832
AflIII	ACRYGT	1 cut(s)	436
AgsI	TTSAA	5 cut(s)	182, 227, 532, 551, 558
AjnI	CCWGG	3 cut(s)	356, 478, 624
AluBI	AGCT	4 cut(s)	563, 652, 783, 802
AluI	AGCT	4 cut(s)	563, 652, 783, 802
Alw26I	GTCTC	1 cut(s)	668
AlwI	GGATC	5 cut(s)	136, 149, 194, 359, 372
ApeKI	GCWGC	1 cut(s)	632
ApoI	RAATTY	1 cut(s)	183
AspLEI	GCGC	1 cut(s)	720
AsuC2I	CCSGG	1 cut(s)	27
AsuHPI	GGTGA	1 cut(s)	398
BaeGI	GKGCMC	1 cut(s)	357
BaeI	ACNNNNGTAYC	4 cut(s)	50, 83, 567, 600
BamHI	GGATCC	2 cut(s)	141, 364
BbsI	GAAGAC	1 cut(s)	349
BbvI	GCAGC	1 cut(s)	619
BccI	CCATC	3 cut(s)	98, 156, 724
BceAI	ACGGC	1 cut(s)	344
BciT130I	CCWGG	3 cut(s)	358, 480, 626
BclI	TGATCA	1 cut(s)	787
BcnI	CCSGG	1 cut(s)	27
BcoDI	GTCTC	1 cut(s)	668
BisI	GCNGC	1 cut(s)	633
BlpI	GCTNAGC	1 cut(s)	642
BlsI	GCNGC	1 cut(s)	634
BmcAI	AGTACT	1 cut(s)	815
Bme1390I	CCNGG	4 cut(s)	27, 358, 480, 626
BmiI	GGNNCC	4 cut(s)	114, 143, 366, 390
BmrFI	CCNGG	4 cut(s)	27, 358, 480, 626
BmsI	GCATC	1 cut(s)	508
BpiI	GAAGAC	1 cut(s)	349
BpmI	CTGGAG	1 cut(s)	647
Bpu1102I	GCTNAGC	1 cut(s)	642
BpuMI	CCSGG	1 cut(s)	27
BsaAI	YACGTR	1 cut(s)	656
BsaBI	GATNNNNATC	2 cut(s)	204, 312
BsaHI	GRCGYC	1 cut(s)	758
BsaJI	CCNNGG	3 cut(s)	25, 356, 479
BsaXI	ACNNNNNCTCC	2 cut(s)	66, 96
Bsc4I	CCNNNNNNNGG	2 cut(s)	714, 832
Bse1I	ACTGG	2 cut(s)	137, 143
Bse3DI	GCAATG	1 cut(s)	727
Bse8I	GATNNNNATC	2 cut(s)	204, 312
BseBI	CCWGG	3 cut(s)	358, 480, 626
BseDI	CCNNGG	3 cut(s)	25, 356, 479
BseGI	GGATG	1 cut(s)	466
BseJI	GATNNNNATC	2 cut(s)	204, 312
BseLI	CCNNNNNNNGG	2 cut(s)	714, 832
BseMI	GCAATG	1 cut(s)	727
BseMII	CTCAG	1 cut(s)	633
BseNI	ACTGG	2 cut(s)	137, 143
BseRI	GAGGAG	1 cut(s)	702
BseSI	GKGCMC	1 cut(s)	357
BseXI	GCAGC	1 cut(s)	619
BsiSI	CCGG	1 cut(s)	27
BslFI	GGGAC	1 cut(s)	809
BslI	CCNNNNNNNGG	2 cut(s)	714, 832
BsmAI	GTCTC	1 cut(s)	668
BsmFI	GGGAC	1 cut(s)	809
Bsp1286I	GDGCHC	1 cut(s)	357
Bsp143I	GATC	5 cut(s)	141, 199, 364, 762, 787
Bsp1720I	GCTNAGC	1 cut(s)	642
BspACI	CCGC	1 cut(s)	145
BspCNI	CTCAG	1 cut(s)	634
BspHI	TCATGA	1 cut(s)	298
BspLI	GGNNCC	4 cut(s)	114, 143, 366, 390
BspPI	GGATC	5 cut(s)	136, 149, 194, 359, 372
BsrDI	GCAATG	1 cut(s)	727
BsrI	ACTGG	2 cut(s)	137, 143
BssECI	CCNNGG	3 cut(s)	25, 356, 479
BssMI	GATC	5 cut(s)	141, 199, 364, 762, 787
BssNI	GRCGYC	1 cut(s)	758
Bst2UI	CCWGG	3 cut(s)	358, 480, 626
Bst6I	CTCTTC	1 cut(s)	675
BstACI	GRCGYC	1 cut(s)	758
BstBAI	YACGTR	1 cut(s)	656
BstDEI	CTNAG	3 cut(s)	580, 642, 665
BstF5I	GGATG	1 cut(s)	466
BstHHI	GCGC	1 cut(s)	720
BstKTI	GATC	5 cut(s)	144, 202, 367, 765, 790
BstMAI	GTCTC	1 cut(s)	668
BstMBI	GATC	5 cut(s)	141, 199, 364, 762, 787
BstMWI	GCNNNNNNNGC	1 cut(s)	638
BstNI	CCWGG	3 cut(s)	358, 480, 626
BstNSI	RCATGY	1 cut(s)	440
BstSCI	CCNGG	4 cut(s)	25, 356, 478, 624
BstSLI	GKGCMC	1 cut(s)	357
BstSNI	TACGTA	1 cut(s)	656
BstV1I	GCAGC	1 cut(s)	619
BstV2I	GAAGAC	1 cut(s)	349
BstX2I	RGATCY	3 cut(s)	141, 199, 364
BstYI	RGATCY	3 cut(s)	141, 199, 364
BtsCI	GGATG	1 cut(s)	466
CciI	TCATGA	1 cut(s)	298
CfoI	GCGC	1 cut(s)	720
CseI	GACGC	2 cut(s)	635, 747
Csp6I	GTAC	3 cut(s)	136, 584, 814
CviAII	CATG	3 cut(s)	175, 299, 437
CviJI	RGCY	7 cut(s)	379, 473, 563, 632, 652, 783, 802
CviKI_1	RGCY	7 cut(s)	379, 473, 563, 632, 652, 783, 802
CviQI	GTAC	3 cut(s)	136, 584, 814
DdeI	CTNAG	3 cut(s)	580, 642, 665
DpnI	GATC	5 cut(s)	143, 201, 366, 764, 789
DpnII	GATC	5 cut(s)	141, 199, 364, 762, 787
Eam1104I	CTCTTC	1 cut(s)	675
EarI	CTCTTC	1 cut(s)	675
EciI	GGCGGA	1 cut(s)	134
Eco105I	TACGTA	1 cut(s)	656
Eco57I	CTGAAG	1 cut(s)	543
EcoRII	CCWGG	3 cut(s)	356, 478, 624
FaeI	CATG	3 cut(s)	178, 302, 440
FalI	AAGNNNNNCTT	4 cut(s)	563, 595, 767, 799
FaqI	GGGAC	1 cut(s)	809
FatI	CATG	3 cut(s)	174, 298, 436
FbaI	TGATCA	1 cut(s)	787
Fnu4HI	GCNGC	1 cut(s)	633
FokI	GGATG	1 cut(s)	473
Fsp4HI	GCNGC	1 cut(s)	633
GlaI	GCGC	1 cut(s)	719
GluI	GCNGC	1 cut(s)	633
GsuI	CTGGAG	1 cut(s)	647
HapII	CCGG	1 cut(s)	27
HgaI	GACGC	2 cut(s)	635, 747
HhaI	GCGC	1 cut(s)	720
Hin1I	GRCGYC	1 cut(s)	758
Hin1II	CATG	3 cut(s)	178, 302, 440
Hin6I	GCGC	1 cut(s)	718
HinP1I	GCGC	1 cut(s)	718
HincII	GTYRAC	1 cut(s)	513
HindII	GTYRAC	1 cut(s)	513
HindIII	AAGCTT	2 cut(s)	561, 781
HinfI	GANTC	1 cut(s)	595
HpaI	GTTAAC	1 cut(s)	513
HpaII	CCGG	1 cut(s)	27
HphI	GGTGA	1 cut(s)	398
Hpy166II	GTNNAC	2 cut(s)	85, 513
Hpy188I	TCNGA	5 cut(s)	92, 246, 508, 600, 792
Hpy188III	TCNNGA	2 cut(s)	299, 317
Hpy8I	GTNNAC	2 cut(s)	85, 513
Hpy99I	CGWCG	1 cut(s)	763
HpyAV	CCTTC	3 cut(s)	35, 355, 663
HpyCH4IV	ACGT	1 cut(s)	655
HpyF10VI	GCNNNNNNNGC	1 cut(s)	638
HpyF3I	CTNAG	3 cut(s)	580, 642, 665
HpySE526I	ACGT	1 cut(s)	655
Hsp92I	GRCGYC	1 cut(s)	758
Hsp92II	CATG	3 cut(s)	178, 302, 440
HspAI	GCGC	1 cut(s)	718
Ksp22I	TGATCA	1 cut(s)	787
KspAI	GTTAAC	1 cut(s)	513
Kzo9I	GATC	5 cut(s)	141, 199, 364, 762, 787
LmnI	GCTCC	1 cut(s)	74
Lsp1109I	GCAGC	1 cut(s)	619
LweI	GCATC	1 cut(s)	508
MaeII	ACGT	1 cut(s)	655
MaeIII	GTNAC	3 cut(s)	49, 656, 703
MalI	GATC	5 cut(s)	143, 201, 366, 764, 789
MboI	GATC	5 cut(s)	141, 199, 364, 762, 787
MboII	GAAGA	5 cut(s)	317, 354, 536, 548, 692
MfeI	CAATTG	2 cut(s)	222, 752
MflI	RGATCY	3 cut(s)	141, 199, 364
MhlI	GDGCHC	1 cut(s)	357
MluCI	AATT	5 cut(s)	183, 222, 227, 323, 752
MnlI	CCTC	9 cut(s)	86, 357, 379, 463, 622, 680, 685, 708, 764
MseI	TTAA	3 cut(s)	267, 512, 612
MslI	CAYNNNNRTG	2 cut(s)	300, 411
MspI	CCGG	1 cut(s)	27
MspR9I	CCNGG	4 cut(s)	27, 358, 480, 626
MunI	CAATTG	2 cut(s)	222, 752
MvaI	CCWGG	3 cut(s)	358, 480, 626
MwoI	GCNNNNNNNGC	1 cut(s)	638
NciI	CCSGG	1 cut(s)	27
NdeII	GATC	5 cut(s)	141, 199, 364, 762, 787
NlaIII	CATG	3 cut(s)	178, 302, 440
NlaIV	GGNNCC	4 cut(s)	114, 143, 366, 390
NmuCI	GTSAC	1 cut(s)	49
NspI	RCATGY	1 cut(s)	440
PagI	TCATGA	1 cut(s)	298
PciI	ACATGT	1 cut(s)	436
PfeI	GAWTC	1 cut(s)	595
PkrI	GCNGC	1 cut(s)	634
Ppu21I	YACGTR	1 cut(s)	656
PscI	ACATGT	1 cut(s)	436
PsiI	TTATAA	1 cut(s)	570
Psp6I	CCWGG	3 cut(s)	356, 478, 624
PspGI	CCWGG	3 cut(s)	356, 478, 624
PspN4I	GGNNCC	4 cut(s)	114, 143, 366, 390
PsuI	RGATCY	3 cut(s)	141, 199, 364
RsaI	GTAC	3 cut(s)	137, 585, 815
RsaNI	GTAC	3 cut(s)	136, 584, 814
RseI	CAYNNNNRTG	2 cut(s)	300, 411
SaqAI	TTAA	3 cut(s)	267, 512, 612
SatI	GCNGC	1 cut(s)	633
Sau3AI	GATC	5 cut(s)	141, 199, 364, 762, 787
ScaI	AGTACT	1 cut(s)	815
ScrFI	CCNGG	4 cut(s)	27, 358, 480, 626
SduI	GDGCHC	1 cut(s)	357
SfaNI	GCATC	1 cut(s)	508
SmiMI	CAYNNNNRTG	2 cut(s)	300, 411
SnaBI	TACGTA	1 cut(s)	656
Sse9I	AATT	5 cut(s)	183, 222, 227, 323, 752
SsiI	CCGC	1 cut(s)	145
SspI	AATATT	2 cut(s)	291, 554
StyD4I	CCNGG	4 cut(s)	25, 356, 478, 624
TaiI	ACGT	1 cut(s)	658
TaqI	TCGA	1 cut(s)	761
TasI	AATT	5 cut(s)	183, 222, 227, 323, 752
TatI	WGTACW	1 cut(s)	813
TfiI	GAWTC	1 cut(s)	595
Tru1I	TTAA	3 cut(s)	267, 512, 612
Tru9I	TTAA	3 cut(s)	267, 512, 612
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	1 cut(s)	632
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	4 cut(s)	21, 284, 318, 549
XapI	RAATTY	1 cut(s)	183
XceI	RCATGY	1 cut(s)	440
ZrmI	AGTACT	1 cut(s)	815

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.