Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005441

Physical Location & Seq

Genomic Coordinates Forward (+)

62222016 .. 62222310

Gene Structure 295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0507200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGGAGAAACCTATGATATATGTGGATGCCCAAACAGTCACTGACCAGTGTGGCAAGGCTTCAGAGCTCAAAAATTCAAAGCATGCATCTTCACTATGGTCCAAGAGTAGAATAAATAAGAACTTGCCTGTCCACTTATTTGATCAACTAGAAGATAGGCCTCTTGCCTTGCTTGATGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0005829 GO:0009295 GO:0009507 GO:0009508 GO:0009532 GO:0009536 GO:0009570 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

60

Amino Acids

6.77

Weight (kDa)

6.71

Isoelectric Point (pI)

30.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48500 AT3G48500
fragaria_vesca	FvH4_5g07670 FvH4_5g07670 FvH4_5g07670
malus_domestica	MD14G1162400.v1.1
prunus_persica	Prupe.5G155500_v2.0.a1
pyrus_communis	pycom14g13530
rosa_chinensis	RchiOBHm_Chr1g0380381 RchiOBHm_Chr7g0190801
rosa_laevigata	RLG00000004495 RLG00000004556 RLG00000026308
rosa_multiflora	Rmu_sc0002819.1_g000003 Rmu_sc0003249.1_g000020
rosa_roxburghii	Rroxscaffold_3G00264290 Rroxscaffold_4G00279440
rosa_rugosa	Rorug04G0085500 Rorug06G0507200
rosa_samantha	Rh1CG414500 Rh4AG090600 Rh4BG147500 Rh4CG098900 Rh7AG113800 Rh7BG116400 Rh7CG119100 Rh7DG117700
rosa_wichuraiana	Rw1G038700 Rw7G009930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	73
AcuI	CTGAAG	1 cut(s)	45
AgsI	TTSAA	1 cut(s)	78
AluBI	AGCT	1 cut(s)	67
AluI	AGCT	1 cut(s)	67
Alw21I	GWGCWC	1 cut(s)	69
AlwNI	CAGNNNCTG	1 cut(s)	41
AoxI	GGCC	1 cut(s)	158
ApoI	RAATTY	1 cut(s)	73
AspS9I	GGNCC	1 cut(s)	99
AvaII	GGWCC	1 cut(s)	99
BanII	GRGCYC	1 cut(s)	69
Bbv12I	GWGCWC	1 cut(s)	69
BccI	CCATC	1 cut(s)	170
BclI	TGATCA	1 cut(s)	142
BfaI	CTAG	1 cut(s)	149
Bme18I	GGWCC	1 cut(s)	99
BmgT120I	GGNCC	1 cut(s)	99
BmsI	GCATC	2 cut(s)	16, 95
Bse1I	ACTGG	1 cut(s)	46
BseGI	GGATG	1 cut(s)	31
BseNI	ACTGG	1 cut(s)	46
BshFI	GGCC	1 cut(s)	160
BsiHKAI	GWGCWC	1 cut(s)	69
BsnI	GGCC	1 cut(s)	160
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	1 cut(s)	142
BspANI	GGCC	1 cut(s)	160
BsrI	ACTGG	1 cut(s)	46
BssMI	GATC	1 cut(s)	142
Bst4CI	ACNGT	1 cut(s)	37
BstC8I	GCNNGC	1 cut(s)	84
BstF5I	GGATG	1 cut(s)	31
BstKTI	GATC	1 cut(s)	145
BstMBI	GATC	1 cut(s)	142
BstNSI	RCATGY	1 cut(s)	86
BsuRI	GGCC	1 cut(s)	160
BtsCI	GGATG	1 cut(s)	31
BtsIMutI	CAGTG	2 cut(s)	39, 53
Cac8I	GCNNGC	1 cut(s)	84
CaiI	CAGNNNCTG	1 cut(s)	41
Cfr13I	GGNCC	1 cut(s)	99
CviAII	CATG	1 cut(s)	83
CviJI	RGCY	3 cut(s)	59, 67, 160
CviKI_1	RGCY	3 cut(s)	59, 67, 160
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
Ecl136II	GAGCTC	1 cut(s)	67
Eco147I	AGGCCT	1 cut(s)	160
Eco24I	GRGCYC	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	99
Eco53kI	GAGCTC	1 cut(s)	67
Eco57I	CTGAAG	1 cut(s)	45
EcoICRI	GAGCTC	1 cut(s)	67
EcoT22I	ATGCAT	1 cut(s)	88
EcoT38I	GRGCYC	1 cut(s)	69
FaeI	CATG	1 cut(s)	86
FaiI	YATR	5 cut(s)	14, 19, 21, 84, 97
FatI	CATG	1 cut(s)	82
FbaI	TGATCA	1 cut(s)	142
FokI	GGATG	1 cut(s)	38
FriOI	GRGCYC	1 cut(s)	69
FspBI	CTAG	1 cut(s)	149
HaeIII	GGCC	1 cut(s)	160
Hin1II	CATG	1 cut(s)	86
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	1 cut(s)	64
Hpy8I	GTNNAC	1 cut(s)	133
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4V	TGCA	1 cut(s)	86
Hsp92II	CATG	1 cut(s)	86
Ksp22I	TGATCA	1 cut(s)	142
Kzo9I	GATC	1 cut(s)	142
LpnPI	CCDG	2 cut(s)	59, 141
LweI	GCATC	2 cut(s)	16, 95
MaeI	CTAG	1 cut(s)	149
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	1 cut(s)	144
MboI	GATC	1 cut(s)	142
MboII	GAAGA	2 cut(s)	81, 164
MhlI	GDGCHC	1 cut(s)	69
MluCI	AATT	1 cut(s)	73
MnlI	CCTC	1 cut(s)	171
Mph1103I	ATGCAT	1 cut(s)	88
NdeII	GATC	1 cut(s)	142
NlaIII	CATG	1 cut(s)	86
NmuCI	GTSAC	1 cut(s)	37
NsiI	ATGCAT	1 cut(s)	88
NspI	RCATGY	1 cut(s)	86
PaeI	GCATGC	1 cut(s)	86
PceI	AGGCCT	1 cut(s)	160
Psp124BI	GAGCTC	1 cut(s)	69
PspPI	GGNCC	1 cut(s)	99
PstNI	CAGNNNCTG	1 cut(s)	41
SacI	GAGCTC	1 cut(s)	69
Sau3AI	GATC	1 cut(s)	142
Sau96I	GGNCC	1 cut(s)	99
SduI	GDGCHC	1 cut(s)	69
SetI	ASST	2 cut(s)	13, 69
SfaNI	GCATC	2 cut(s)	16, 95
SgeI	CNNG	8 cut(s)	58, 67, 95, 115, 136, 140, 161, 176
SinI	GGWCC	1 cut(s)	99
SphI	GCATGC	1 cut(s)	86
Sse9I	AATT	1 cut(s)	73
SseBI	AGGCCT	1 cut(s)	160
SspMI	CTAG	1 cut(s)	149
SstI	GAGCTC	1 cut(s)	69
StuI	AGGCCT	1 cut(s)	160
TaaI	ACNGT	1 cut(s)	37
TasI	AATT	1 cut(s)	73
TscAI	CASTG	2 cut(s)	46, 53
TseFI	GTSAC	1 cut(s)	37
Tsp45I	GTSAC	1 cut(s)	37
TspRI	CASTG	2 cut(s)	46, 53
VpaK11BI	GGWCC	1 cut(s)	99
XapI	RAATTY	1 cut(s)	73
XceI	RCATGY	1 cut(s)	86
XspI	CTAG	1 cut(s)	149
Zsp2I	ATGCAT	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.