Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005441

Physical Location & Seq

Genomic Coordinates Forward (+)

2227283 .. 2233739

Gene Structure 6457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00279440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGACCCCTCCCCATCTCACCCATATTCCCCTCCCACCAACCTCTTCAAACCCAAAGCCTTCAGCTCCGACAATACGGAATGCTTACTAAGTTGTATGGTTGAGAAAGAAACGGTAAAGGGTGTGCCTTTGGTCGCAAGAGACAGAGTGGCTGATGTTACAGTGGGAATATGTGTAAGAGTAAAATCCTCAAATGGTATTCGAACTATGGCTAATGCACATTTTGGTACGAACTTTCAAAACTACCACGATGGTCGAACTATTGCTCCGTTTCTCCATATGGAAAAACGAGATCCTTATCGCTTTCCGTTTCCAATTGAACTGCGTTTTGTCTATCCTAATATAGACCACCTTATCTTTAACAGATTTGACTTTCCACCAATATTTCATCATGATGAAGATACTAATCCAGATGAATTACGGCGTGATTGTGGAAGACCTCCTGTGCCCAGGAAAGATCCAAAAGATAAGCCCGTAGAGGAACCTTTATTGTCAAATCACCCTTACGATAAGTTGTGGCGGATACATGTTGCTGAACAGATGATTGTGGATGATGTGGAGGCTAATCCTGAAAAATATAAAGACAAAAAGCTATCAGAGTTAACTGATACTGAAGATTTGAATGAAGAAAACTGTATTGAATATACAAAAGCCTATTATAAGAAATCCTTAGTACCAAAAGTGATTCTGAAAACAAGCGTTAAAGAACTTGACCTGGAGGCTGCCTTTGCTGAGCGTCAGCTTCGTAACACACTAAGAAGGGAAACAGAAGAGAGAGGAGAGGAATACAAAGTTACCAAAATGAGGTGCAATATTGAGATGGACAAGCATGACTTCTTACATTGGCGTCGATCATTGGAGGAAAGAGAAGCTTTCCGTAAAGCTCTTGGTCTACTACAGGAAGAGCCAGGGAGGTATGTGGAGGACAGCTATTTTGGGAAGGATCAATATGACCCAGACAATGCTCTATACCGGTATGAGTACTGGGGAGAACCAAAGAACTCAGAGAAGAGCAAGCAGGAACGGCTGACAGGTGCTCACAACAAAGCTATTGTTGGAAAGAGTACCGTTTGGTATGAAATGTCATATGACGATTGCATCAAACAGCGGATGGAAAGAGAAGCCAAGGGAATAAACCAAGAGAATATGAAGAGGAAGATACAAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0005829 GO:0009295 GO:0009507 GO:0009508 GO:0009532 GO:0009536 GO:0009570 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

389

Amino Acids

45.85

Weight (kDa)

6.23

Isoelectric Point (pI)

47.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48500 AT3G48500
fragaria_vesca	FvH4_5g07670 FvH4_5g07670 FvH4_5g07670
malus_domestica	MD14G1162400.v1.1
prunus_persica	Prupe.5G155500_v2.0.a1
pyrus_communis	pycom14g13530
rosa_chinensis	RchiOBHm_Chr1g0380381 RchiOBHm_Chr7g0190801
rosa_laevigata	RLG00000004495 RLG00000004556 RLG00000026308
rosa_multiflora	Rmu_sc0002819.1_g000003 Rmu_sc0003249.1_g000020
rosa_roxburghii	Rroxscaffold_3G00264290 Rroxscaffold_4G00279440
rosa_rugosa	Rorug04G0085500 Rorug06G0507200
rosa_samantha	Rh1CG414500 Rh4AG090600 Rh4BG147500 Rh4CG098900 Rh7AG113800 Rh7BG116400 Rh7CG119100 Rh7DG117700
rosa_wichuraiana	Rw1G038700 Rw7G009930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	660
AccI	GTMKAC	1 cut(s)	892
AciI	CCGC	2 cut(s)	520, 1108
AclWI	GGATC	3 cut(s)	287, 452, 951
AcuI	CTGAAG	2 cut(s)	46, 633
AcyI	GRCGYC	1 cut(s)	847
AfaI	GTAC	4 cut(s)	229, 675, 983, 1066
AfiI	CCNNNNNNNGG	1 cut(s)	804
AflIII	ACRYGT	1 cut(s)	526
AgeI	ACCGGT	1 cut(s)	972
AgsI	TTSAA	5 cut(s)	49, 239, 320, 622, 641
AjnI	CCWGG	3 cut(s)	449, 714, 907
AloI	GAACNNNNNNTCC	2 cut(s)	250, 282
AluBI	AGCT	7 cut(s)	66, 592, 742, 872, 884, 930, 1049
AluI	AGCT	7 cut(s)	66, 592, 742, 872, 884, 930, 1049
Alw21I	GWGCWC	1 cut(s)	1039
Alw26I	GTCTC	1 cut(s)	135
AlwI	GGATC	3 cut(s)	287, 452, 951
ApeKI	GCWGC	1 cut(s)	722
ArsI	GACNNNNNNTTYG	2 cut(s)	917, 949
AsiGI	ACCGGT	1 cut(s)	972
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	2 cut(s)	11, 491
AsuII	TTCGAA	1 cut(s)	202
AvaII	GGWCC	1 cut(s)	4
BaeGI	GKGCMC	1 cut(s)	450
BbsI	GAAGAC	1 cut(s)	442
Bbv12I	GWGCWC	1 cut(s)	1039
BbvI	GCAGC	1 cut(s)	709
BccI	CCATC	4 cut(s)	22, 245, 814, 1105
BceAI	ACGGC	2 cut(s)	437, 1040
BciT130I	CCWGG	3 cut(s)	451, 716, 909
BciVI	GTATCC	1 cut(s)	516
BcoDI	GTCTC	1 cut(s)	135
BfmI	CTRYAG	1 cut(s)	896
BfuI	GTATCC	1 cut(s)	516
BisI	GCNGC	1 cut(s)	723
BlpI	GCTNAGC	1 cut(s)	732
BlsI	GCNGC	1 cut(s)	724
BmcAI	AGTACT	1 cut(s)	983
Bme1390I	CCNGG	3 cut(s)	451, 716, 909
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	6, 483
BmrFI	CCNGG	3 cut(s)	451, 716, 909
BmrI	ACTGGG	1 cut(s)	994
BmsI	GCATC	1 cut(s)	1107
BmuI	ACTGGG	1 cut(s)	994
BpiI	GAAGAC	1 cut(s)	442
BpmI	CTGGAG	1 cut(s)	737
Bpu1102I	GCTNAGC	1 cut(s)	732
Bpu14I	TTCGAA	1 cut(s)	202
BsaBI	GATNNNNATC	2 cut(s)	297, 405
BsaHI	GRCGYC	1 cut(s)	847
BsaJI	CCNNGG	3 cut(s)	449, 908, 1125
BsaWI	WCCGGW	1 cut(s)	972
BsaXI	ACNNNNNCTCC	2 cut(s)	250, 280
Bsc4I	CCNNNNNNNGG	1 cut(s)	804
Bse118I	RCCGGY	1 cut(s)	972
Bse1I	ACTGG	1 cut(s)	989
Bse8I	GATNNNNATC	2 cut(s)	297, 405
BseBI	CCWGG	3 cut(s)	451, 716, 909
BseDI	CCNNGG	3 cut(s)	449, 908, 1125
BseGI	GGATG	2 cut(s)	556, 1116
BseJI	GATNNNNATC	2 cut(s)	297, 405
BseLI	CCNNNNNNNGG	1 cut(s)	804
BseMII	CTCAG	2 cut(s)	723, 1017
BseNI	ACTGG	1 cut(s)	989
BseRI	GAGGAG	1 cut(s)	792
BseSI	GKGCMC	1 cut(s)	450
BseXI	GCAGC	1 cut(s)	709
BshTI	ACCGGT	1 cut(s)	972
BsiHKAI	GWGCWC	1 cut(s)	1039
BsiSI	CCGG	1 cut(s)	973
BslI	CCNNNNNNNGG	1 cut(s)	804
BsmAI	GTCTC	1 cut(s)	135
BsmI	GAATGC	1 cut(s)	86
Bsp119I	TTCGAA	1 cut(s)	202
Bsp1286I	GDGCHC	2 cut(s)	450, 1039
Bsp143I	GATC	4 cut(s)	292, 457, 851, 943
Bsp1720I	GCTNAGC	1 cut(s)	732
BspACI	CCGC	2 cut(s)	520, 1108
BspCNI	CTCAG	2 cut(s)	724, 1016
BspHI	TCATGA	1 cut(s)	391
BspLI	GGNNCC	2 cut(s)	6, 483
BspPI	GGATC	3 cut(s)	287, 452, 951
BspQI	GCTCTTC	2 cut(s)	897, 1004
BspT104I	TTCGAA	1 cut(s)	202
BsrFI	RCCGGY	1 cut(s)	972
BsrI	ACTGG	1 cut(s)	989
BssAI	RCCGGY	1 cut(s)	972
BssECI	CCNNGG	3 cut(s)	449, 908, 1125
BssMI	GATC	4 cut(s)	292, 457, 851, 943
BssNI	GRCGYC	1 cut(s)	847
BssT1I	CCWWGG	1 cut(s)	1125
Bst2UI	CCWGG	3 cut(s)	451, 716, 909
Bst4CI	ACNGT	4 cut(s)	115, 163, 635, 1069
Bst6I	CTCTTC	5 cut(s)	50, 765, 897, 1004, 1145
BstACI	GRCGYC	1 cut(s)	847
BstBI	TTCGAA	1 cut(s)	202
BstC8I	GCNNGC	1 cut(s)	1016
BstDEI	CTNAG	5 cut(s)	89, 670, 732, 755, 1003
BstF5I	GGATG	2 cut(s)	556, 1116
BstKTI	GATC	4 cut(s)	295, 460, 854, 946
BstMAI	GTCTC	1 cut(s)	135
BstMBI	GATC	4 cut(s)	292, 457, 851, 943
BstMWI	GCNNNNNNNGC	2 cut(s)	728, 1024
BstNI	CCWGG	3 cut(s)	451, 716, 909
BstNSI	RCATGY	1 cut(s)	530
BstSCI	CCNGG	3 cut(s)	449, 714, 907
BstSFI	CTRYAG	1 cut(s)	896
BstSLI	GKGCMC	1 cut(s)	450
BstV1I	GCAGC	1 cut(s)	709
BstV2I	GAAGAC	1 cut(s)	442
BstX2I	RGATCY	2 cut(s)	292, 457
BstYI	RGATCY	2 cut(s)	292, 457
BsuI	GTATCC	1 cut(s)	516
BtsCI	GGATG	2 cut(s)	556, 1116
BtsIMutI	CAGTG	1 cut(s)	168
Cac8I	GCNNGC	1 cut(s)	1016
CciI	TCATGA	1 cut(s)	391
Cfr10I	RCCGGY	1 cut(s)	972
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	2 cut(s)	725, 836
Csp6I	GTAC	4 cut(s)	228, 674, 982, 1065
CspAI	ACCGGT	1 cut(s)	972
CviAII	CATG	3 cut(s)	392, 527, 830
CviQI	GTAC	4 cut(s)	228, 674, 982, 1065
DdeI	CTNAG	5 cut(s)	89, 670, 732, 755, 1003
DpnI	GATC	4 cut(s)	294, 459, 853, 945
DpnII	GATC	4 cut(s)	292, 457, 851, 943
Eam1104I	CTCTTC	5 cut(s)	50, 765, 897, 1004, 1145
EarI	CTCTTC	5 cut(s)	50, 765, 897, 1004, 1145
EciI	GGCGGA	1 cut(s)	535
Eco130I	CCWWGG	1 cut(s)	1125
Eco47I	GGWCC	1 cut(s)	4
Eco57I	CTGAAG	2 cut(s)	46, 633
EcoRII	CCWGG	3 cut(s)	449, 714, 907
EcoT14I	CCWWGG	1 cut(s)	1125
ErhI	CCWWGG	1 cut(s)	1125
FaeI	CATG	3 cut(s)	395, 530, 833
FalI	AAGNNNNNCTT	6 cut(s)	653, 685, 818, 850, 856, 888
FatI	CATG	3 cut(s)	391, 526, 829
FauNDI	CATATG	2 cut(s)	279, 1087
FblI	GTMKAC	1 cut(s)	892
Fnu4HI	GCNGC	1 cut(s)	723
FokI	GGATG	2 cut(s)	563, 1123
Fsp4HI	GCNGC	1 cut(s)	723
GluI	GCNGC	1 cut(s)	723
GsuI	CTGGAG	1 cut(s)	737
HapII	CCGG	1 cut(s)	973
HgaI	GACGC	2 cut(s)	725, 836
Hin1I	GRCGYC	1 cut(s)	847
Hin1II	CATG	3 cut(s)	395, 530, 833
HincII	GTYRAC	1 cut(s)	603
HindII	GTYRAC	1 cut(s)	603
HindIII	AAGCTT	1 cut(s)	870
HinfI	GANTC	1 cut(s)	685
HpaI	GTTAAC	1 cut(s)	603
HpaII	CCGG	1 cut(s)	973
HphI	GGTGA	2 cut(s)	11, 491
Hpy166II	GTNNAC	2 cut(s)	603, 893
Hpy188I	TCNGA	4 cut(s)	70, 598, 690, 1006
Hpy188III	TCNNGA	3 cut(s)	392, 410, 569
Hpy8I	GTNNAC	2 cut(s)	603, 893
Hpy99I	CGWCG	1 cut(s)	852
HpyAV	CCTTC	3 cut(s)	70, 753, 934
HpyCH4III	ACNGT	4 cut(s)	115, 163, 635, 1069
HpyCH4V	TGCA	3 cut(s)	218, 810, 1098
HpyF10VI	GCNNNNNNNGC	2 cut(s)	728, 1024
HpyF3I	CTNAG	5 cut(s)	89, 670, 732, 755, 1003
Hsp92I	GRCGYC	1 cut(s)	847
Hsp92II	CATG	3 cut(s)	395, 530, 833
KspAI	GTTAAC	1 cut(s)	603
Kzo9I	GATC	4 cut(s)	292, 457, 851, 943
LguI	GCTCTTC	2 cut(s)	897, 1004
LmnI	GCTCC	2 cut(s)	71, 271
Lsp1109I	GCAGC	1 cut(s)	709
LweI	GCATC	1 cut(s)	1107
MaeIII	GTNAC	3 cut(s)	157, 746, 793
MalI	GATC	4 cut(s)	294, 459, 853, 945
MboI	GATC	4 cut(s)	292, 457, 851, 943
MfeI	CAATTG	1 cut(s)	315
MflI	RGATCY	2 cut(s)	292, 457
MhlI	GDGCHC	2 cut(s)	450, 1039
MluCI	AATT	2 cut(s)	315, 416
MmeI	TCCRAC	2 cut(s)	93, 1036
MseI	TTAA	3 cut(s)	360, 602, 702
MslI	CAYNNNNRTG	1 cut(s)	393
MspA1I	CMGCKG	1 cut(s)	1108
MspI	CCGG	1 cut(s)	973
MspR9I	CCNGG	3 cut(s)	451, 716, 909
MunI	CAATTG	1 cut(s)	315
Mva1269I	GAATGC	1 cut(s)	86
MvaI	CCWGG	3 cut(s)	451, 716, 909
MwoI	GCNNNNNNNGC	2 cut(s)	728, 1024
NdeI	CATATG	2 cut(s)	279, 1087
NdeII	GATC	4 cut(s)	292, 457, 851, 943
NlaIII	CATG	3 cut(s)	395, 530, 833
NlaIV	GGNNCC	2 cut(s)	6, 483
NspI	RCATGY	1 cut(s)	530
NspV	TTCGAA	1 cut(s)	202
PagI	TCATGA	1 cut(s)	391
PciI	ACATGT	1 cut(s)	526
PciSI	GCTCTTC	2 cut(s)	897, 1004
PctI	GAATGC	1 cut(s)	86
PfeI	GAWTC	1 cut(s)	685
PinAI	ACCGGT	1 cut(s)	972
PkrI	GCNGC	1 cut(s)	724
PscI	ACATGT	1 cut(s)	526
PsiI	TTATAA	1 cut(s)	660
Psp6I	CCWGG	3 cut(s)	449, 714, 907
PspGI	CCWGG	3 cut(s)	449, 714, 907
PspN4I	GGNNCC	2 cut(s)	6, 483
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	2 cut(s)	292, 457
RsaI	GTAC	4 cut(s)	229, 675, 983, 1066
RsaNI	GTAC	4 cut(s)	228, 674, 982, 1065
RseI	CAYNNNNRTG	1 cut(s)	393
SapI	GCTCTTC	2 cut(s)	897, 1004
SaqAI	TTAA	3 cut(s)	360, 602, 702
SatI	GCNGC	1 cut(s)	723
Sau3AI	GATC	4 cut(s)	292, 457, 851, 943
Sau96I	GGNCC	1 cut(s)	4
ScaI	AGTACT	1 cut(s)	983
ScrFI	CCNGG	3 cut(s)	451, 716, 909
SduI	GDGCHC	2 cut(s)	450, 1039
SfaNI	GCATC	1 cut(s)	1107
SfcI	CTRYAG	1 cut(s)	896
SfuI	TTCGAA	1 cut(s)	202
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	1 cut(s)	393
Sse9I	AATT	2 cut(s)	315, 416
SsiI	CCGC	2 cut(s)	520, 1108
SspI	AATATT	2 cut(s)	384, 814
StyD4I	CCNGG	3 cut(s)	449, 714, 907
StyI	CCWWGG	1 cut(s)	1125
TaaI	ACNGT	4 cut(s)	115, 163, 635, 1069
TaqI	TCGA	3 cut(s)	202, 256, 850
TasI	AATT	2 cut(s)	315, 416
TatI	WGTACW	1 cut(s)	981
TfiI	GAWTC	1 cut(s)	685
Tru1I	TTAA	3 cut(s)	360, 602, 702
Tru9I	TTAA	3 cut(s)	360, 602, 702
TscAI	CASTG	1 cut(s)	168
TseI	GCWGC	1 cut(s)	722
TspDTI	ATGAA	6 cut(s)	377, 411, 429, 639, 1092, 1163
TspGWI	ACGGA	4 cut(s)	92, 258, 297, 866
TspRI	CASTG	1 cut(s)	168
VpaK11BI	GGWCC	1 cut(s)	4
XceI	RCATGY	1 cut(s)	530
XmiI	GTMKAC	1 cut(s)	892
ZrmI	AGTACT	1 cut(s)	983

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.