Ribosomal protein S1-like RNA-binding domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G48500 AT3G48500 |
| fragaria_vesca | FvH4_5g07670 FvH4_5g07670 FvH4_5g07670 |
| malus_domestica | MD14G1162400.v1.1 |
| prunus_persica | Prupe.5G155500_v2.0.a1 |
| pyrus_communis | pycom14g13530 |
| rosa_chinensis | RchiOBHm_Chr1g0380381 RchiOBHm_Chr7g0190801 |
| rosa_laevigata | RLG00000004495 RLG00000004556 RLG00000026308 |
| rosa_multiflora | Rmu_sc0002819.1_g000003 Rmu_sc0003249.1_g000020 |
| rosa_roxburghii | Rroxscaffold_3G00264290 Rroxscaffold_4G00279440 |
| rosa_rugosa | Rorug04G0085500 Rorug06G0507200 |
| rosa_samantha | Rh1CG414500 Rh4AG090600 Rh4BG147500 Rh4CG098900 Rh7AG113800 Rh7BG116400 Rh7CG119100 Rh7DG117700 |
| rosa_wichuraiana | Rw1G038700 Rw7G009930 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 120 |
| AccI | GTMKAC | 1 cut(s) | 370 |
| AclWI | GGATC | 1 cut(s) | 429 |
| AcsI | RAATTY | 1 cut(s) | 756 |
| AcuI | CTGAAG | 1 cut(s) | 93 |
| AcyI | GRCGYC | 1 cut(s) | 307 |
| AfaI | GTAC | 2 cut(s) | 135, 544 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 264 |
| AgeI | ACCGGT | 1 cut(s) | 450 |
| AgsI | TTSAA | 4 cut(s) | 82, 101, 691, 700 |
| AjnI | CCWGG | 3 cut(s) | 174, 385, 751 |
| AluBI | AGCT | 7 cut(s) | 52, 202, 332, 351, 362, 408, 527 |
| AluI | AGCT | 7 cut(s) | 52, 202, 332, 351, 362, 408, 527 |
| AlwI | GGATC | 1 cut(s) | 429 |
| ApeKI | GCWGC | 3 cut(s) | 182, 351, 724 |
| ApoI | RAATTY | 1 cut(s) | 756 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 395, 427 |
| AsiGI | ACCGGT | 1 cut(s) | 450 |
| AspLEI | GCGC | 1 cut(s) | 270 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 117, 150 |
| BbsI | GAAGAC | 1 cut(s) | 408 |
| BbvI | GCAGC | 3 cut(s) | 169, 338, 736 |
| BccI | CCATC | 2 cut(s) | 274, 583 |
| BceAI | ACGGC | 2 cut(s) | 339, 518 |
| BciT130I | CCWGG | 3 cut(s) | 176, 387, 753 |
| BclI | TGATCA | 1 cut(s) | 336 |
| BisI | GCNGC | 3 cut(s) | 183, 352, 725 |
| BlpI | GCTNAGC | 1 cut(s) | 192 |
| BlsI | GCNGC | 3 cut(s) | 184, 353, 726 |
| Bme1390I | CCNGG | 3 cut(s) | 176, 387, 753 |
| BmrFI | CCNGG | 3 cut(s) | 176, 387, 753 |
| BmrI | ACTGGG | 1 cut(s) | 472 |
| BmsI | GCATC | 2 cut(s) | 502, 585 |
| BmuI | ACTGGG | 1 cut(s) | 472 |
| BpiI | GAAGAC | 1 cut(s) | 408 |
| BpmI | CTGGAG | 1 cut(s) | 197 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 192 |
| BsaHI | GRCGYC | 1 cut(s) | 307 |
| BsaJI | CCNNGG | 2 cut(s) | 386, 603 |
| BsaWI | WCCGGW | 2 cut(s) | 376, 450 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 733, 763 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 264 |
| Bse118I | RCCGGY | 1 cut(s) | 450 |
| Bse1I | ACTGG | 1 cut(s) | 467 |
| BseBI | CCWGG | 3 cut(s) | 176, 387, 753 |
| BseDI | CCNNGG | 2 cut(s) | 386, 603 |
| BseGI | GGATG | 1 cut(s) | 16 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 264 |
| BseMII | CTCAG | 2 cut(s) | 183, 495 |
| BseNI | ACTGG | 1 cut(s) | 467 |
| BseRI | GAGGAG | 2 cut(s) | 252, 644 |
| BseXI | GCAGC | 3 cut(s) | 169, 338, 736 |
| BshTI | ACCGGT | 1 cut(s) | 450 |
| BsiSI | CCGG | 2 cut(s) | 377, 451 |
| BslFI | GGGAC | 1 cut(s) | 754 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 264 |
| BsmFI | GGGAC | 1 cut(s) | 754 |
| Bsp143I | GATC | 3 cut(s) | 311, 336, 421 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 192 |
| BspCNI | CTCAG | 2 cut(s) | 184, 494 |
| BspPI | GGATC | 1 cut(s) | 429 |
| BspQI | GCTCTTC | 2 cut(s) | 375, 482 |
| BsrFI | RCCGGY | 1 cut(s) | 450 |
| BsrI | ACTGG | 1 cut(s) | 467 |
| BssAI | RCCGGY | 1 cut(s) | 450 |
| BssECI | CCNNGG | 2 cut(s) | 386, 603 |
| BssMI | GATC | 3 cut(s) | 311, 336, 421 |
| BssNI | GRCGYC | 1 cut(s) | 307 |
| BssT1I | CCWWGG | 1 cut(s) | 603 |
| Bst2UI | CCWGG | 3 cut(s) | 176, 387, 753 |
| Bst4CI | ACNGT | 3 cut(s) | 95, 547, 709 |
| Bst6I | CTCTTC | 3 cut(s) | 225, 375, 482 |
| BstACI | GRCGYC | 1 cut(s) | 307 |
| BstC8I | GCNNGC | 1 cut(s) | 494 |
| BstDEI | CTNAG | 4 cut(s) | 130, 192, 215, 481 |
| BstF5I | GGATG | 1 cut(s) | 16 |
| BstHHI | GCGC | 1 cut(s) | 270 |
| BstKTI | GATC | 3 cut(s) | 314, 339, 424 |
| BstMBI | GATC | 3 cut(s) | 311, 336, 421 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 188, 502 |
| BstNI | CCWGG | 3 cut(s) | 176, 387, 753 |
| BstNSI | RCATGY | 1 cut(s) | 775 |
| BstSCI | CCNGG | 3 cut(s) | 174, 385, 751 |
| BstV1I | GCAGC | 3 cut(s) | 169, 338, 736 |
| BstV2I | GAAGAC | 1 cut(s) | 408 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 737 |
| BtsCI | GGATG | 1 cut(s) | 16 |
| Cac8I | GCNNGC | 1 cut(s) | 494 |
| CfoI | GCGC | 1 cut(s) | 270 |
| Cfr10I | RCCGGY | 1 cut(s) | 450 |
| CseI | GACGC | 2 cut(s) | 185, 296 |
| Csp6I | GTAC | 2 cut(s) | 134, 543 |
| CspAI | ACCGGT | 1 cut(s) | 450 |
| CviAII | CATG | 2 cut(s) | 731, 772 |
| CviQI | GTAC | 2 cut(s) | 134, 543 |
| DdeI | CTNAG | 4 cut(s) | 130, 192, 215, 481 |
| DpnI | GATC | 3 cut(s) | 313, 338, 423 |
| DpnII | GATC | 3 cut(s) | 311, 336, 421 |
| Eam1104I | CTCTTC | 3 cut(s) | 225, 375, 482 |
| EarI | CTCTTC | 3 cut(s) | 225, 375, 482 |
| Eco130I | CCWWGG | 1 cut(s) | 603 |
| Eco57I | CTGAAG | 1 cut(s) | 93 |
| EcoRII | CCWGG | 3 cut(s) | 174, 385, 751 |
| EcoT14I | CCWWGG | 1 cut(s) | 603 |
| ErhI | CCWWGG | 1 cut(s) | 603 |
| FaeI | CATG | 2 cut(s) | 734, 775 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 113, 145, 316, 348 |
| FaqI | GGGAC | 1 cut(s) | 754 |
| FatI | CATG | 2 cut(s) | 730, 771 |
| FauNDI | CATATG | 1 cut(s) | 565 |
| FbaI | TGATCA | 1 cut(s) | 336 |
| FblI | GTMKAC | 1 cut(s) | 370 |
| Fnu4HI | GCNGC | 3 cut(s) | 183, 352, 725 |
| FokI | GGATG | 1 cut(s) | 23 |
| Fsp4HI | GCNGC | 3 cut(s) | 183, 352, 725 |
| GlaI | GCGC | 1 cut(s) | 269 |
| GluI | GCNGC | 3 cut(s) | 183, 352, 725 |
| GsuI | CTGGAG | 1 cut(s) | 197 |
| HapII | CCGG | 2 cut(s) | 377, 451 |
| HgaI | GACGC | 2 cut(s) | 185, 296 |
| HhaI | GCGC | 1 cut(s) | 270 |
| Hin1I | GRCGYC | 1 cut(s) | 307 |
| Hin1II | CATG | 2 cut(s) | 734, 775 |
| Hin6I | GCGC | 1 cut(s) | 268 |
| HinP1I | GCGC | 1 cut(s) | 268 |
| HincII | GTYRAC | 1 cut(s) | 63 |
| HindII | GTYRAC | 1 cut(s) | 63 |
| HindIII | AAGCTT | 1 cut(s) | 330 |
| HinfI | GANTC | 2 cut(s) | 145, 746 |
| HpaI | GTTAAC | 1 cut(s) | 63 |
| HpaII | CCGG | 2 cut(s) | 377, 451 |
| Hpy166II | GTNNAC | 2 cut(s) | 63, 371 |
| Hpy188I | TCNGA | 4 cut(s) | 58, 150, 484, 763 |
| Hpy188III | TCNNGA | 2 cut(s) | 29, 697 |
| Hpy8I | GTNNAC | 2 cut(s) | 63, 371 |
| Hpy99I | CGWCG | 1 cut(s) | 312 |
| HpyAV | CCTTC | 2 cut(s) | 213, 412 |
| HpyCH4III | ACNGT | 3 cut(s) | 95, 547, 709 |
| HpyCH4V | TGCA | 1 cut(s) | 576 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 188, 502 |
| HpyF3I | CTNAG | 4 cut(s) | 130, 192, 215, 481 |
| Hsp92I | GRCGYC | 1 cut(s) | 307 |
| Hsp92II | CATG | 2 cut(s) | 734, 775 |
| HspAI | GCGC | 1 cut(s) | 268 |
| Ksp22I | TGATCA | 1 cut(s) | 336 |
| KspAI | GTTAAC | 1 cut(s) | 63 |
| Kzo9I | GATC | 3 cut(s) | 311, 336, 421 |
| LguI | GCTCTTC | 2 cut(s) | 375, 482 |
| Lsp1109I | GCAGC | 3 cut(s) | 169, 338, 736 |
| LweI | GCATC | 2 cut(s) | 502, 585 |
| MaeIII | GTNAC | 2 cut(s) | 206, 253 |
| MalI | GATC | 3 cut(s) | 313, 338, 423 |
| MboI | GATC | 3 cut(s) | 311, 336, 421 |
| MboII | GAAGA | 8 cut(s) | 86, 98, 242, 392, 413, 499, 647, 674 |
| MluCI | AATT | 1 cut(s) | 756 |
| MmeI | TCCRAC | 1 cut(s) | 514 |
| MseI | TTAA | 4 cut(s) | 62, 162, 735, 784 |
| MslI | CAYNNNNRTG | 1 cut(s) | 735 |
| MspI | CCGG | 2 cut(s) | 377, 451 |
| MspR9I | CCNGG | 3 cut(s) | 176, 387, 753 |
| MvaI | CCWGG | 3 cut(s) | 176, 387, 753 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 188, 502 |
| NdeI | CATATG | 1 cut(s) | 565 |
| NdeII | GATC | 3 cut(s) | 311, 336, 421 |
| NlaIII | CATG | 2 cut(s) | 734, 775 |
| NspI | RCATGY | 1 cut(s) | 775 |
| PciSI | GCTCTTC | 2 cut(s) | 375, 482 |
| PfeI | GAWTC | 2 cut(s) | 145, 746 |
| PfoI | TCCNGGA | 1 cut(s) | 751 |
| PinAI | ACCGGT | 1 cut(s) | 450 |
| PkrI | GCNGC | 3 cut(s) | 184, 353, 726 |
| PsiI | TTATAA | 1 cut(s) | 120 |
| Psp6I | CCWGG | 3 cut(s) | 174, 385, 751 |
| PspGI | CCWGG | 3 cut(s) | 174, 385, 751 |
| RsaI | GTAC | 2 cut(s) | 135, 544 |
| RsaNI | GTAC | 2 cut(s) | 134, 543 |
| RseI | CAYNNNNRTG | 1 cut(s) | 735 |
| SapI | GCTCTTC | 2 cut(s) | 375, 482 |
| SaqAI | TTAA | 4 cut(s) | 62, 162, 735, 784 |
| SatI | GCNGC | 3 cut(s) | 183, 352, 725 |
| Sau3AI | GATC | 3 cut(s) | 311, 336, 421 |
| ScrFI | CCNGG | 3 cut(s) | 176, 387, 753 |
| SfaNI | GCATC | 2 cut(s) | 502, 585 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 735 |
| Sse9I | AATT | 1 cut(s) | 756 |
| SspI | AATATT | 1 cut(s) | 274 |
| StyD4I | CCNGG | 3 cut(s) | 174, 385, 751 |
| StyI | CCWWGG | 1 cut(s) | 603 |
| TaaI | ACNGT | 3 cut(s) | 95, 547, 709 |
| TaqI | TCGA | 1 cut(s) | 310 |
| TasI | AATT | 1 cut(s) | 756 |
| TfiI | GAWTC | 2 cut(s) | 145, 746 |
| Tru1I | TTAA | 4 cut(s) | 62, 162, 735, 784 |
| Tru9I | TTAA | 4 cut(s) | 62, 162, 735, 784 |
| TseI | GCWGC | 3 cut(s) | 182, 351, 724 |
| TspDTI | ATGAA | 4 cut(s) | 99, 570, 675, 717 |
| XapI | RAATTY | 1 cut(s) | 756 |
| XceI | RCATGY | 1 cut(s) | 775 |
| XmiI | GTMKAC | 1 cut(s) | 370 |