Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002808

Physical Location & Seq

Genomic Coordinates Forward (+)

11270498 .. 11273338

Gene Structure 2841 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47368

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGATATTGTTGAATCTATACAAGATCTTCCAGTTCAGGATCCACCAGCGGAGGAGTTCTCCTCTGCTGATTTGACTTGGACCAAATTTGGCAGTTCCGAGAATCATGATGATGCAGCCCTCATTCCTTATGACCGAGTAGACGAATTTATAATCGGTGAATGCTCAAATTTAGAGTGTCCAACGCGATTTCATATTGAGAGGGGAAGAAAAAGAAAGAAGGGCTGCTTAAAGGAGTACGCTGATGATGAGTATTTGGAATATAAGCTGTATTGGTGTTCTTTTGGTCCTGAAAATTATGGGGAAGGTGGGGGTATTCTACCTAGCAGAAGATATCGACTCAACACCCGCAATCGCGCTGCTAGACCTCAATCTATGCGGGGCTGTACATGCAATTTTGTGGTGAAGCGTCTCTATGCACGTCCATCACTTGCACTACTTATCTATCATCAGAGGCGTCATGTGAACAAATCTGGTTTTGTTTGCCATGGCCCACTTGATGGAGATGCCATTGGCCCCGGAGCCAAGACAGTTCCATATATCTGTAATGAGATTCAACAACAAACAATGTCTATGATCTATCTGGGTGTTCCTGAAGAGAATATACTAGAAAAACACATTGAGGGGATTGAGCGATATTGTGCTTCAAATGCAAAAGTCAATAGCCTTGCTTCCCAGTATGTCCACAAACTTGGGATGATTATCCAAAGGTCTACCCATGAATTGGATCTTGATGATCAAGCCAGCATCCGCATGTGGGTTGAGCGCAATAAGAAATCCATATTCATTCATCAGGATACTTCAGAAACTGATCCTTTCATTCTGGGGATTCAGACAGAGTGGCAACTGCAACAATTGATACGTTTTGGCCATCGCAGTCTCATTGCAATTGATTCAACATTTGGCATAAAGAGACTTAAGGATCCGCTGCCAGAAGTAATTGTCATAATGAACAAGTCAAACTCTTGTGTGTCTATCTTGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

328

Amino Acids

37.52

Weight (kDa)

6.38

Isoelectric Point (pI)

58.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60560 AT1G60560 AT1G60560
fragaria_vesca	FvH4_1g11391
malus_domestica	MD14G1040800.v1.1
prunus_persica	Prupe.7G172200_v2.0.a1
pyrus_communis	pycom14g03460
rosa_chinensis	RchiOBHm_Chr2g0098931 RchiOBHm_Chr2g0098941 RchiOBHm_Chr4g0406971 RchiOBHm_Chr7g0185761 RchiOBHm_Chr7g0219821
rosa_laevigata	RLG00000016835 RLG00000036043 RLG00000036045
rosa_multiflora	Rmu_sc0000600.1_g000016 Rmu_sc0000936.1_g000018 Rmu_sc0000936.1_g000019 Rmu_sc0007649.1_g000004 Rmu_sc0009833.1_g000012 Rmu_sc0027115.1_g000002
rosa_roxburghii	Rroxscaffold_1G00011620 Rroxscaffold_2G00143560
rosa_rugosa	Rorug03G0254100 Rorug03G0293700 Rorug04G0076000 Rorug04G0076100 Rorug04G0076200
rosa_samantha	Rh4AG141800 Rh4BG138900 Rh4DG135900 Rh5AG453500 Rh5AG453600 Rh5DG485000 Rh7DG249200
rosa_wichuraiana	Rw0G006010 Rw2G009560 Rw4G011550 Rw5G042350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	152
AccB7I	CCANNNNNTGG	2 cut(s)	500, 724
AccI	GTMKAC	2 cut(s)	141, 713
AccII	CGCG	2 cut(s)	187, 357
AciI	CCGC	5 cut(s)	50, 349, 379, 751, 926
AclWI	GGATC	6 cut(s)	35, 48, 735, 806, 917, 930
AcoI	YGGCCR	1 cut(s)	868
AcsI	RAATTY	3 cut(s)	86, 146, 169
AcuI	CTGAAG	2 cut(s)	615, 786
AcyI	GRCGYC	1 cut(s)	457
AfaI	GTAC	2 cut(s)	239, 388
AfiI	CCNNNNNNNGG	3 cut(s)	500, 724, 757
AflII	CTTAAG	1 cut(s)	917
AgsI	TTSAA	4 cut(s)	14, 557, 648, 897
AjiI	CACGTC	1 cut(s)	422
AluBI	AGCT	1 cut(s)	268
AluI	AGCT	1 cut(s)	268
Alw26I	GTCTC	3 cut(s)	416, 884, 907
AlwI	GGATC	6 cut(s)	35, 48, 735, 806, 917, 930
AlwNI	CAGNNNCTG	1 cut(s)	809
AoxI	GGCC	3 cut(s)	490, 514, 868
ApeKI	GCWGC	4 cut(s)	116, 225, 359, 928
ApoI	RAATTY	3 cut(s)	86, 146, 169
AspLEI	GCGC	2 cut(s)	359, 768
AspS9I	GGNCC	4 cut(s)	81, 287, 491, 515
AsuC2I	CCSGG	1 cut(s)	519
AsuHPI	GGTGA	2 cut(s)	170, 415
AvaII	GGWCC	2 cut(s)	81, 287
BalI	TGGCCA	1 cut(s)	870
BamHI	GGATCC	2 cut(s)	40, 922
BarI	GAAGNNNNNNTAC	2 cut(s)	588, 620
BbvI	GCAGC	4 cut(s)	128, 212, 346, 915
BccI	CCATC	3 cut(s)	433, 494, 879
BciVI	GTATCC	1 cut(s)	790
BclI	TGATCA	1 cut(s)	736
BcnI	CCSGG	1 cut(s)	519
BcoDI	GTCTC	3 cut(s)	416, 884, 907
BfaI	CTAG	3 cut(s)	324, 363, 608
BfrI	CTTAAG	1 cut(s)	917
BfuI	GTATCC	1 cut(s)	790
BglII	AGATCT	1 cut(s)	25
BisI	GCNGC	4 cut(s)	117, 226, 360, 929
BlsI	GCNGC	4 cut(s)	118, 227, 361, 930
Bme1390I	CCNGG	1 cut(s)	519
Bme18I	GGWCC	2 cut(s)	81, 287
BmgBI	CACGTC	1 cut(s)	422
BmgT120I	GGNCC	4 cut(s)	81, 287, 491, 515
BmiI	GGNNCC	4 cut(s)	42, 517, 523, 924
BmrFI	CCNGG	1 cut(s)	519
BmrI	ACTGGG	1 cut(s)	670
BmsI	GCATC	3 cut(s)	103, 496, 756
BmuI	ACTGGG	1 cut(s)	670
BplI	GAGNNNNNCTC	4 cut(s)	44, 76, 47, 79
BpuMI	CCSGG	1 cut(s)	519
BsaBI	GATNNNNATC	1 cut(s)	701
BsaHI	GRCGYC	1 cut(s)	457
BsaJI	CCNNGG	2 cut(s)	487, 517
Bsc4I	CCNNNNNNNGG	3 cut(s)	500, 724, 757
Bse1I	ACTGG	2 cut(s)	32, 676
Bse3DI	GCAATG	1 cut(s)	882
Bse8I	GATNNNNATC	1 cut(s)	701
BseDI	CCNNGG	2 cut(s)	487, 517
BseGI	GGATG	2 cut(s)	702, 747
BseJI	GATNNNNATC	1 cut(s)	701
BseLI	CCNNNNNNNGG	3 cut(s)	500, 724, 757
BseMI	GCAATG	1 cut(s)	882
BseNI	ACTGG	2 cut(s)	32, 676
BseRI	GAGGAG	2 cut(s)	52, 68
BseXI	GCAGC	4 cut(s)	128, 212, 346, 915
Bsh1236I	CGCG	2 cut(s)	187, 357
BshFI	GGCC	3 cut(s)	492, 516, 870
BsiSI	CCGG	1 cut(s)	519
BslI	CCNNNNNNNGG	3 cut(s)	500, 724, 757
BsmAI	GTCTC	3 cut(s)	416, 884, 907
BsmBI	CGTCTC	1 cut(s)	416
BsmI	GAATGC	1 cut(s)	167
BsnI	GGCC	3 cut(s)	492, 516, 870
Bsp1407I	TGTACA	1 cut(s)	386
Bsp143I	GATC	7 cut(s)	25, 40, 576, 727, 736, 811, 922
Bsp19I	CCATGG	1 cut(s)	487
BspACI	CCGC	5 cut(s)	50, 349, 379, 751, 926
BspANI	GGCC	3 cut(s)	492, 516, 870
BspFNI	CGCG	2 cut(s)	187, 357
BspHI	TCATGA	1 cut(s)	106
BspLI	GGNNCC	4 cut(s)	42, 517, 523, 924
BspPI	GGATC	6 cut(s)	35, 48, 735, 806, 917, 930
BspTI	CTTAAG	1 cut(s)	917
BsrDI	GCAATG	1 cut(s)	882
BsrGI	TGTACA	1 cut(s)	386
BsrI	ACTGG	2 cut(s)	32, 676
BssECI	CCNNGG	2 cut(s)	487, 517
BssMI	GATC	7 cut(s)	25, 40, 576, 727, 736, 811, 922
BssNI	GRCGYC	1 cut(s)	457
BssT1I	CCWWGG	1 cut(s)	487
Bst4CI	ACNGT	1 cut(s)	532
Bst6I	CTCTTC	1 cut(s)	591
BstACI	GRCGYC	1 cut(s)	457
BstAFI	CTTAAG	1 cut(s)	917
BstAUI	TGTACA	1 cut(s)	386
BstC8I	GCNNGC	1 cut(s)	745
BstDSI	CCRYGG	1 cut(s)	487
BstF5I	GGATG	2 cut(s)	702, 747
BstFNI	CGCG	2 cut(s)	187, 357
BstHHI	GCGC	2 cut(s)	359, 768
BstKTI	GATC	7 cut(s)	28, 43, 579, 730, 739, 814, 925
BstMAI	GTCTC	3 cut(s)	416, 884, 907
BstMBI	GATC	7 cut(s)	25, 40, 576, 727, 736, 811, 922
BstMWI	GCNNNNNNNGC	2 cut(s)	390, 650
BstNSI	RCATGY	2 cut(s)	393, 757
BstSCI	CCNGG	1 cut(s)	517
BstUI	CGCG	2 cut(s)	187, 357
BstV1I	GCAGC	4 cut(s)	128, 212, 346, 915
BstX2I	RGATCY	4 cut(s)	25, 40, 727, 922
BstXI	CCANNNNNNTGG	1 cut(s)	692
BstYI	RGATCY	4 cut(s)	25, 40, 727, 922
BsuI	GTATCC	1 cut(s)	790
BsuRI	GGCC	3 cut(s)	492, 516, 870
BtgI	CCRYGG	1 cut(s)	487
BtgZI	GCGATG	1 cut(s)	857
BtrI	CACGTC	1 cut(s)	422
BtsCI	GGATG	2 cut(s)	702, 747
Cac8I	GCNNGC	1 cut(s)	745
CaiI	CAGNNNCTG	1 cut(s)	809
CciI	TCATGA	1 cut(s)	106
CfoI	GCGC	2 cut(s)	359, 768
Cfr13I	GGNCC	4 cut(s)	81, 287, 491, 515
CseI	GACGC	2 cut(s)	398, 446
Csp6I	GTAC	2 cut(s)	238, 387
CviAII	CATG	6 cut(s)	107, 390, 461, 488, 719, 754
CviQI	GTAC	2 cut(s)	238, 387
DpnI	GATC	7 cut(s)	27, 42, 578, 729, 738, 813, 924
DpnII	GATC	7 cut(s)	25, 40, 576, 727, 736, 811, 922
EaeI	YGGCCR	1 cut(s)	868
Eam1104I	CTCTTC	1 cut(s)	591
EarI	CTCTTC	1 cut(s)	591
Eco130I	CCWWGG	1 cut(s)	487
Eco32I	GATATC	1 cut(s)	335
Eco47I	GGWCC	2 cut(s)	81, 287
Eco57I	CTGAAG	2 cut(s)	615, 786
EcoRV	GATATC	1 cut(s)	335
EcoT14I	CCWWGG	1 cut(s)	487
ErhI	CCWWGG	1 cut(s)	487
Esp3I	CGTCTC	1 cut(s)	416
FaeI	CATG	6 cut(s)	110, 393, 464, 491, 722, 757
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FatI	CATG	6 cut(s)	106, 389, 460, 487, 718, 753
FauI	CCCGC	2 cut(s)	356, 372
FbaI	TGATCA	1 cut(s)	736
FblI	GTMKAC	2 cut(s)	141, 713
Fnu4HI	GCNGC	4 cut(s)	117, 226, 360, 929
FokI	GGATG	2 cut(s)	709, 734
Fsp4HI	GCNGC	4 cut(s)	117, 226, 360, 929
FspBI	CTAG	3 cut(s)	324, 363, 608
GlaI	GCGC	2 cut(s)	358, 767
GluI	GCNGC	4 cut(s)	117, 226, 360, 929
HaeIII	GGCC	3 cut(s)	492, 516, 870
HapII	CCGG	1 cut(s)	519
HgaI	GACGC	2 cut(s)	398, 446
HhaI	GCGC	2 cut(s)	359, 768
Hin1I	GRCGYC	1 cut(s)	457
Hin1II	CATG	6 cut(s)	110, 393, 464, 491, 722, 757
Hin6I	GCGC	2 cut(s)	357, 766
HinP1I	GCGC	2 cut(s)	357, 766
HinfI	GANTC	6 cut(s)	14, 103, 339, 553, 829, 893
HpaII	CCGG	1 cut(s)	519
HphI	GGTGA	2 cut(s)	170, 415
Hpy166II	GTNNAC	4 cut(s)	142, 466, 685, 714
Hpy188I	TCNGA	4 cut(s)	100, 453, 805, 834
Hpy188III	TCNNGA	6 cut(s)	38, 107, 290, 593, 731, 794
Hpy8I	GTNNAC	4 cut(s)	142, 466, 685, 714
HpyAV	CCTTC	2 cut(s)	214, 299
HpyCH4III	ACNGT	1 cut(s)	532
HpyCH4IV	ACGT	2 cut(s)	421, 862
HpyCH4V	TGCA	7 cut(s)	116, 393, 419, 434, 653, 850, 887
HpyF10VI	GCNNNNNNNGC	2 cut(s)	390, 650
HpySE526I	ACGT	2 cut(s)	421, 862
Hsp92I	GRCGYC	1 cut(s)	457
Hsp92II	CATG	6 cut(s)	110, 393, 464, 491, 722, 757
HspAI	GCGC	2 cut(s)	357, 766
Ksp22I	TGATCA	1 cut(s)	736
Kzo9I	GATC	7 cut(s)	25, 40, 576, 727, 736, 811, 922
LmnI	GCTCC	1 cut(s)	521
Lsp1109I	GCAGC	4 cut(s)	128, 212, 346, 915
LweI	GCATC	3 cut(s)	103, 496, 756
MaeI	CTAG	3 cut(s)	324, 363, 608
MaeII	ACGT	2 cut(s)	421, 862
MalI	GATC	7 cut(s)	27, 42, 578, 729, 738, 813, 924
MboI	GATC	7 cut(s)	25, 40, 576, 727, 736, 811, 922
MboII	GAAGA	4 cut(s)	20, 219, 342, 608
MfeI	CAATTG	2 cut(s)	854, 888
MflI	RGATCY	4 cut(s)	25, 40, 727, 922
MlsI	TGGCCA	1 cut(s)	870
MluCI	AATT	9 cut(s)	86, 146, 169, 295, 394, 722, 854, 888, 939
MluNI	TGGCCA	1 cut(s)	870
MlyI	GAGTC	1 cut(s)	333
MmeI	TCCRAC	1 cut(s)	206
MnlI	CCTC	7 cut(s)	46, 73, 131, 195, 378, 447, 616
Mox20I	TGGCCA	1 cut(s)	870
MscI	TGGCCA	1 cut(s)	870
MseI	TTAA	2 cut(s)	230, 918
MslI	CAYNNNNRTG	2 cut(s)	111, 752
Msp20I	TGGCCA	1 cut(s)	870
MspA1I	CMGCKG	2 cut(s)	50, 928
MspCI	CTTAAG	1 cut(s)	917
MspI	CCGG	1 cut(s)	519
MspR9I	CCNGG	1 cut(s)	519
MunI	CAATTG	2 cut(s)	854, 888
Mva1269I	GAATGC	1 cut(s)	167
MvnI	CGCG	2 cut(s)	187, 357
MwoI	GCNNNNNNNGC	2 cut(s)	390, 650
NciI	CCSGG	1 cut(s)	519
NcoI	CCATGG	1 cut(s)	487
NdeII	GATC	7 cut(s)	25, 40, 576, 727, 736, 811, 922
NlaIII	CATG	6 cut(s)	110, 393, 464, 491, 722, 757
NlaIV	GGNNCC	4 cut(s)	42, 517, 523, 924
NspI	RCATGY	2 cut(s)	393, 757
PagI	TCATGA	1 cut(s)	106
PctI	GAATGC	1 cut(s)	167
PfeI	GAWTC	5 cut(s)	14, 103, 553, 829, 893
PflMI	CCANNNNNTGG	2 cut(s)	500, 724
PkrI	GCNGC	4 cut(s)	118, 227, 361, 930
PleI	GAGTC	1 cut(s)	333
PpsI	GAGTC	1 cut(s)	333
PsiI	TTATAA	1 cut(s)	152
PspN4I	GGNNCC	4 cut(s)	42, 517, 523, 924
PspPI	GGNCC	4 cut(s)	81, 287, 491, 515
PstNI	CAGNNNCTG	1 cut(s)	809
PsuI	RGATCY	4 cut(s)	25, 40, 727, 922
RsaI	GTAC	2 cut(s)	239, 388
RsaNI	GTAC	2 cut(s)	238, 387
RseI	CAYNNNNRTG	2 cut(s)	111, 752
SaqAI	TTAA	2 cut(s)	230, 918
SatI	GCNGC	4 cut(s)	117, 226, 360, 929
Sau3AI	GATC	7 cut(s)	25, 40, 576, 727, 736, 811, 922
Sau96I	GGNCC	4 cut(s)	81, 287, 491, 515
SchI	GAGTC	1 cut(s)	333
ScrFI	CCNGG	1 cut(s)	519
SetI	ASST	7 cut(s)	270, 310, 325, 370, 424, 713, 865
SfaNI	GCATC	3 cut(s)	103, 496, 756
SinI	GGWCC	2 cut(s)	81, 287
SmiMI	CAYNNNNRTG	2 cut(s)	111, 752
SmlI	CTYRAG	1 cut(s)	917
SmoI	CTYRAG	1 cut(s)	917
Sse9I	AATT	9 cut(s)	86, 146, 169, 295, 394, 722, 854, 888, 939
SsiI	CCGC	5 cut(s)	50, 349, 379, 751, 926
SspMI	CTAG	3 cut(s)	324, 363, 608
StyD4I	CCNGG	1 cut(s)	517
StyI	CCWWGG	1 cut(s)	487
TaaI	ACNGT	1 cut(s)	532
TaiI	ACGT	2 cut(s)	424, 865
TaqI	TCGA	1 cut(s)	337
TaqII	GACCGA	1 cut(s)	150
TasI	AATT	9 cut(s)	86, 146, 169, 295, 394, 722, 854, 888, 939
TatI	WGTACW	1 cut(s)	386
TfiI	GAWTC	5 cut(s)	14, 103, 553, 829, 893
Tru1I	TTAA	2 cut(s)	230, 918
Tru9I	TTAA	2 cut(s)	230, 918
TseI	GCWGC	4 cut(s)	116, 225, 359, 928
TspDTI	ATGAA	6 cut(s)	182, 735, 775, 779, 808, 965
Van91I	CCANNNNNTGG	2 cut(s)	500, 724
Vha464I	CTTAAG	1 cut(s)	917
VpaK11BI	GGWCC	2 cut(s)	81, 287
XapI	RAATTY	3 cut(s)	86, 146, 169
XceI	RCATGY	2 cut(s)	393, 757
XmiI	GTMKAC	2 cut(s)	141, 713
XspI	CTAG	3 cut(s)	324, 363, 608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.