Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002808

Physical Location & Seq

Genomic Coordinates Forward (+)

11273340 .. 11275014

Gene Structure 1675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47369

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGACAGCCCTACTTGGTCGAGCTCGTAGTGTTGAGCCTGGATGGAGGGCCAGTGGGTTTTTAATTGATGATGCAGCAGCTGAGACTGATCCCATCAGGGATATTTTTGGTTGTCCTGTCCTATTTTCCCTCTGGCGTGTTCGAAGATCATGGCTGAGGAATATTGTAAAGAAATGCAATAACATTGAAGTTCAACGGGAACTTTTTAAACGTCTGGGTAATATTGTGCATGGCATTTGGGGTGCAAGTGATACAGCGGTTGCCTTAGAACAACTTACCCAGGATTTTGTTGATCAGACTGCTTTTATGGAATATTTTAAAAGTCATTGGGTGCCTAAGATTGAAATGTGGCTTTCAACAATGAGAAGTCTTCCGCTTGCAAGTCAGGAGGCATCTGGTGCTATTGAAGCATATCACGTGAAGTTGAAAGTGAAATTGTTTGATGATTCACATCTTGGAGCACTCCGAAGAGTTGATTGGTTAGTGCACAAACTGACAACTGAGCTGCACTCAGGCTACTGGCTCGACCGATATGCTGATGAATGTGATTCTTTTCAAAACGTCAAGGAAGAATATATTGCTTCTACATCTTGGCACAGAGCACTGCAAATTCCTGATTCTGCTGTTACCTTGGATGATAAAAACCGTCTCTTTGCCAAGGTTTCAAGCCAGAAAGACAGTAGCATTGTACATCTAGTGTGGAATCCCGGATCAGAATTTTCCTTTTGTGACTGTGTGTGGTCGATGCAAGGAAACGTTTGCAAGCATGTCATCAAAGTCAATATGATCTGTGAAAGTCATCAAGGTTATCAACCTTCCATGTCTTTCCAGTCATTCAAAGAGTTGCTCGTCAGCCTATCAAAGAAACCAATGGAGGATTCAATTTCACAAGATCTATCAATGGCCTGGACTATGCAAATGCTCGAGCAAATACGGAACCTTGTAGAAGTGACTAGAGCCGATGATATTGGCACCGTGGTAAACAATCTGCCACTGCAATGGGCTTCCAGAAAAGGTAGAACAGGTGTTGGAAAGCCATCAACTGCTCTTACTCTTCCTTCTAGTAAAAGGAGTGCATCAAGGCAAAAGACCCGCAAACGAAGAAGATTGTCAAGATTAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

374

Amino Acids

42.73

Weight (kDa)

9.18

Isoelectric Point (pI)

48.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60560 AT1G60560 AT1G60560
fragaria_vesca	FvH4_1g11391
malus_domestica	MD14G1040800.v1.1
prunus_persica	Prupe.7G172200_v2.0.a1
pyrus_communis	pycom14g03460
rosa_chinensis	RchiOBHm_Chr2g0098931 RchiOBHm_Chr2g0098941 RchiOBHm_Chr4g0406971 RchiOBHm_Chr7g0185761 RchiOBHm_Chr7g0219821
rosa_laevigata	RLG00000016835 RLG00000036043 RLG00000036045
rosa_multiflora	Rmu_sc0000600.1_g000016 Rmu_sc0000936.1_g000018 Rmu_sc0000936.1_g000019 Rmu_sc0007649.1_g000004 Rmu_sc0009833.1_g000012 Rmu_sc0027115.1_g000002
rosa_roxburghii	Rroxscaffold_1G00011620 Rroxscaffold_2G00143560
rosa_rugosa	Rorug03G0254100 Rorug03G0293700 Rorug04G0076000 Rorug04G0076100 Rorug04G0076200
rosa_samantha	Rh4AG141800 Rh4BG138900 Rh4DG135900 Rh5AG453500 Rh5AG453600 Rh5DG485000 Rh7DG249200
rosa_wichuraiana	Rw0G006010 Rw2G009560 Rw4G011550 Rw5G042350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	331, 971
AciI	CCGC	3 cut(s)	257, 374, 1093
AclI	AACGTT	1 cut(s)	756
AclWI	GGATC	2 cut(s)	83, 718
AcsI	RAATTY	2 cut(s)	609, 716
AcvI	CACGTG	1 cut(s)	418
AfaI	GTAC	1 cut(s)	690
AjnI	CCWGG	3 cut(s)	37, 279, 905
AjuI	GAANNNNNNNTTGG	4 cut(s)	460, 492, 862, 894
AluBI	AGCT	3 cut(s)	23, 80, 505
AluI	AGCT	3 cut(s)	23, 80, 505
Alw21I	GWGCWC	4 cut(s)	25, 463, 489, 604
Alw26I	GTCTC	2 cut(s)	77, 653
Alw44I	GTGCAC	1 cut(s)	485
AlwI	GGATC	2 cut(s)	83, 718
AlwNI	CAGNNNCTG	1 cut(s)	80
Ama87I	CYCGRG	1 cut(s)	923
AoxI	GGCC	2 cut(s)	48, 903
ApaLI	GTGCAC	1 cut(s)	485
ApeKI	GCWGC	3 cut(s)	74, 77, 505
ApoI	RAATTY	2 cut(s)	609, 716
AspS9I	GGNCC	1 cut(s)	48
AsuC2I	CCSGG	1 cut(s)	708
AsuII	TTCGAA	1 cut(s)	142
AvaI	CYCGRG	1 cut(s)	923
BaeGI	GKGCMC	1 cut(s)	489
BaeI	ACNNNNGTAYC	2 cut(s)	243, 276
BanI	GGYRCC	2 cut(s)	331, 971
BanII	GRGCYC	1 cut(s)	25
BbrPI	CACGTG	1 cut(s)	418
BbsI	GAAGAC	1 cut(s)	362
Bbv12I	GWGCWC	4 cut(s)	25, 463, 489, 604
BbvCI	CCTCAGC	1 cut(s)	155
BbvI	GCAGC	3 cut(s)	86, 89, 492
BccI	CCATC	3 cut(s)	36, 101, 1045
BcgI	CGANNNNNNTGC	2 cut(s)	515, 549
BciT130I	CCWGG	3 cut(s)	39, 281, 907
BclI	TGATCA	1 cut(s)	292
BcnI	CCSGG	1 cut(s)	708
BcoDI	GTCTC	2 cut(s)	77, 653
BfaI	CTAG	3 cut(s)	695, 954, 1062
BglII	AGATCT	1 cut(s)	892
BisI	GCNGC	3 cut(s)	75, 78, 506
BlsI	GCNGC	3 cut(s)	76, 79, 507
Bme1390I	CCNGG	4 cut(s)	39, 281, 708, 907
BmeT110I	CYCGRG	1 cut(s)	923
BmgT120I	GGNCC	1 cut(s)	48
BmiI	GGNNCC	3 cut(s)	333, 938, 973
BmrFI	CCNGG	4 cut(s)	39, 281, 708, 907
BmsI	GCATC	4 cut(s)	61, 401, 735, 1085
BpiI	GAAGAC	1 cut(s)	362
BplI	GAGNNNNNCTC	2 cut(s)	494, 526
Bpu10I	CCTNAGC	1 cut(s)	155
Bpu14I	TTCGAA	1 cut(s)	142
BpuMI	CCSGG	1 cut(s)	708
BsaAI	YACGTR	1 cut(s)	418
BsaBI	GATNNNNATC	1 cut(s)	450
BsaJI	CCNNGG	4 cut(s)	279, 630, 657, 975
BsaXI	ACNNNNNCTCC	2 cut(s)	37, 67
Bse1I	ACTGG	3 cut(s)	51, 524, 829
Bse3DI	GCAATG	1 cut(s)	1004
Bse8I	GATNNNNATC	1 cut(s)	450
BseBI	CCWGG	3 cut(s)	39, 281, 907
BseDI	CCNNGG	4 cut(s)	279, 630, 657, 975
BseGI	GGATG	2 cut(s)	47, 640
BseJI	GATNNNNATC	1 cut(s)	450
BseMI	GCAATG	1 cut(s)	1004
BseMII	CTCAG	4 cut(s)	72, 146, 492, 525
BseNI	ACTGG	3 cut(s)	51, 524, 829
BseSI	GKGCMC	1 cut(s)	489
BseXI	GCAGC	3 cut(s)	86, 89, 492
BsgI	GTGCAG	1 cut(s)	491
Bsh1285I	CGRYCG	1 cut(s)	529
BshFI	GGCC	2 cut(s)	50, 905
BshNI	GGYRCC	2 cut(s)	331, 971
BsiEI	CGRYCG	1 cut(s)	529
BsiHKAI	GWGCWC	4 cut(s)	25, 463, 489, 604
BsiHKCI	CYCGRG	1 cut(s)	923
BsiSI	CCGG	1 cut(s)	708
BsmAI	GTCTC	2 cut(s)	77, 653
BsmBI	CGTCTC	1 cut(s)	653
BsnI	GGCC	2 cut(s)	50, 905
BsoBI	CYCGRG	1 cut(s)	923
Bsp119I	TTCGAA	1 cut(s)	142
Bsp1286I	GDGCHC	4 cut(s)	25, 463, 489, 604
Bsp1407I	TGTACA	1 cut(s)	688
Bsp143I	GATC	6 cut(s)	88, 146, 292, 710, 786, 892
BspACI	CCGC	3 cut(s)	257, 374, 1093
BspANI	GGCC	2 cut(s)	50, 905
BspCNI	CTCAG	4 cut(s)	73, 147, 493, 524
BspLI	GGNNCC	3 cut(s)	333, 938, 973
BspPI	GGATC	2 cut(s)	83, 718
BspT104I	TTCGAA	1 cut(s)	142
BspT107I	GGYRCC	2 cut(s)	331, 971
BsrDI	GCAATG	1 cut(s)	1004
BsrGI	TGTACA	1 cut(s)	688
BsrI	ACTGG	3 cut(s)	51, 524, 829
BssECI	CCNNGG	4 cut(s)	279, 630, 657, 975
BssMI	GATC	6 cut(s)	88, 146, 292, 710, 786, 892
BssT1I	CCWWGG	2 cut(s)	630, 657
Bst2UI	CCWGG	3 cut(s)	39, 281, 907
Bst4CI	ACNGT	4 cut(s)	647, 680, 734, 976
Bst6I	CTCTTC	2 cut(s)	463, 1059
BstAPI	GCANNNNNTGC	1 cut(s)	398
BstAUI	TGTACA	1 cut(s)	688
BstBAI	YACGTR	1 cut(s)	418
BstBI	TTCGAA	1 cut(s)	142
BstC8I	GCNNGC	2 cut(s)	378, 764
BstDEI	CTNAG	6 cut(s)	81, 155, 265, 336, 501, 511
BstDSI	CCRYGG	1 cut(s)	975
BstF5I	GGATG	2 cut(s)	47, 640
BstKTI	GATC	6 cut(s)	91, 149, 295, 713, 789, 895
BstMAI	GTCTC	2 cut(s)	77, 653
BstMBI	GATC	6 cut(s)	88, 146, 292, 710, 786, 892
BstMCI	CGRYCG	1 cut(s)	529
BstMWI	GCNNNNNNNGC	2 cut(s)	398, 407
BstNI	CCWGG	3 cut(s)	39, 281, 907
BstNSI	RCATGY	1 cut(s)	770
BstSCI	CCNGG	4 cut(s)	37, 279, 706, 905
BstSLI	GKGCMC	1 cut(s)	489
BstV1I	GCAGC	3 cut(s)	86, 89, 492
BstV2I	GAAGAC	1 cut(s)	362
BstX2I	RGATCY	1 cut(s)	892
BstXI	CCANNNNNNTGG	1 cut(s)	999
BstYI	RGATCY	1 cut(s)	892
BsuRI	GGCC	2 cut(s)	50, 905
BtgI	CCRYGG	1 cut(s)	975
BtsCI	GGATG	2 cut(s)	47, 640
BtsI	GCAGTG	2 cut(s)	602, 992
BtsIMutI	CAGTG	3 cut(s)	58, 602, 992
Cac8I	GCNNGC	2 cut(s)	378, 764
CaiI	CAGNNNCTG	1 cut(s)	80
Cfr13I	GGNCC	1 cut(s)	48
Csp6I	GTAC	1 cut(s)	689
CviAII	CATG	4 cut(s)	150, 230, 767, 820
CviQI	GTAC	1 cut(s)	689
DdeI	CTNAG	6 cut(s)	81, 155, 265, 336, 501, 511
DpnI	GATC	6 cut(s)	90, 148, 294, 712, 788, 894
DpnII	GATC	6 cut(s)	88, 146, 292, 710, 786, 892
DraI	TTTAAA	2 cut(s)	208, 319
Eam1104I	CTCTTC	2 cut(s)	463, 1059
EarI	CTCTTC	2 cut(s)	463, 1059
Ecl136II	GAGCTC	1 cut(s)	23
Eco130I	CCWWGG	2 cut(s)	630, 657
Eco24I	GRGCYC	1 cut(s)	25
Eco53kI	GAGCTC	1 cut(s)	23
Eco72I	CACGTG	1 cut(s)	418
Eco88I	CYCGRG	1 cut(s)	923
EcoICRI	GAGCTC	1 cut(s)	23
EcoRII	CCWGG	3 cut(s)	37, 279, 905
EcoT14I	CCWWGG	2 cut(s)	630, 657
EcoT38I	GRGCYC	1 cut(s)	25
ErhI	CCWWGG	2 cut(s)	630, 657
Esp3I	CGTCTC	1 cut(s)	653
FaeI	CATG	4 cut(s)	153, 233, 770, 823
FatI	CATG	4 cut(s)	149, 229, 766, 819
FauI	CCCGC	1 cut(s)	1100
FbaI	TGATCA	1 cut(s)	292
Fnu4HI	GCNGC	3 cut(s)	75, 78, 506
FokI	GGATG	2 cut(s)	54, 647
FriOI	GRGCYC	1 cut(s)	25
Fsp4HI	GCNGC	3 cut(s)	75, 78, 506
FspBI	CTAG	3 cut(s)	695, 954, 1062
GluI	GCNGC	3 cut(s)	75, 78, 506
HaeIII	GGCC	2 cut(s)	50, 905
HapII	CCGG	1 cut(s)	708
Hin1II	CATG	4 cut(s)	153, 233, 770, 823
HinfI	GANTC	5 cut(s)	446, 548, 617, 703, 878
HpaII	CCGG	1 cut(s)	708
Hpy166II	GTNNAC	2 cut(s)	487, 982
Hpy188I	TCNGA	3 cut(s)	297, 467, 715
Hpy188III	TCNNGA	4 cut(s)	386, 614, 1008, 1113
Hpy8I	GTNNAC	2 cut(s)	487, 982
HpyAV	CCTTC	2 cut(s)	825, 1068
HpyCH4III	ACNGT	4 cut(s)	647, 680, 734, 976
HpyCH4IV	ACGT	4 cut(s)	211, 417, 561, 756
HpyF10VI	GCNNNNNNNGC	2 cut(s)	398, 407
HpyF3I	CTNAG	6 cut(s)	81, 155, 265, 336, 501, 511
HpySE526I	ACGT	4 cut(s)	211, 417, 561, 756
Hsp92II	CATG	4 cut(s)	153, 233, 770, 823
Ksp22I	TGATCA	1 cut(s)	292
Kzo9I	GATC	6 cut(s)	88, 146, 292, 710, 786, 892
LmnI	GCTCC	1 cut(s)	458
Lsp1109I	GCAGC	3 cut(s)	86, 89, 492
LweI	GCATC	4 cut(s)	61, 401, 735, 1085
MaeI	CTAG	3 cut(s)	695, 954, 1062
MaeII	ACGT	4 cut(s)	211, 417, 561, 756
MaeIII	GTNAC	3 cut(s)	625, 728, 949
MalI	GATC	6 cut(s)	90, 148, 294, 712, 788, 894
MboI	GATC	6 cut(s)	88, 146, 292, 710, 786, 892
MboII	GAAGA	7 cut(s)	156, 362, 480, 581, 1046, 1113, 1116
MflI	RGATCY	1 cut(s)	892
MhlI	GDGCHC	4 cut(s)	25, 463, 489, 604
MluCI	AATT	5 cut(s)	63, 434, 609, 716, 882
MmeI	TCCRAC	1 cut(s)	1009
MnlI	CCTC	5 cut(s)	39, 140, 150, 382, 868
MseI	TTAA	4 cut(s)	62, 207, 318, 1118
MslI	CAYNNNNRTG	1 cut(s)	997
MspA1I	CMGCKG	2 cut(s)	80, 257
MspI	CCGG	1 cut(s)	708
MspR9I	CCNGG	4 cut(s)	39, 281, 708, 907
MvaI	CCWGG	3 cut(s)	39, 281, 907
MwoI	GCNNNNNNNGC	2 cut(s)	398, 407
NciI	CCSGG	1 cut(s)	708
NdeII	GATC	6 cut(s)	88, 146, 292, 710, 786, 892
NlaIII	CATG	4 cut(s)	153, 233, 770, 823
NlaIV	GGNNCC	3 cut(s)	333, 938, 973
NmuCI	GTSAC	2 cut(s)	728, 949
NspI	RCATGY	1 cut(s)	770
NspV	TTCGAA	1 cut(s)	142
PaeR7I	CTCGAG	1 cut(s)	923
PfeI	GAWTC	5 cut(s)	446, 548, 617, 703, 878
PfoI	TCCNGGA	1 cut(s)	706
PkrI	GCNGC	3 cut(s)	76, 79, 507
PmaCI	CACGTG	1 cut(s)	418
PmlI	CACGTG	1 cut(s)	418
Ppu21I	YACGTR	1 cut(s)	418
Psp124BI	GAGCTC	1 cut(s)	25
Psp1406I	AACGTT	1 cut(s)	756
Psp6I	CCWGG	3 cut(s)	37, 279, 905
PspCI	CACGTG	1 cut(s)	418
PspGI	CCWGG	3 cut(s)	37, 279, 905
PspN4I	GGNNCC	3 cut(s)	333, 938, 973
PspPI	GGNCC	1 cut(s)	48
PspXI	VCTCGAGB	1 cut(s)	923
PstNI	CAGNNNCTG	1 cut(s)	80
PsuI	RGATCY	1 cut(s)	892
PvuII	CAGCTG	1 cut(s)	80
RsaI	GTAC	1 cut(s)	690
RsaNI	GTAC	1 cut(s)	689
RseI	CAYNNNNRTG	1 cut(s)	997
SacI	GAGCTC	1 cut(s)	25
SaqAI	TTAA	4 cut(s)	62, 207, 318, 1118
SatI	GCNGC	3 cut(s)	75, 78, 506
Sau3AI	GATC	6 cut(s)	88, 146, 292, 710, 786, 892
Sau96I	GGNCC	1 cut(s)	48
ScrFI	CCNGG	4 cut(s)	39, 281, 708, 907
SduI	GDGCHC	4 cut(s)	25, 463, 489, 604
SfaNI	GCATC	4 cut(s)	61, 401, 735, 1085
Sfr274I	CTCGAG	1 cut(s)	923
SfuI	TTCGAA	1 cut(s)	142
SlaI	CTCGAG	1 cut(s)	923
SmiMI	CAYNNNNRTG	1 cut(s)	997
SmlI	CTYRAG	1 cut(s)	923
SmoI	CTYRAG	1 cut(s)	923
Sse9I	AATT	5 cut(s)	63, 434, 609, 716, 882
SsiI	CCGC	3 cut(s)	257, 374, 1093
SspI	AATATT	3 cut(s)	163, 223, 314
SspMI	CTAG	3 cut(s)	695, 954, 1062
SstI	GAGCTC	1 cut(s)	25
StyD4I	CCNGG	4 cut(s)	37, 279, 706, 905
StyI	CCWWGG	2 cut(s)	630, 657
TaaI	ACNGT	4 cut(s)	647, 680, 734, 976
TaiI	ACGT	4 cut(s)	214, 420, 564, 759
TaqI	TCGA	5 cut(s)	19, 142, 525, 743, 924
TaqII	GACCGA	1 cut(s)	543
TasI	AATT	5 cut(s)	63, 434, 609, 716, 882
TatI	WGTACW	1 cut(s)	688
TfiI	GAWTC	5 cut(s)	446, 548, 617, 703, 878
Tru1I	TTAA	4 cut(s)	62, 207, 318, 1118
Tru9I	TTAA	4 cut(s)	62, 207, 318, 1118
TscAI	CASTG	3 cut(s)	58, 609, 999
TseFI	GTSAC	2 cut(s)	728, 949
TseI	GCWGC	3 cut(s)	74, 77, 505
Tsp45I	GTSAC	2 cut(s)	728, 949
TspDTI	ATGAA	1 cut(s)	555
TspGWI	ACGGA	1 cut(s)	949
TspRI	CASTG	3 cut(s)	58, 609, 999
VneI	GTGCAC	1 cut(s)	485
XapI	RAATTY	2 cut(s)	609, 716
XceI	RCATGY	1 cut(s)	770
XhoI	CTCGAG	1 cut(s)	923
XspI	CTAG	3 cut(s)	695, 954, 1062

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.