Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002808

Physical Location & Seq

Genomic Coordinates Forward (+)

5849848 .. 5850435

Gene Structure 588 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16580

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGTTGTTTGTGCCTCAAGTTGAATGTACAGTGGATGTTCTCAAGGCCTTACACTTCCTTTTCACACCAGTAGTTAATATTGCACATCAGGAGGCATGTGGTGCTATTGAAGCATATCACCTAGAGTTGAAAGTGAAATTGTTTGCTGATTCACATCTTGGAACACTCCAAAGAGTTCATTCGTTAGTACACAAGTTGACAACAGAGCTGCACTCAGGCTACGGGTTAGACCAATATGCTGATAAATGTGGTTCTTTTCAAAACGTCAATGAAGAATGTATTGCTTCTAAGTCTTGGCACAGGGTACTGCAAATTTCTGATTCTACTGTTACCATGGATGATAAAAGTCTTCTCTTTGCCAAGGTTTCAAGCCAGAAGAACTGTAACATTATACATCTAGTGTGGATTTTGGGATTAGAATTTTCCTTTTGTGACTATGTGTGGTCGATGCAAGGAAACATTTGCAAGCATGCCACCAAAATTAATATGATCTGTGAAAATCTTCAAGGTTGGCCCTATGCACTTACCACCATTGCAGTTTCTGAAATTTCTGAAATTTCACGTTTGGTTATCGCTGCAATTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

195

Amino Acids

21.93

Weight (kDa)

6.03

Isoelectric Point (pI)

46.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60560 AT1G60560 AT1G60560
fragaria_vesca	FvH4_1g11391
malus_domestica	MD14G1040800.v1.1
prunus_persica	Prupe.7G172200_v2.0.a1
pyrus_communis	pycom14g03460
rosa_chinensis	RchiOBHm_Chr2g0098931 RchiOBHm_Chr2g0098941 RchiOBHm_Chr4g0406971 RchiOBHm_Chr7g0185761 RchiOBHm_Chr7g0219821
rosa_laevigata	RLG00000016835 RLG00000036043 RLG00000036045
rosa_multiflora	Rmu_sc0000600.1_g000016 Rmu_sc0000936.1_g000018 Rmu_sc0000936.1_g000019 Rmu_sc0007649.1_g000004 Rmu_sc0009833.1_g000012 Rmu_sc0027115.1_g000002
rosa_roxburghii	Rroxscaffold_1G00011620 Rroxscaffold_2G00143560
rosa_rugosa	Rorug03G0254100 Rorug03G0293700 Rorug04G0076000 Rorug04G0076100 Rorug04G0076200
rosa_samantha	Rh4AG141800 Rh4BG138900 Rh4DG135900 Rh5AG453500 Rh5AG453600 Rh5DG485000 Rh7DG249200
rosa_wichuraiana	Rw0G006010 Rw2G009560 Rw4G011550 Rw5G042350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	4 cut(s)	312, 419, 546, 555
AfaI	GTAC	3 cut(s)	28, 189, 306
AgsI	TTSAA	6 cut(s)	23, 110, 130, 260, 369, 506
AluBI	AGCT	1 cut(s)	208
AluI	AGCT	1 cut(s)	208
AlwNI	CAGNNNCTG	1 cut(s)	542
AoxI	GGCC	2 cut(s)	45, 512
ApeKI	GCWGC	2 cut(s)	208, 575
ApoI	RAATTY	4 cut(s)	312, 419, 546, 555
AseI	ATTAAT	1 cut(s)	483
Asp700I	GAANNNNTTC	1 cut(s)	501
AspS9I	GGNCC	1 cut(s)	513
AsuHPI	GGTGA	1 cut(s)	110
BbsI	GAAGAC	1 cut(s)	341
BbvI	GCAGC	2 cut(s)	195, 562
BfaI	CTAG	2 cut(s)	122, 398
BisI	GCNGC	2 cut(s)	209, 576
BlsI	GCNGC	2 cut(s)	210, 577
BmgT120I	GGNCC	1 cut(s)	513
BmsI	GCATC	1 cut(s)	438
BpiI	GAAGAC	1 cut(s)	341
BplI	GAGNNNNNCTC	2 cut(s)	197, 229
BpuEI	CTTGAG	1 cut(s)	26
BsaBI	GATNNNNATC	1 cut(s)	153
BsaJI	CCNNGG	2 cut(s)	333, 360
Bse1I	ACTGG	1 cut(s)	68
Bse3DI	GCAATG	1 cut(s)	531
Bse8I	GATNNNNATC	1 cut(s)	153
BseDI	CCNNGG	2 cut(s)	333, 360
BseGI	GGATG	2 cut(s)	40, 343
BseJI	GATNNNNATC	1 cut(s)	153
BseMI	GCAATG	1 cut(s)	531
BseMII	CTCAG	1 cut(s)	228
BseNI	ACTGG	1 cut(s)	68
BseXI	GCAGC	2 cut(s)	195, 562
BsgI	GTGCAG	1 cut(s)	194
BshFI	GGCC	2 cut(s)	47, 514
BsnI	GGCC	2 cut(s)	47, 514
Bsp1407I	TGTACA	1 cut(s)	26
Bsp143I	GATC	1 cut(s)	489
Bsp19I	CCATGG	1 cut(s)	333
BspANI	GGCC	2 cut(s)	47, 514
BspCNI	CTCAG	1 cut(s)	227
BsrDI	GCAATG	1 cut(s)	531
BsrGI	TGTACA	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	68
BssECI	CCNNGG	2 cut(s)	333, 360
BssMI	GATC	1 cut(s)	489
BssT1I	CCWWGG	2 cut(s)	333, 360
Bst4CI	ACNGT	3 cut(s)	31, 328, 383
BstAPI	GCANNNNNTGC	1 cut(s)	101
BstAUI	TGTACA	1 cut(s)	26
BstC8I	GCNNGC	2 cut(s)	467, 471
BstDEI	CTNAG	2 cut(s)	214, 288
BstDSI	CCRYGG	1 cut(s)	333
BstF5I	GGATG	2 cut(s)	40, 343
BstKTI	GATC	1 cut(s)	492
BstMBI	GATC	1 cut(s)	489
BstMWI	GCNNNNNNNGC	2 cut(s)	101, 110
BstNSI	RCATGY	2 cut(s)	99, 473
BstV1I	GCAGC	2 cut(s)	195, 562
BstV2I	GAAGAC	1 cut(s)	341
BsuRI	GGCC	2 cut(s)	47, 514
BtgI	CCRYGG	1 cut(s)	333
BtsCI	GGATG	2 cut(s)	40, 343
BtsIMutI	CAGTG	1 cut(s)	36
Cac8I	GCNNGC	2 cut(s)	467, 471
CaiI	CAGNNNCTG	1 cut(s)	542
Cfr13I	GGNCC	1 cut(s)	513
Csp6I	GTAC	3 cut(s)	27, 188, 305
CviAII	CATG	3 cut(s)	96, 334, 470
CviJI	RGCY	5 cut(s)	47, 208, 219, 372, 514
CviKI_1	RGCY	5 cut(s)	47, 208, 219, 372, 514
CviQI	GTAC	3 cut(s)	27, 188, 305
DdeI	CTNAG	2 cut(s)	214, 288
DpnI	GATC	1 cut(s)	491
DpnII	GATC	1 cut(s)	489
Eco130I	CCWWGG	2 cut(s)	333, 360
Eco147I	AGGCCT	1 cut(s)	47
EcoT14I	CCWWGG	2 cut(s)	333, 360
ErhI	CCWWGG	2 cut(s)	333, 360
FaeI	CATG	3 cut(s)	99, 337, 473
FaiI	YATR	9 cut(s)	97, 115, 237, 335, 392, 438, 471, 488, 519
FatI	CATG	3 cut(s)	95, 333, 469
Fnu4HI	GCNGC	2 cut(s)	209, 576
FokI	GGATG	2 cut(s)	47, 350
Fsp4HI	GCNGC	2 cut(s)	209, 576
FspBI	CTAG	2 cut(s)	122, 398
GluI	GCNGC	2 cut(s)	209, 576
HaeIII	GGCC	2 cut(s)	47, 514
Hin1II	CATG	3 cut(s)	99, 337, 473
HincII	GTYRAC	1 cut(s)	198
HindII	GTYRAC	1 cut(s)	198
HinfI	GANTC	2 cut(s)	149, 320
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	2 cut(s)	190, 198
Hpy188I	TCNGA	3 cut(s)	319, 544, 553
Hpy188III	TCNNGA	1 cut(s)	89
Hpy8I	GTNNAC	2 cut(s)	190, 198
HpyCH4III	ACNGT	3 cut(s)	31, 328, 383
HpyCH4IV	ACGT	2 cut(s)	264, 562
HpyCH4V	TGCA	8 cut(s)	83, 211, 310, 451, 465, 521, 536, 578
HpyF10VI	GCNNNNNNNGC	2 cut(s)	101, 110
HpyF3I	CTNAG	2 cut(s)	214, 288
HpySE526I	ACGT	2 cut(s)	264, 562
Hsp92II	CATG	3 cut(s)	99, 337, 473
Kzo9I	GATC	1 cut(s)	489
LpnPI	CCDG	5 cut(s)	74, 81, 201, 286, 386
Lsp1109I	GCAGC	2 cut(s)	195, 562
LweI	GCATC	1 cut(s)	438
MaeI	CTAG	2 cut(s)	122, 398
MaeII	ACGT	2 cut(s)	264, 562
MaeIII	GTNAC	3 cut(s)	328, 383, 431
MalI	GATC	1 cut(s)	491
MboI	GATC	1 cut(s)	489
MboII	GAAGA	4 cut(s)	284, 341, 388, 494
MluCI	AATT	7 cut(s)	137, 312, 419, 480, 546, 555, 579
MnlI	CCTC	2 cut(s)	24, 85
MroXI	GAANNNNTTC	1 cut(s)	501
MseI	TTAA	2 cut(s)	75, 483
MwoI	GCNNNNNNNGC	2 cut(s)	101, 110
NcoI	CCATGG	1 cut(s)	333
NdeII	GATC	1 cut(s)	489
NlaIII	CATG	3 cut(s)	99, 337, 473
NmuCI	GTSAC	1 cut(s)	431
NspI	RCATGY	2 cut(s)	99, 473
PaeI	GCATGC	1 cut(s)	473
PceI	AGGCCT	1 cut(s)	47
PdmI	GAANNNNTTC	1 cut(s)	501
PfeI	GAWTC	2 cut(s)	149, 320
PkrI	GCNGC	2 cut(s)	210, 577
PshBI	ATTAAT	1 cut(s)	483
PspPI	GGNCC	1 cut(s)	513
PstNI	CAGNNNCTG	1 cut(s)	542
RsaI	GTAC	3 cut(s)	28, 189, 306
RsaNI	GTAC	3 cut(s)	27, 188, 305
SaqAI	TTAA	2 cut(s)	75, 483
SatI	GCNGC	2 cut(s)	209, 576
Sau3AI	GATC	1 cut(s)	489
Sau96I	GGNCC	1 cut(s)	513
SetI	ASST	6 cut(s)	123, 210, 267, 366, 511, 565
SfaNI	GCATC	1 cut(s)	438
SmlI	CTYRAG	2 cut(s)	15, 41
SmoI	CTYRAG	2 cut(s)	15, 41
SphI	GCATGC	1 cut(s)	473
Sse9I	AATT	7 cut(s)	137, 312, 419, 480, 546, 555, 579
SseBI	AGGCCT	1 cut(s)	47
SspI	AATATT	1 cut(s)	79
SspMI	CTAG	2 cut(s)	122, 398
StuI	AGGCCT	1 cut(s)	47
StyI	CCWWGG	2 cut(s)	333, 360
TaaI	ACNGT	3 cut(s)	31, 328, 383
TaiI	ACGT	2 cut(s)	267, 565
TaqI	TCGA	1 cut(s)	446
TasI	AATT	7 cut(s)	137, 312, 419, 480, 546, 555, 579
TatI	WGTACW	2 cut(s)	26, 187
TfiI	GAWTC	2 cut(s)	149, 320
Tru1I	TTAA	2 cut(s)	75, 483
Tru9I	TTAA	2 cut(s)	75, 483
TscAI	CASTG	1 cut(s)	36
TseFI	GTSAC	1 cut(s)	431
TseI	GCWGC	2 cut(s)	208, 575
Tsp45I	GTSAC	1 cut(s)	431
TspDTI	ATGAA	2 cut(s)	167, 285
TspRI	CASTG	1 cut(s)	36
VspI	ATTAAT	1 cut(s)	483
XapI	RAATTY	4 cut(s)	312, 419, 546, 555
XceI	RCATGY	2 cut(s)	99, 473
XmnI	GAANNNNTTC	1 cut(s)	501
XspI	CTAG	2 cut(s)	122, 398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.