Rorug04G0076200

SWIM zinc finger family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0002808
Physical Location & Seq
Reverse (-)
11674021 .. 11676740
2720 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0076200.1

Sequence Viewer

Length: 558 bp
ATGTCTGAGATAGTCAACGAGGCTTGGAGAAAATACCGTATACAACTTCAGTCCTACCCTCTCAGGACCAAGGCAATTACAGCAGGAGTTTTGATTGGGGTTAGTGATGGAATAGCCCAGAAGATCTCTGGGATCAAGAAGCTTCAACTCAGAAGATTGTTTCTTATGATGCTCTATGGGTTTGCGTATACAGGGCCATTTGGGCACTTCCTCCACAAATTGATGGATATAATATTCAAGGGAAAGAAGGACAACAAAACTGTTGCAAAGAAGGTTCTGCTGGAACAGTTAACTTCATCTCCTTGGAACAACCTGTTTTTCATGCTGTACTATGGCTTGGTGGTTGAAGGTAGACCATGGAGTTTAGTTAGGACAAAAGTTCGAAAGGACTACCCTTCCGTTCAGTTGACTGCATGGAAGTTTTGGCCTATTGTTGGTTGGGTGAACTACCAGTATATGCCTTTGCAGTTCCGGGTTTTATTTCACAGCTTCATTGGTTCATGCTGGGCAATCTTCCTTAATCTGAAGGCTAGATCAGTGGTGATAAAGCAGGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

185

Amino Acids

21.6

Weight (kDa)

10.27

Isoelectric Point (pI)

38.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 114 - 174 3.4e-20 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 40, 188, 352
AclWI GGATC 1 cut(s) 140
AcuI CTGAAG 2 cut(s) 32, 545
AfaI GTAC 1 cut(s) 329
AfiI CCNNNNNNNGG 1 cut(s) 434
AgsI TTSAA 3 cut(s) 146, 238, 347
AluBI AGCT 2 cut(s) 142, 489
AluI AGCT 2 cut(s) 142, 489
AlwI GGATC 1 cut(s) 140
AoxI GGCC 2 cut(s) 194, 425
AspS9I GGNCC 2 cut(s) 66, 194
AsuC2I CCSGG 1 cut(s) 473
AsuHPI GGTGA 2 cut(s) 454, 553
AsuII TTCGAA 1 cut(s) 382
AvaII GGWCC 1 cut(s) 66
BaeGI GKGCMC 1 cut(s) 207
BccI CCATC 2 cut(s) 101, 217
BcnI CCSGG 1 cut(s) 473
BfaI CTAG 1 cut(s) 531
BglI GCCNNNNNGGC 1 cut(s) 202
BglII AGATCT 1 cut(s) 123
Bme1390I CCNGG 1 cut(s) 473
Bme18I GGWCC 1 cut(s) 66
BmgT120I GGNCC 2 cut(s) 66, 194
BmrFI CCNGG 1 cut(s) 473
BmsI GCATC 1 cut(s) 159
Bpu14I TTCGAA 1 cut(s) 382
BpuMI CCSGG 1 cut(s) 473
BsaJI CCNNGG 3 cut(s) 69, 302, 356
BsaXI ACNNNNNCTCC 2 cut(s) 283, 313
Bsc4I CCNNNNNNNGG 1 cut(s) 434
Bse1I ACTGG 1 cut(s) 451
BseDI CCNNGG 3 cut(s) 69, 302, 356
BseLI CCNNNNNNNGG 1 cut(s) 434
BseMII CTCAG 2 cut(s) 76, 163
BseNI ACTGG 1 cut(s) 451
BseSI GKGCMC 1 cut(s) 207
BseYI CCCAGC 1 cut(s) 504
BshFI GGCC 2 cut(s) 196, 427
BsiSI CCGG 1 cut(s) 472
BslI CCNNNNNNNGG 1 cut(s) 434
BsnI GGCC 2 cut(s) 196, 427
Bsp119I TTCGAA 1 cut(s) 382
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 3 cut(s) 123, 132, 533
Bsp19I CCATGG 1 cut(s) 356
BspANI GGCC 2 cut(s) 196, 427
BspCNI CTCAG 2 cut(s) 75, 162
BspPI GGATC 1 cut(s) 140
BspT104I TTCGAA 1 cut(s) 382
BsrI ACTGG 1 cut(s) 451
BssECI CCNNGG 3 cut(s) 69, 302, 356
BssMI GATC 3 cut(s) 123, 132, 533
BssNAI GTATAC 2 cut(s) 41, 189
BssT1I CCWWGG 3 cut(s) 69, 302, 356
Bst1107I GTATAC 2 cut(s) 41, 189
Bst4CI ACNGT 3 cut(s) 38, 262, 288
BstBI TTCGAA 1 cut(s) 382
BstC8I GCNNGC 1 cut(s) 552
BstDEI CTNAG 3 cut(s) 6, 62, 149
BstDSI CCRYGG 1 cut(s) 356
BstKTI GATC 3 cut(s) 126, 135, 536
BstMBI GATC 3 cut(s) 123, 132, 533
BstMWI GCNNNNNNNGC 2 cut(s) 80, 202
BstSCI CCNGG 1 cut(s) 471
BstSLI GKGCMC 1 cut(s) 207
BstX2I RGATCY 1 cut(s) 123
BstYI RGATCY 1 cut(s) 123
BstZ17I GTATAC 2 cut(s) 41, 189
BsuRI GGCC 2 cut(s) 196, 427
BtgI CCRYGG 1 cut(s) 356
BtsIMutI CAGTG 1 cut(s) 543
Cac8I GCNNGC 1 cut(s) 552
Cfr13I GGNCC 2 cut(s) 66, 194
Csp6I GTAC 1 cut(s) 328
CviAII CATG 4 cut(s) 322, 357, 414, 501
CviJI RGCY 8 cut(s) 23, 116, 142, 196, 336, 427, 489, 530
CviKI_1 RGCY 8 cut(s) 23, 116, 142, 196, 336, 427, 489, 530
CviQI GTAC 1 cut(s) 328
DdeI CTNAG 3 cut(s) 6, 62, 149
DpnI GATC 3 cut(s) 125, 134, 535
DpnII GATC 3 cut(s) 123, 132, 533
Eco130I CCWWGG 3 cut(s) 69, 302, 356
Eco47I GGWCC 1 cut(s) 66
Eco57I CTGAAG 2 cut(s) 32, 545
EcoT14I CCWWGG 3 cut(s) 69, 302, 356
ErhI CCWWGG 3 cut(s) 69, 302, 356
FaeI CATG 4 cut(s) 325, 360, 417, 504
FatI CATG 4 cut(s) 321, 356, 413, 500
FblI GTMKAC 3 cut(s) 40, 188, 352
FspBI CTAG 1 cut(s) 531
GsaI CCCAGC 1 cut(s) 508
HaeIII GGCC 2 cut(s) 196, 427
HapII CCGG 1 cut(s) 472
Hin1II CATG 4 cut(s) 325, 360, 417, 504
HincII GTYRAC 3 cut(s) 16, 291, 408
HindII GTYRAC 3 cut(s) 16, 291, 408
HindIII AAGCTT 1 cut(s) 140
HpaI GTTAAC 1 cut(s) 291
HpaII CCGG 1 cut(s) 472
HphI GGTGA 2 cut(s) 454, 553
Hpy166II GTNNAC 7 cut(s) 16, 41, 189, 291, 353, 408, 445
Hpy188I TCNGA 3 cut(s) 7, 152, 525
Hpy188III TCNNGA 2 cut(s) 64, 136
Hpy8I GTNNAC 7 cut(s) 16, 41, 189, 291, 353, 408, 445
HpyAV CCTTC 5 cut(s) 241, 265, 341, 405, 520
HpyCH4III ACNGT 3 cut(s) 38, 262, 288
HpyCH4V TGCA 3 cut(s) 266, 413, 466
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 202
HpyF3I CTNAG 3 cut(s) 6, 62, 149
Hsp92II CATG 4 cut(s) 325, 360, 417, 504
KspAI GTTAAC 1 cut(s) 291
Kzo9I GATC 3 cut(s) 123, 132, 533
LweI GCATC 1 cut(s) 159
MaeI CTAG 1 cut(s) 531
MalI GATC 3 cut(s) 125, 134, 535
MboI GATC 3 cut(s) 123, 132, 533
MboII GAAGA 3 cut(s) 133, 165, 505
MflI RGATCY 1 cut(s) 123
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 2 cut(s) 75, 218
MnlI CCTC 3 cut(s) 13, 69, 221
MseI TTAA 2 cut(s) 290, 519
MspI CCGG 1 cut(s) 472
MspR9I CCNGG 1 cut(s) 473
MwoI GCNNNNNNNGC 2 cut(s) 80, 202
NciI CCSGG 1 cut(s) 473
NcoI CCATGG 1 cut(s) 356
NdeII GATC 3 cut(s) 123, 132, 533
NlaIII CATG 4 cut(s) 325, 360, 417, 504
NspV TTCGAA 1 cut(s) 382
PspFI CCCAGC 1 cut(s) 504
PspPI GGNCC 2 cut(s) 66, 194
PsuI RGATCY 1 cut(s) 123
RsaI GTAC 1 cut(s) 329
RsaNI GTAC 1 cut(s) 328
SaqAI TTAA 2 cut(s) 290, 519
Sau3AI GATC 3 cut(s) 123, 132, 533
Sau96I GGNCC 2 cut(s) 66, 194
ScrFI CCNGG 1 cut(s) 473
SduI GDGCHC 1 cut(s) 207
SetI ASST 5 cut(s) 144, 276, 315, 352, 491
SfaNI GCATC 1 cut(s) 159
SfuI TTCGAA 1 cut(s) 382
SinI GGWCC 1 cut(s) 66
Sse9I AATT 2 cut(s) 75, 218
SspI AATATT 1 cut(s) 234
SspMI CTAG 1 cut(s) 531
StyD4I CCNGG 1 cut(s) 471
StyI CCWWGG 3 cut(s) 69, 302, 356
TaaI ACNGT 3 cut(s) 38, 262, 288
TaqI TCGA 1 cut(s) 382
TasI AATT 2 cut(s) 75, 218
TatI WGTACW 1 cut(s) 327
Tru1I TTAA 2 cut(s) 290, 519
Tru9I TTAA 2 cut(s) 290, 519
TscAI CASTG 1 cut(s) 543
TspDTI ATGAA 4 cut(s) 285, 310, 481, 489
TspGWI ACGGA 1 cut(s) 388
TspRI CASTG 1 cut(s) 543
VpaK11BI GGWCC 1 cut(s) 66
XcmI CCANNNNNNNNNTGG 1 cut(s) 125
XmiI GTMKAC 3 cut(s) 40, 188, 352
XspI CTAG 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.