Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000936.1

Orthogroup ID

OG0002808

Physical Location & Seq

Genomic Coordinates Forward (+)

91532 .. 92080

Gene Structure 549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000936.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

atgagaagtcttccgcttgcaagtcagaaggcatctggtgctattgaagcatatcatgtgaagttgaaagtgaaattgtttgatgattcacatcttggagcactccaaagagttgattggatagtgcacaaactgacaactgagctgcactcaggctactggctcgaccgatatgctgatgaatgtgattcttttcaaaacgtcaaggaagaatatattgcttctacatcttggcacagggcactgcaaattcctgattctgctgttaccttggatgataaaaaccgtctctttgccaaggtttcaagccagaaagacagtagcattgtacatctagtgtggaatcccggatcagaattttccttttgtgactgtgtgtggtcgatgcaaggaaacatttgcaagcatgtcatcaaagtcaatatgatctgtgaaagtcatcaaggttatcaaccttccatgtctttccagtcattcaaagagttgctcgtcagcctatcaaagaaaccaatggaggattcaatttcacaagatctatcaatggcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

182

Amino Acids

20.7

Weight (kDa)

6.22

Isoelectric Point (pI)

43.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60560 AT1G60560 AT1G60560
fragaria_vesca	FvH4_1g11391
malus_domestica	MD14G1040800.v1.1
prunus_persica	Prupe.7G172200_v2.0.a1
pyrus_communis	pycom14g03460
rosa_chinensis	RchiOBHm_Chr2g0098931 RchiOBHm_Chr2g0098941 RchiOBHm_Chr4g0406971 RchiOBHm_Chr7g0185761 RchiOBHm_Chr7g0219821
rosa_laevigata	RLG00000016835 RLG00000036043 RLG00000036045
rosa_multiflora	Rmu_sc0000600.1_g000016 Rmu_sc0000936.1_g000018 Rmu_sc0000936.1_g000019 Rmu_sc0007649.1_g000004 Rmu_sc0009833.1_g000012 Rmu_sc0027115.1_g000002
rosa_roxburghii	Rroxscaffold_1G00011620 Rroxscaffold_2G00143560
rosa_rugosa	Rorug03G0254100 Rorug03G0293700 Rorug04G0076000 Rorug04G0076100 Rorug04G0076200
rosa_samantha	Rh4AG141800 Rh4BG138900 Rh4DG135900 Rh5AG453500 Rh5AG453600 Rh5DG485000 Rh7DG249200
rosa_wichuraiana	Rw0G006010 Rw2G009560 Rw4G011550 Rw5G042350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	14
AclWI	GGATC	1 cut(s)	358
AcsI	RAATTY	2 cut(s)	249, 356
AfaI	GTAC	1 cut(s)	330
AgsI	TTSAA	6 cut(s)	47, 67, 197, 306, 478, 522
AjuI	GAANNNNNNNTTGG	2 cut(s)	502, 534
AluBI	AGCT	1 cut(s)	145
AluI	AGCT	1 cut(s)	145
Alw21I	GWGCWC	2 cut(s)	103, 129
Alw26I	GTCTC	1 cut(s)	293
Alw44I	GTGCAC	1 cut(s)	125
AlwI	GGATC	1 cut(s)	358
AoxI	GGCC	1 cut(s)	543
ApaLI	GTGCAC	1 cut(s)	125
ApeKI	GCWGC	1 cut(s)	145
ApoI	RAATTY	2 cut(s)	249, 356
AsuC2I	CCSGG	1 cut(s)	348
BaeGI	GKGCMC	2 cut(s)	129, 244
BbsI	GAAGAC	1 cut(s)	2
Bbv12I	GWGCWC	2 cut(s)	103, 129
BbvI	GCAGC	1 cut(s)	132
BcgI	CGANNNNNNTGC	2 cut(s)	155, 189
BcnI	CCSGG	1 cut(s)	348
BcoDI	GTCTC	1 cut(s)	293
BfaI	CTAG	1 cut(s)	335
BglII	AGATCT	1 cut(s)	532
BisI	GCNGC	1 cut(s)	146
BlsI	GCNGC	1 cut(s)	147
Bme1390I	CCNGG	1 cut(s)	348
BmrFI	CCNGG	1 cut(s)	348
BmsI	GCATC	2 cut(s)	41, 375
BpiI	GAAGAC	1 cut(s)	2
BplI	GAGNNNNNCTC	2 cut(s)	134, 166
BpuMI	CCSGG	1 cut(s)	348
BsaBI	GATNNNNATC	1 cut(s)	90
BsaJI	CCNNGG	2 cut(s)	270, 297
Bse1I	ACTGG	2 cut(s)	164, 469
Bse8I	GATNNNNATC	1 cut(s)	90
BseDI	CCNNGG	2 cut(s)	270, 297
BseGI	GGATG	1 cut(s)	280
BseJI	GATNNNNATC	1 cut(s)	90
BseMII	CTCAG	2 cut(s)	132, 165
BseNI	ACTGG	2 cut(s)	164, 469
BseSI	GKGCMC	2 cut(s)	129, 244
BseXI	GCAGC	1 cut(s)	132
BsgI	GTGCAG	1 cut(s)	131
Bsh1285I	CGRYCG	1 cut(s)	169
BshFI	GGCC	1 cut(s)	545
BsiEI	CGRYCG	1 cut(s)	169
BsiHKAI	GWGCWC	2 cut(s)	103, 129
BsiSI	CCGG	1 cut(s)	348
BsmAI	GTCTC	1 cut(s)	293
BsmBI	CGTCTC	1 cut(s)	293
BsnI	GGCC	1 cut(s)	545
Bsp1286I	GDGCHC	3 cut(s)	103, 129, 244
Bsp1407I	TGTACA	1 cut(s)	328
Bsp143I	GATC	3 cut(s)	350, 426, 532
BspACI	CCGC	1 cut(s)	14
BspANI	GGCC	1 cut(s)	545
BspCNI	CTCAG	2 cut(s)	133, 164
BspPI	GGATC	1 cut(s)	358
BsrGI	TGTACA	1 cut(s)	328
BsrI	ACTGG	2 cut(s)	164, 469
BssECI	CCNNGG	2 cut(s)	270, 297
BssMI	GATC	3 cut(s)	350, 426, 532
BssT1I	CCWWGG	2 cut(s)	270, 297
Bst4CI	ACNGT	3 cut(s)	287, 320, 374
BstAPI	GCANNNNNTGC	1 cut(s)	38
BstAUI	TGTACA	1 cut(s)	328
BstC8I	GCNNGC	2 cut(s)	18, 404
BstDEI	CTNAG	2 cut(s)	141, 151
BstF5I	GGATG	1 cut(s)	280
BstKTI	GATC	3 cut(s)	353, 429, 535
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	3 cut(s)	350, 426, 532
BstMCI	CGRYCG	1 cut(s)	169
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 47
BstNSI	RCATGY	1 cut(s)	410
BstSCI	CCNGG	1 cut(s)	346
BstSLI	GKGCMC	2 cut(s)	129, 244
BstV1I	GCAGC	1 cut(s)	132
BstV2I	GAAGAC	1 cut(s)	2
BstX2I	RGATCY	1 cut(s)	532
BstYI	RGATCY	1 cut(s)	532
BsuRI	GGCC	1 cut(s)	545
BtsCI	GGATG	1 cut(s)	280
BtsI	GCAGTG	1 cut(s)	242
BtsIMutI	CAGTG	1 cut(s)	242
Cac8I	GCNNGC	2 cut(s)	18, 404
Csp6I	GTAC	1 cut(s)	329
CviAII	CATG	3 cut(s)	56, 407, 460
CviJI	RGCY	6 cut(s)	145, 156, 163, 309, 495, 545
CviKI_1	RGCY	6 cut(s)	145, 156, 163, 309, 495, 545
CviQI	GTAC	1 cut(s)	329
DdeI	CTNAG	2 cut(s)	141, 151
DpnI	GATC	3 cut(s)	352, 428, 534
DpnII	GATC	3 cut(s)	350, 426, 532
Eco130I	CCWWGG	2 cut(s)	270, 297
EcoT14I	CCWWGG	2 cut(s)	270, 297
ErhI	CCWWGG	2 cut(s)	270, 297
Esp3I	CGTCTC	1 cut(s)	293
FaeI	CATG	3 cut(s)	59, 410, 463
FaiI	YATR	7 cut(s)	52, 57, 174, 216, 408, 425, 461
FatI	CATG	3 cut(s)	55, 406, 459
Fnu4HI	GCNGC	1 cut(s)	146
FokI	GGATG	1 cut(s)	287
Fsp4HI	GCNGC	1 cut(s)	146
FspBI	CTAG	1 cut(s)	335
GluI	GCNGC	1 cut(s)	146
HaeIII	GGCC	1 cut(s)	545
HapII	CCGG	1 cut(s)	348
Hin1II	CATG	3 cut(s)	59, 410, 463
HinfI	GANTC	5 cut(s)	86, 188, 257, 343, 518
HpaII	CCGG	1 cut(s)	348
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	2 cut(s)	27, 355
Hpy188III	TCNNGA	1 cut(s)	254
Hpy8I	GTNNAC	1 cut(s)	127
HpyAV	CCTTC	2 cut(s)	22, 465
HpyCH4III	ACNGT	3 cut(s)	287, 320, 374
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	6 cut(s)	20, 127, 148, 247, 388, 402
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 47
HpyF3I	CTNAG	2 cut(s)	141, 151
HpySE526I	ACGT	1 cut(s)	201
Hsp92II	CATG	3 cut(s)	59, 410, 463
Kzo9I	GATC	3 cut(s)	350, 426, 532
LmnI	GCTCC	1 cut(s)	98
LpnPI	CCDG	8 cut(s)	21, 138, 145, 223, 267, 323, 361, 482
Lsp1109I	GCAGC	1 cut(s)	132
LweI	GCATC	2 cut(s)	41, 375
MaeI	CTAG	1 cut(s)	335
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	2 cut(s)	265, 368
MalI	GATC	3 cut(s)	352, 428, 534
MboI	GATC	3 cut(s)	350, 426, 532
MboII	GAAGA	1 cut(s)	221
MflI	RGATCY	1 cut(s)	532
MhlI	GDGCHC	3 cut(s)	103, 129, 244
MluCI	AATT	4 cut(s)	74, 249, 356, 522
MnlI	CCTC	1 cut(s)	508
MspI	CCGG	1 cut(s)	348
MspR9I	CCNGG	1 cut(s)	348
MwoI	GCNNNNNNNGC	2 cut(s)	38, 47
NciI	CCSGG	1 cut(s)	348
NdeII	GATC	3 cut(s)	350, 426, 532
NlaIII	CATG	3 cut(s)	59, 410, 463
NmuCI	GTSAC	1 cut(s)	368
NspI	RCATGY	1 cut(s)	410
PfeI	GAWTC	5 cut(s)	86, 188, 257, 343, 518
PfoI	TCCNGGA	1 cut(s)	346
PkrI	GCNGC	1 cut(s)	147
PsuI	RGATCY	1 cut(s)	532
RsaI	GTAC	1 cut(s)	330
RsaNI	GTAC	1 cut(s)	329
SatI	GCNGC	1 cut(s)	146
Sau3AI	GATC	3 cut(s)	350, 426, 532
ScrFI	CCNGG	1 cut(s)	348
SduI	GDGCHC	3 cut(s)	103, 129, 244
SetI	ASST	6 cut(s)	147, 204, 272, 303, 448, 457
SfaNI	GCATC	2 cut(s)	41, 375
Sse9I	AATT	4 cut(s)	74, 249, 356, 522
SsiI	CCGC	1 cut(s)	14
SspMI	CTAG	1 cut(s)	335
StyD4I	CCNGG	1 cut(s)	346
StyI	CCWWGG	2 cut(s)	270, 297
TaaI	ACNGT	3 cut(s)	287, 320, 374
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	2 cut(s)	165, 383
TaqII	GACCGA	1 cut(s)	183
TasI	AATT	4 cut(s)	74, 249, 356, 522
TatI	WGTACW	1 cut(s)	328
TfiI	GAWTC	5 cut(s)	86, 188, 257, 343, 518
TscAI	CASTG	1 cut(s)	249
TseFI	GTSAC	1 cut(s)	368
TseI	GCWGC	1 cut(s)	145
Tsp45I	GTSAC	1 cut(s)	368
TspDTI	ATGAA	1 cut(s)	195
TspRI	CASTG	1 cut(s)	249
VneI	GTGCAC	1 cut(s)	125
XapI	RAATTY	2 cut(s)	249, 356
XceI	RCATGY	1 cut(s)	410
XspI	CTAG	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.