SWIM zinc finger family protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G60560 AT1G60560 AT1G60560 |
| fragaria_vesca | FvH4_1g11391 |
| malus_domestica | MD14G1040800.v1.1 |
| prunus_persica | Prupe.7G172200_v2.0.a1 |
| pyrus_communis | pycom14g03460 |
| rosa_chinensis | RchiOBHm_Chr2g0098931 RchiOBHm_Chr2g0098941 RchiOBHm_Chr4g0406971 RchiOBHm_Chr7g0185761 RchiOBHm_Chr7g0219821 |
| rosa_laevigata | RLG00000016835 RLG00000036043 RLG00000036045 |
| rosa_multiflora | Rmu_sc0000600.1_g000016 Rmu_sc0000936.1_g000018 Rmu_sc0000936.1_g000019 Rmu_sc0007649.1_g000004 Rmu_sc0009833.1_g000012 Rmu_sc0027115.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00011620 Rroxscaffold_2G00143560 |
| rosa_rugosa | Rorug03G0254100 Rorug03G0293700 Rorug04G0076000 Rorug04G0076100 Rorug04G0076200 |
| rosa_samantha | Rh4AG141800 Rh4BG138900 Rh4DG135900 Rh5AG453500 Rh5AG453600 Rh5DG485000 Rh7DG249200 |
| rosa_wichuraiana | Rw0G006010 Rw2G009560 Rw4G011550 Rw5G042350 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1295, 2093 |
| Acc16I | TGCGCA | 1 cut(s) | 1194 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1170 |
| AccIII | TCCGGA | 1 cut(s) | 860 |
| AciI | CCGC | 6 cut(s) | 44, 814, 1040, 1420, 1708, 1929 |
| AclWI | GGATC | 3 cut(s) | 201, 502, 734 |
| AcoI | YGGCCR | 2 cut(s) | 301, 2221 |
| AcsI | RAATTY | 5 cut(s) | 208, 590, 1159, 1811, 2079 |
| AcuI | CTGAAG | 2 cut(s) | 201, 768 |
| AcyI | GRCGYC | 2 cut(s) | 941, 1114 |
| AdeI | CACNNNGTG | 1 cut(s) | 1170 |
| AfaI | GTAC | 5 cut(s) | 134, 841, 1237, 1406, 2289 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1170, 1831, 1946 |
| AflIII | ACRYGT | 1 cut(s) | 2332 |
| AgsI | TTSAA | 9 cut(s) | 90, 629, 770, 775, 1093, 1400, 1729, 2264, 2279 |
| AjnI | CCWGG | 5 cut(s) | 490, 649, 687, 1691, 1939 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 157, 189, 1827, 1859 |
| AluBI | AGCT | 8 cut(s) | 248, 475, 664, 1009, 1223, 1353, 1677, 1748 |
| AluI | AGCT | 8 cut(s) | 248, 475, 664, 1009, 1223, 1353, 1677, 1748 |
| Alw21I | GWGCWC | 4 cut(s) | 283, 860, 1355, 1679 |
| Alw26I | GTCTC | 5 cut(s) | 458, 532, 809, 1428, 2111 |
| AlwI | GGATC | 3 cut(s) | 201, 502, 734 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2388 |
| Ama87I | CYCGRG | 3 cut(s) | 951, 1299, 2364 |
| Aor13HI | TCCGGA | 1 cut(s) | 860 |
| AoxI | GGCC | 8 cut(s) | 301, 959, 974, 1055, 1689, 1694, 1763, 2221 |
| ApeKI | GCWGC | 3 cut(s) | 372, 472, 1037 |
| ApoI | RAATTY | 5 cut(s) | 208, 590, 1159, 1811, 2079 |
| AseI | ATTAAT | 2 cut(s) | 849, 2258 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2034 |
| AspLEI | GCGC | 2 cut(s) | 656, 1195 |
| AspS9I | GGNCC | 5 cut(s) | 1056, 1689, 1695, 1742, 1764 |
| AsuC2I | CCSGG | 1 cut(s) | 723 |
| AsuHPI | GGTGA | 2 cut(s) | 489, 1259 |
| AsuNHI | GCTAGC | 1 cut(s) | 2137 |
| AvaI | CYCGRG | 3 cut(s) | 951, 1299, 2364 |
| AvaII | GGWCC | 1 cut(s) | 1742 |
| BalI | TGGCCA | 1 cut(s) | 2223 |
| BanII | GRGCYC | 2 cut(s) | 1355, 1679 |
| BbsI | GAAGAC | 2 cut(s) | 936, 1974 |
| Bbv12I | GWGCWC | 4 cut(s) | 283, 860, 1355, 1679 |
| BbvI | GCAGC | 3 cut(s) | 359, 484, 1024 |
| BccI | CCATC | 8 cut(s) | 105, 513, 720, 940, 1192, 1614, 1940, 2003 |
| BciT130I | CCWGG | 5 cut(s) | 492, 651, 689, 1693, 1941 |
| BciVI | GTATCC | 1 cut(s) | 2058 |
| BclI | TGATCA | 2 cut(s) | 1387, 2376 |
| BcnI | CCSGG | 1 cut(s) | 723 |
| BcoDI | GTCTC | 5 cut(s) | 458, 532, 809, 1428, 2111 |
| BfaI | CTAG | 3 cut(s) | 476, 1224, 2138 |
| BfmI | CTRYAG | 3 cut(s) | 385, 470, 1777 |
| BfuI | GTATCC | 1 cut(s) | 2058 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 967, 1562 |
| BglII | AGATCT | 1 cut(s) | 1630 |
| BisI | GCNGC | 4 cut(s) | 45, 373, 473, 1038 |
| BlsI | GCNGC | 4 cut(s) | 46, 374, 474, 1039 |
| BmcAI | AGTACT | 1 cut(s) | 134 |
| Bme1390I | CCNGG | 6 cut(s) | 492, 651, 689, 723, 1693, 1941 |
| Bme18I | GGWCC | 1 cut(s) | 1742 |
| BmeT110I | CYCGRG | 3 cut(s) | 951, 1299, 2364 |
| BmgT120I | GGNCC | 5 cut(s) | 1056, 1689, 1695, 1742, 1764 |
| BmiI | GGNNCC | 4 cut(s) | 1058, 1418, 1697, 1743 |
| BmrFI | CCNGG | 6 cut(s) | 492, 651, 689, 723, 1693, 1941 |
| BmrI | ACTGGG | 2 cut(s) | 682, 1525 |
| BmsI | GCATC | 4 cut(s) | 446, 1300, 1695, 1976 |
| BmtI | GCTAGC | 1 cut(s) | 2141 |
| BmuI | ACTGGG | 2 cut(s) | 682, 1525 |
| BpiI | GAAGAC | 2 cut(s) | 936, 1974 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1339, 1371 |
| BpmI | CTGGAG | 1 cut(s) | 1962 |
| Bpu10I | CCTNAGC | 2 cut(s) | 660, 981 |
| BpuEI | CTTGAG | 3 cut(s) | 746, 1127, 1342 |
| BpuMI | CCSGG | 1 cut(s) | 723 |
| BsaAI | YACGTR | 1 cut(s) | 2069 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1629 |
| BsaHI | GRCGYC | 2 cut(s) | 941, 1114 |
| BsaI | GGTCTC | 1 cut(s) | 1428 |
| BsaJI | CCNNGG | 4 cut(s) | 284, 490, 877, 2321 |
| BsaWI | WCCGGW | 1 cut(s) | 860 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1945, 1975, 2342, 2372 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1170, 1831, 1946 |
| Bse118I | RCCGGY | 1 cut(s) | 303 |
| Bse1I | ACTGG | 5 cut(s) | 677, 1520, 1577, 1914, 2218 |
| Bse3DI | GCAATG | 3 cut(s) | 570, 739, 871 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1629 |
| BseAI | TCCGGA | 1 cut(s) | 860 |
| BseBI | CCWGG | 5 cut(s) | 492, 651, 689, 1693, 1941 |
| BseDI | CCNNGG | 4 cut(s) | 284, 490, 877, 2321 |
| BseGI | GGATG | 7 cut(s) | 461, 731, 1465, 1606, 1991, 2014, 2236 |
| BseJI | GATNNNNATC | 1 cut(s) | 1629 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1170, 1831, 1946 |
| BseMI | GCAATG | 3 cut(s) | 570, 739, 871 |
| BseMII | CTCAG | 5 cut(s) | 161, 453, 822, 977, 995 |
| BseNI | ACTGG | 5 cut(s) | 677, 1520, 1577, 1914, 2218 |
| BseRI | GAGGAG | 2 cut(s) | 1305, 1363 |
| BseXI | GCAGC | 3 cut(s) | 359, 484, 1024 |
| BsgI | GTGCAG | 1 cut(s) | 2168 |
| BshFI | GGCC | 8 cut(s) | 303, 961, 976, 1057, 1691, 1696, 1765, 2223 |
| BsiHKAI | GWGCWC | 4 cut(s) | 283, 860, 1355, 1679 |
| BsiHKCI | CYCGRG | 3 cut(s) | 951, 1299, 2364 |
| BsiSI | CCGG | 3 cut(s) | 304, 723, 861 |
| BslFI | GGGAC | 3 cut(s) | 146, 432, 1755 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1170, 1831, 1946 |
| BsmAI | GTCTC | 5 cut(s) | 458, 532, 809, 1428, 2111 |
| BsmBI | CGTCTC | 1 cut(s) | 532 |
| BsmFI | GGGAC | 3 cut(s) | 146, 432, 1755 |
| BsmI | GAATGC | 3 cut(s) | 485, 788, 1989 |
| BsnI | GGCC | 8 cut(s) | 303, 961, 976, 1057, 1691, 1696, 1765, 2223 |
| Bso31I | GGTCTC | 1 cut(s) | 1428 |
| BsoBI | CYCGRG | 3 cut(s) | 951, 1299, 2364 |
| Bsp1286I | GDGCHC | 4 cut(s) | 283, 860, 1355, 1679 |
| Bsp13I | TCCGGA | 1 cut(s) | 860 |
| Bsp1407I | TGTACA | 1 cut(s) | 2287 |
| Bsp143I | GATC | 6 cut(s) | 193, 494, 739, 1387, 1630, 2376 |
| Bsp19I | CCATGG | 2 cut(s) | 284, 877 |
| BspACI | CCGC | 6 cut(s) | 44, 814, 1040, 1420, 1708, 1929 |
| BspANI | GGCC | 8 cut(s) | 303, 961, 976, 1057, 1691, 1696, 1765, 2223 |
| BspCNI | CTCAG | 5 cut(s) | 160, 454, 821, 976, 994 |
| BspEI | TCCGGA | 1 cut(s) | 860 |
| BspHI | TCATGA | 1 cut(s) | 1900 |
| BspLI | GGNNCC | 4 cut(s) | 1058, 1418, 1697, 1743 |
| BspMAI | CTGCAG | 2 cut(s) | 389, 474 |
| BspOI | GCTAGC | 1 cut(s) | 2141 |
| BspPI | GGATC | 3 cut(s) | 201, 502, 734 |
| BspTNI | GGTCTC | 1 cut(s) | 1428 |
| BsrDI | GCAATG | 3 cut(s) | 570, 739, 871 |
| BsrFI | RCCGGY | 1 cut(s) | 303 |
| BsrGI | TGTACA | 1 cut(s) | 2287 |
| BsrI | ACTGG | 5 cut(s) | 677, 1520, 1577, 1914, 2218 |
| BssAI | RCCGGY | 1 cut(s) | 303 |
| BssECI | CCNNGG | 4 cut(s) | 284, 490, 877, 2321 |
| BssMI | GATC | 6 cut(s) | 193, 494, 739, 1387, 1630, 2376 |
| BssNI | GRCGYC | 2 cut(s) | 941, 1114 |
| BssT1I | CCWWGG | 3 cut(s) | 284, 877, 2321 |
| Bst2UI | CCWGG | 5 cut(s) | 492, 651, 689, 1693, 1941 |
| Bst4CI | ACNGT | 5 cut(s) | 510, 1168, 1404, 1887, 1973 |
| Bst6I | CTCTTC | 1 cut(s) | 1426 |
| BstACI | GRCGYC | 2 cut(s) | 941, 1114 |
| BstAUI | TGTACA | 1 cut(s) | 2287 |
| BstBAI | YACGTR | 1 cut(s) | 2069 |
| BstC8I | GCNNGC | 4 cut(s) | 312, 978, 1471, 2139 |
| BstDEI | CTNAG | 7 cut(s) | 147, 229, 462, 660, 808, 963, 981 |
| BstDSI | CCRYGG | 2 cut(s) | 284, 877 |
| BstEII | GGTNACC | 1 cut(s) | 2358 |
| BstF5I | GGATG | 7 cut(s) | 461, 731, 1465, 1606, 1991, 2014, 2236 |
| BstHHI | GCGC | 2 cut(s) | 656, 1195 |
| BstKTI | GATC | 6 cut(s) | 196, 497, 742, 1390, 1633, 2379 |
| BstMAI | GTCTC | 5 cut(s) | 458, 532, 809, 1428, 2111 |
| BstMBI | GATC | 6 cut(s) | 193, 494, 739, 1387, 1630, 2376 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 50, 947, 967, 1199, 1310, 1475, 1562 |
| BstNI | CCWGG | 5 cut(s) | 492, 651, 689, 1693, 1941 |
| BstNSI | RCATGY | 2 cut(s) | 621, 2336 |
| BstPI | GGTNACC | 1 cut(s) | 2358 |
| BstSCI | CCNGG | 6 cut(s) | 490, 649, 687, 721, 1691, 1939 |
| BstSFI | CTRYAG | 3 cut(s) | 385, 470, 1777 |
| BstV1I | GCAGC | 3 cut(s) | 359, 484, 1024 |
| BstV2I | GAAGAC | 2 cut(s) | 936, 1974 |
| BstX2I | RGATCY | 1 cut(s) | 1630 |
| BstYI | RGATCY | 1 cut(s) | 1630 |
| BsuI | GTATCC | 1 cut(s) | 2058 |
| BsuRI | GGCC | 8 cut(s) | 303, 961, 976, 1057, 1691, 1696, 1765, 2223 |
| BtgI | CCRYGG | 2 cut(s) | 284, 877 |
| BtsCI | GGATG | 7 cut(s) | 461, 731, 1465, 1606, 1991, 2014, 2236 |
| BtsI | GCAGTG | 2 cut(s) | 394, 467 |
| BtsIMutI | CAGTG | 7 cut(s) | 177, 394, 467, 860, 899, 971, 1513 |
| Cac8I | GCNNGC | 4 cut(s) | 312, 978, 1471, 2139 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2388 |
| CciI | TCATGA | 1 cut(s) | 1900 |
| CfoI | GCGC | 2 cut(s) | 656, 1195 |
| Cfr10I | RCCGGY | 1 cut(s) | 303 |
| Cfr13I | GGNCC | 5 cut(s) | 1056, 1689, 1695, 1742, 1764 |
| CseI | GACGC | 2 cut(s) | 930, 1103 |
| Csp6I | GTAC | 5 cut(s) | 133, 840, 1236, 1405, 2288 |
| CviQI | GTAC | 5 cut(s) | 133, 840, 1236, 1405, 2288 |
| DdeI | CTNAG | 7 cut(s) | 147, 229, 462, 660, 808, 963, 981 |
| DpnI | GATC | 6 cut(s) | 195, 496, 741, 1389, 1632, 2378 |
| DpnII | GATC | 6 cut(s) | 193, 494, 739, 1387, 1630, 2376 |
| DraIII | CACNNNGTG | 1 cut(s) | 1170 |
| EaeI | YGGCCR | 2 cut(s) | 301, 2221 |
| Eam1104I | CTCTTC | 1 cut(s) | 1426 |
| EarI | CTCTTC | 1 cut(s) | 1426 |
| Ecl136II | GAGCTC | 2 cut(s) | 1353, 1677 |
| Eco130I | CCWWGG | 3 cut(s) | 284, 877, 2321 |
| Eco24I | GRGCYC | 2 cut(s) | 1355, 1679 |
| Eco31I | GGTCTC | 1 cut(s) | 1428 |
| Eco47I | GGWCC | 1 cut(s) | 1742 |
| Eco53kI | GAGCTC | 2 cut(s) | 1353, 1677 |
| Eco57I | CTGAAG | 2 cut(s) | 201, 768 |
| Eco88I | CYCGRG | 3 cut(s) | 951, 1299, 2364 |
| Eco91I | GGTNACC | 1 cut(s) | 2358 |
| EcoICRI | GAGCTC | 2 cut(s) | 1353, 1677 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1056, 1695 |
| EcoO65I | GGTNACC | 1 cut(s) | 2358 |
| EcoRII | CCWGG | 5 cut(s) | 490, 649, 687, 1691, 1939 |
| EcoT14I | CCWWGG | 3 cut(s) | 284, 877, 2321 |
| EcoT22I | ATGCAT | 2 cut(s) | 1292, 1991 |
| EcoT38I | GRGCYC | 2 cut(s) | 1355, 1679 |
| ErhI | CCWWGG | 3 cut(s) | 284, 877, 2321 |
| Esp3I | CGTCTC | 1 cut(s) | 532 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1827, 1859 |
| FaqI | GGGAC | 3 cut(s) | 146, 432, 1755 |
| FauI | CCCGC | 1 cut(s) | 1922 |
| FauNDI | CATATG | 3 cut(s) | 754, 2026, 2226 |
| FbaI | TGATCA | 2 cut(s) | 1387, 2376 |
| Fnu4HI | GCNGC | 4 cut(s) | 45, 373, 473, 1038 |
| FokI | GGATG | 7 cut(s) | 468, 738, 1472, 1593, 1998, 2021, 2243 |
| FriOI | GRGCYC | 2 cut(s) | 1355, 1679 |
| Fsp4HI | GCNGC | 4 cut(s) | 45, 373, 473, 1038 |
| FspBI | CTAG | 3 cut(s) | 476, 1224, 2138 |
| FspI | TGCGCA | 1 cut(s) | 1194 |
| GlaI | GCGC | 2 cut(s) | 655, 1194 |
| GluI | GCNGC | 4 cut(s) | 45, 373, 473, 1038 |
| GsuI | CTGGAG | 1 cut(s) | 1962 |
| HaeIII | GGCC | 8 cut(s) | 303, 961, 976, 1057, 1691, 1696, 1765, 2223 |
| HapII | CCGG | 3 cut(s) | 304, 723, 861 |
| HgaI | GACGC | 2 cut(s) | 930, 1103 |
| HhaI | GCGC | 2 cut(s) | 656, 1195 |
| Hin1I | GRCGYC | 2 cut(s) | 941, 1114 |
| Hin6I | GCGC | 2 cut(s) | 654, 1193 |
| HinP1I | GCGC | 2 cut(s) | 654, 1193 |
| HincII | GTYRAC | 4 cut(s) | 343, 988, 1027, 1666 |
| HindII | GTYRAC | 4 cut(s) | 343, 988, 1027, 1666 |
| HinfI | GANTC | 3 cut(s) | 1143, 1283, 2180 |
| HpaII | CCGG | 3 cut(s) | 304, 723, 861 |
| HphI | GGTGA | 2 cut(s) | 489, 1259 |
| Hpy166II | GTNNAC | 8 cut(s) | 343, 988, 1004, 1027, 1138, 1173, 1513, 1666 |
| Hpy188I | TCNGA | 6 cut(s) | 15, 150, 463, 646, 1891, 2064 |
| Hpy8I | GTNNAC | 8 cut(s) | 343, 988, 1004, 1027, 1138, 1173, 1513, 1666 |
| HpyAV | CCTTC | 8 cut(s) | 132, 283, 446, 575, 1372, 1457, 1755, 1829 |
| HpyCH4III | ACNGT | 5 cut(s) | 510, 1168, 1404, 1887, 1973 |
| HpyCH4IV | ACGT | 1 cut(s) | 2068 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 50, 947, 967, 1199, 1310, 1475, 1562 |
| HpyF3I | CTNAG | 7 cut(s) | 147, 229, 462, 660, 808, 963, 981 |
| HpySE526I | ACGT | 1 cut(s) | 2068 |
| Hsp92I | GRCGYC | 2 cut(s) | 941, 1114 |
| HspAI | GCGC | 2 cut(s) | 654, 1193 |
| Kpn2I | TCCGGA | 1 cut(s) | 860 |
| Ksp22I | TGATCA | 2 cut(s) | 1387, 2376 |
| Kzo9I | GATC | 6 cut(s) | 193, 494, 739, 1387, 1630, 2376 |
| LmnI | GCTCC | 5 cut(s) | 278, 863, 1318, 1350, 1483 |
| Lsp1109I | GCAGC | 3 cut(s) | 359, 484, 1024 |
| LweI | GCATC | 4 cut(s) | 446, 1300, 1695, 1976 |
| MaeI | CTAG | 3 cut(s) | 476, 1224, 2138 |
| MaeII | ACGT | 1 cut(s) | 2068 |
| MaeIII | GTNAC | 7 cut(s) | 548, 896, 1115, 1520, 1873, 2307, 2358 |
| MalI | GATC | 6 cut(s) | 195, 496, 741, 1389, 1632, 2378 |
| MboI | GATC | 6 cut(s) | 193, 494, 739, 1387, 1630, 2376 |
| MflI | RGATCY | 1 cut(s) | 1630 |
| MhlI | GDGCHC | 4 cut(s) | 283, 860, 1355, 1679 |
| MlsI | TGGCCA | 1 cut(s) | 2223 |
| MluNI | TGGCCA | 1 cut(s) | 2223 |
| MmeI | TCCRAC | 1 cut(s) | 1931 |
| Mox20I | TGGCCA | 1 cut(s) | 2223 |
| Mph1103I | ATGCAT | 2 cut(s) | 1292, 1991 |
| MroI | TCCGGA | 1 cut(s) | 860 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2034 |
| MscI | TGGCCA | 1 cut(s) | 2223 |
| MseI | TTAA | 7 cut(s) | 356, 849, 1044, 1122, 1241, 2112, 2258 |
| MslI | CAYNNNNRTG | 3 cut(s) | 876, 2229, 2337 |
| Msp20I | TGGCCA | 1 cut(s) | 2223 |
| MspA1I | CMGCKG | 2 cut(s) | 248, 1009 |
| MspI | CCGG | 3 cut(s) | 304, 723, 861 |
| MspR9I | CCNGG | 6 cut(s) | 492, 651, 689, 723, 1693, 1941 |
| Mva1269I | GAATGC | 3 cut(s) | 485, 788, 1989 |
| MvaI | CCWGG | 5 cut(s) | 492, 651, 689, 1693, 1941 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 50, 947, 967, 1199, 1310, 1475, 1562 |
| NciI | CCSGG | 1 cut(s) | 723 |
| NcoI | CCATGG | 2 cut(s) | 284, 877 |
| NdeI | CATATG | 3 cut(s) | 754, 2026, 2226 |
| NdeII | GATC | 6 cut(s) | 193, 494, 739, 1387, 1630, 2376 |
| NheI | GCTAGC | 1 cut(s) | 2137 |
| NlaIV | GGNNCC | 4 cut(s) | 1058, 1418, 1697, 1743 |
| NmeAIII | GCCGAG | 1 cut(s) | 518 |
| NmuCI | GTSAC | 2 cut(s) | 548, 1115 |
| NsbI | TGCGCA | 1 cut(s) | 1194 |
| NsiI | ATGCAT | 2 cut(s) | 1292, 1991 |
| NspI | RCATGY | 2 cut(s) | 621, 2336 |
| PaeR7I | CTCGAG | 2 cut(s) | 951, 2364 |
| PagI | TCATGA | 1 cut(s) | 1900 |
| PciI | ACATGT | 1 cut(s) | 2332 |
| PctI | GAATGC | 3 cut(s) | 485, 788, 1989 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2034 |
| PfeI | GAWTC | 3 cut(s) | 1143, 1283, 2180 |
| PflFI | GACNNNGTC | 1 cut(s) | 423 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1170 |
| PfoI | TCCNGGA | 1 cut(s) | 1939 |
| PkrI | GCNGC | 4 cut(s) | 46, 374, 474, 1039 |
| Ppu21I | YACGTR | 1 cut(s) | 2069 |
| PscI | ACATGT | 1 cut(s) | 2332 |
| PshBI | ATTAAT | 2 cut(s) | 849, 2258 |
| PsiI | TTATAA | 2 cut(s) | 1295, 2093 |
| Psp124BI | GAGCTC | 2 cut(s) | 1355, 1679 |
| Psp6I | CCWGG | 5 cut(s) | 490, 649, 687, 1691, 1939 |
| PspEI | GGTNACC | 1 cut(s) | 2358 |
| PspGI | CCWGG | 5 cut(s) | 490, 649, 687, 1691, 1939 |
| PspN4I | GGNNCC | 4 cut(s) | 1058, 1418, 1697, 1743 |
| PspPI | GGNCC | 5 cut(s) | 1056, 1689, 1695, 1742, 1764 |
| PstI | CTGCAG | 2 cut(s) | 389, 474 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2388 |
| PsuI | RGATCY | 1 cut(s) | 1630 |
| PsyI | GACNNNGTC | 1 cut(s) | 423 |
| PvuII | CAGCTG | 2 cut(s) | 248, 1009 |
| RsaI | GTAC | 5 cut(s) | 134, 841, 1237, 1406, 2289 |
| RsaNI | GTAC | 5 cut(s) | 133, 840, 1236, 1405, 2288 |
| RseI | CAYNNNNRTG | 3 cut(s) | 876, 2229, 2337 |
| SacI | GAGCTC | 2 cut(s) | 1355, 1679 |
| SaqAI | TTAA | 7 cut(s) | 356, 849, 1044, 1122, 1241, 2112, 2258 |
| SatI | GCNGC | 4 cut(s) | 45, 373, 473, 1038 |
| Sau3AI | GATC | 6 cut(s) | 193, 494, 739, 1387, 1630, 2376 |
| Sau96I | GGNCC | 5 cut(s) | 1056, 1689, 1695, 1742, 1764 |
| ScaI | AGTACT | 1 cut(s) | 134 |
| ScrFI | CCNGG | 6 cut(s) | 492, 651, 689, 723, 1693, 1941 |
| SduI | GDGCHC | 4 cut(s) | 283, 860, 1355, 1679 |
| SfaNI | GCATC | 4 cut(s) | 446, 1300, 1695, 1976 |
| SfcI | CTRYAG | 3 cut(s) | 385, 470, 1777 |
| Sfr274I | CTCGAG | 2 cut(s) | 951, 2364 |
| SinI | GGWCC | 1 cut(s) | 1742 |
| SlaI | CTCGAG | 2 cut(s) | 951, 2364 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 876, 2229, 2337 |
| SmlI | CTYRAG | 5 cut(s) | 761, 951, 1106, 1321, 2364 |
| SmoI | CTYRAG | 5 cut(s) | 761, 951, 1106, 1321, 2364 |
| SsiI | CCGC | 6 cut(s) | 44, 814, 1040, 1420, 1708, 1929 |
| SspI | AATATT | 2 cut(s) | 1370, 2098 |
| SspMI | CTAG | 3 cut(s) | 476, 1224, 2138 |
| SstI | GAGCTC | 2 cut(s) | 1355, 1679 |
| StyD4I | CCNGG | 6 cut(s) | 490, 649, 687, 721, 1691, 1939 |
| StyI | CCWWGG | 3 cut(s) | 284, 877, 2321 |
| TaaI | ACNGT | 5 cut(s) | 510, 1168, 1404, 1887, 1973 |
| TaiI | ACGT | 1 cut(s) | 2071 |
| TaqI | TCGA | 9 cut(s) | 129, 394, 601, 738, 952, 1128, 1532, 2193, 2365 |
| TatI | WGTACW | 3 cut(s) | 132, 839, 2287 |
| TauI | GCSGC | 1 cut(s) | 47 |
| TfiI | GAWTC | 3 cut(s) | 1143, 1283, 2180 |
| Tru1I | TTAA | 7 cut(s) | 356, 849, 1044, 1122, 1241, 2112, 2258 |
| Tru9I | TTAA | 7 cut(s) | 356, 849, 1044, 1122, 1241, 2112, 2258 |
| TscAI | CASTG | 7 cut(s) | 184, 394, 474, 860, 899, 971, 1520 |
| TseFI | GTSAC | 2 cut(s) | 548, 1115 |
| TseI | GCWGC | 3 cut(s) | 372, 472, 1037 |
| Tsp45I | GTSAC | 2 cut(s) | 548, 1115 |
| TspDTI | ATGAA | 9 cut(s) | 351, 425, 1224, 1275, 1443, 1476, 2043, 2091, 2327 |
| TspGWI | ACGGA | 2 cut(s) | 206, 882 |
| TspRI | CASTG | 7 cut(s) | 184, 394, 474, 860, 899, 971, 1520 |
| Tth111I | GACNNNGTC | 1 cut(s) | 423 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1170 |
| VpaK11BI | GGWCC | 1 cut(s) | 1742 |
| VspI | ATTAAT | 2 cut(s) | 849, 2258 |
| XapI | RAATTY | 5 cut(s) | 208, 590, 1159, 1811, 2079 |
| XceI | RCATGY | 2 cut(s) | 621, 2336 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1488 |
| XhoI | CTCGAG | 2 cut(s) | 951, 2364 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2034 |
| XspI | CTAG | 3 cut(s) | 476, 1224, 2138 |
| ZrmI | AGTACT | 1 cut(s) | 134 |
| Zsp2I | ATGCAT | 2 cut(s) | 1292, 1991 |