Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000936.1

Orthogroup ID

OG0002808

Physical Location & Seq

Genomic Coordinates Forward (+)

89279 .. 90775

Gene Structure 1497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000936.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

atggatattgttgaatctatacaagatctcccagttcaggatccaccagtggaggagttctcctctgctgatttgacttggaccaaatttggcaattccgagaatcatgatgatgcagccctcattccttatgaccgagtagacgaatttataatcggtgaatgctcaaatttagagtgtccaacgcgatttcatattgagaggggaagaaaaagaaagaagggcagcttaaaggagtacgctgatgatgagtattcggaatataagctgtattggtgttcttttggtcctgaaaattatggggaaggtgggggtattttacctagcagaagatatcgactcaacacccgcaatcgtgctgctagacctcaatctatgcggggctgtacatgcaattttgtggtgaagcgtctctatgcacgtccatcacttgcactacttatctatcatcagaggcgtcatgtgaacaaatctggttttgtttgccatggcccacttgatggagatgccattgggcccggagccaagacagttccatatatctgtaatgagattcaacaacaaacaatgtctatgatctatcaattggtacaacatgcactccctgttgcatggatcatcacacgcagcttttcaaagccagatgtgtttaaatggatgacagctctacttggtcgagctcgtagtgttgaacctggatggagggccagtgggtttttaattgatgatgcagcagctgagactgatcccatcaggcaagatgcccctctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

257

Amino Acids

29.21

Weight (kDa)

6.6

Isoelectric Point (pI)

53.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60560 AT1G60560 AT1G60560
fragaria_vesca	FvH4_1g11391
malus_domestica	MD14G1040800.v1.1
prunus_persica	Prupe.7G172200_v2.0.a1
pyrus_communis	pycom14g03460
rosa_chinensis	RchiOBHm_Chr2g0098931 RchiOBHm_Chr2g0098941 RchiOBHm_Chr4g0406971 RchiOBHm_Chr7g0185761 RchiOBHm_Chr7g0219821
rosa_laevigata	RLG00000016835 RLG00000036043 RLG00000036045
rosa_multiflora	Rmu_sc0000600.1_g000016 Rmu_sc0000936.1_g000018 Rmu_sc0000936.1_g000019 Rmu_sc0007649.1_g000004 Rmu_sc0009833.1_g000012 Rmu_sc0027115.1_g000002
rosa_roxburghii	Rroxscaffold_1G00011620 Rroxscaffold_2G00143560
rosa_rugosa	Rorug03G0254100 Rorug03G0293700 Rorug04G0076000 Rorug04G0076100 Rorug04G0076200
rosa_samantha	Rh4AG141800 Rh4BG138900 Rh4DG135900 Rh5AG453500 Rh5AG453600 Rh5DG485000 Rh7DG249200
rosa_wichuraiana	Rw0G006010 Rw2G009560 Rw4G011550 Rw5G042350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	152
AccB7I	CCANNNNNTGG	1 cut(s)	500
AccI	GTMKAC	1 cut(s)	141
AccII	CGCG	1 cut(s)	187
AciI	CCGC	2 cut(s)	349, 379
AclWI	GGATC	4 cut(s)	35, 48, 623, 740
AcsI	RAATTY	3 cut(s)	86, 146, 169
AcyI	GRCGYC	1 cut(s)	457
AfaI	GTAC	3 cut(s)	239, 388, 591
AfiI	CCNNNNNNNGG	2 cut(s)	37, 500
AgsI	TTSAA	4 cut(s)	14, 557, 636, 692
AjiI	CACGTC	1 cut(s)	422
AjnI	CCWGG	1 cut(s)	694
AluBI	AGCT	6 cut(s)	228, 268, 630, 665, 680, 737
AluI	AGCT	6 cut(s)	228, 268, 630, 665, 680, 737
Alw21I	GWGCWC	1 cut(s)	682
Alw26I	GTCTC	2 cut(s)	416, 734
AlwI	GGATC	4 cut(s)	35, 48, 623, 740
AlwNI	CAGNNNCTG	1 cut(s)	737
AoxI	GGCC	3 cut(s)	490, 515, 705
ApaI	GGGCCC	1 cut(s)	519
ApeKI	GCWGC	6 cut(s)	116, 225, 359, 627, 731, 734
ApoI	RAATTY	3 cut(s)	86, 146, 169
AspS9I	GGNCC	6 cut(s)	81, 287, 491, 515, 516, 705
AsuC2I	CCSGG	1 cut(s)	519
AsuHPI	GGTGA	2 cut(s)	170, 415
AvaII	GGWCC	2 cut(s)	81, 287
BaeGI	GKGCMC	1 cut(s)	519
BamHI	GGATCC	1 cut(s)	40
BanII	GRGCYC	2 cut(s)	519, 682
Bbv12I	GWGCWC	1 cut(s)	682
BbvI	GCAGC	6 cut(s)	128, 237, 346, 639, 743, 746
BccI	CCATC	4 cut(s)	433, 494, 693, 758
BciT130I	CCWGG	1 cut(s)	696
BcnI	CCSGG	1 cut(s)	519
BcoDI	GTCTC	2 cut(s)	416, 734
BfaI	CTAG	2 cut(s)	324, 363
BglII	AGATCT	1 cut(s)	25
BisI	GCNGC	6 cut(s)	117, 226, 360, 628, 732, 735
BlsI	GCNGC	6 cut(s)	118, 227, 361, 629, 733, 736
Bme1390I	CCNGG	2 cut(s)	519, 696
Bme18I	GGWCC	2 cut(s)	81, 287
BmgBI	CACGTC	1 cut(s)	422
BmgT120I	GGNCC	6 cut(s)	81, 287, 491, 515, 516, 705
BmiI	GGNNCC	3 cut(s)	42, 517, 523
BmrFI	CCNGG	2 cut(s)	519, 696
BmrI	ACTGGG	1 cut(s)	26
BmsI	GCATC	4 cut(s)	103, 496, 718, 751
BmuI	ACTGGG	1 cut(s)	26
BplI	GAGNNNNNCTC	4 cut(s)	44, 76, 47, 79
BpuMI	CCSGG	1 cut(s)	519
BsaHI	GRCGYC	1 cut(s)	457
BsaJI	CCNNGG	1 cut(s)	487
BsaXI	ACNNNNNCTCC	6 cut(s)	12, 42, 585, 615, 694, 724
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 500
Bse1I	ACTGG	3 cut(s)	32, 47, 708
BseBI	CCWGG	1 cut(s)	696
BseDI	CCNNGG	1 cut(s)	487
BseGI	GGATG	2 cut(s)	663, 704
BseLI	CCNNNNNNNGG	2 cut(s)	37, 500
BseMII	CTCAG	1 cut(s)	729
BseNI	ACTGG	3 cut(s)	32, 47, 708
BseRI	GAGGAG	2 cut(s)	52, 68
BseSI	GKGCMC	1 cut(s)	519
BseXI	GCAGC	6 cut(s)	128, 237, 346, 639, 743, 746
Bsh1236I	CGCG	1 cut(s)	187
BshFI	GGCC	3 cut(s)	492, 517, 707
BsiHKAI	GWGCWC	1 cut(s)	682
BsiSI	CCGG	1 cut(s)	519
BslI	CCNNNNNNNGG	2 cut(s)	37, 500
BsmAI	GTCTC	2 cut(s)	416, 734
BsmBI	CGTCTC	1 cut(s)	416
BsmI	GAATGC	1 cut(s)	167
BsnI	GGCC	3 cut(s)	492, 517, 707
Bsp120I	GGGCCC	1 cut(s)	515
Bsp1286I	GDGCHC	2 cut(s)	519, 682
Bsp1407I	TGTACA	1 cut(s)	386
Bsp143I	GATC	5 cut(s)	25, 40, 576, 615, 745
Bsp19I	CCATGG	1 cut(s)	487
BspACI	CCGC	2 cut(s)	349, 379
BspANI	GGCC	3 cut(s)	492, 517, 707
BspCNI	CTCAG	1 cut(s)	730
BspFNI	CGCG	1 cut(s)	187
BspHI	TCATGA	1 cut(s)	106
BspLI	GGNNCC	3 cut(s)	42, 517, 523
BspPI	GGATC	4 cut(s)	35, 48, 623, 740
BsrGI	TGTACA	1 cut(s)	386
BsrI	ACTGG	3 cut(s)	32, 47, 708
BssECI	CCNNGG	1 cut(s)	487
BssMI	GATC	5 cut(s)	25, 40, 576, 615, 745
BssNI	GRCGYC	1 cut(s)	457
BssT1I	CCWWGG	1 cut(s)	487
Bst2UI	CCWGG	1 cut(s)	696
Bst4CI	ACNGT	1 cut(s)	532
BstACI	GRCGYC	1 cut(s)	457
BstAUI	TGTACA	1 cut(s)	386
BstDEI	CTNAG	1 cut(s)	738
BstDSI	CCRYGG	1 cut(s)	487
BstF5I	GGATG	2 cut(s)	663, 704
BstFNI	CGCG	1 cut(s)	187
BstKTI	GATC	5 cut(s)	28, 43, 579, 618, 748
BstMAI	GTCTC	2 cut(s)	416, 734
BstMBI	GATC	5 cut(s)	25, 40, 576, 615, 745
BstMWI	GCNNNNNNNGC	1 cut(s)	390
BstNI	CCWGG	1 cut(s)	696
BstNSI	RCATGY	2 cut(s)	393, 599
BstSCI	CCNGG	2 cut(s)	517, 694
BstSLI	GKGCMC	1 cut(s)	519
BstUI	CGCG	1 cut(s)	187
BstV1I	GCAGC	6 cut(s)	128, 237, 346, 639, 743, 746
BstX2I	RGATCY	2 cut(s)	25, 40
BstYI	RGATCY	2 cut(s)	25, 40
BsuRI	GGCC	3 cut(s)	492, 517, 707
BtgI	CCRYGG	1 cut(s)	487
BtrI	CACGTC	1 cut(s)	422
BtsCI	GGATG	2 cut(s)	663, 704
BtsIMutI	CAGTG	2 cut(s)	54, 715
CaiI	CAGNNNCTG	1 cut(s)	737
CciI	TCATGA	1 cut(s)	106
Cfr13I	GGNCC	6 cut(s)	81, 287, 491, 515, 516, 705
CseI	GACGC	2 cut(s)	398, 446
Csp6I	GTAC	3 cut(s)	238, 387, 590
CviAII	CATG	6 cut(s)	107, 390, 461, 488, 596, 612
CviQI	GTAC	3 cut(s)	238, 387, 590
DdeI	CTNAG	1 cut(s)	738
DpnI	GATC	5 cut(s)	27, 42, 578, 617, 747
DpnII	GATC	5 cut(s)	25, 40, 576, 615, 745
DraI	TTTAAA	1 cut(s)	652
Ecl136II	GAGCTC	1 cut(s)	680
Eco130I	CCWWGG	1 cut(s)	487
Eco24I	GRGCYC	2 cut(s)	519, 682
Eco32I	GATATC	1 cut(s)	335
Eco47I	GGWCC	2 cut(s)	81, 287
Eco53kI	GAGCTC	1 cut(s)	680
EcoICRI	GAGCTC	1 cut(s)	680
EcoRII	CCWGG	1 cut(s)	694
EcoRV	GATATC	1 cut(s)	335
EcoT14I	CCWWGG	1 cut(s)	487
EcoT38I	GRGCYC	2 cut(s)	519, 682
ErhI	CCWWGG	1 cut(s)	487
Esp3I	CGTCTC	1 cut(s)	416
FaeI	CATG	6 cut(s)	110, 393, 464, 491, 599, 615
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FatI	CATG	6 cut(s)	106, 389, 460, 487, 595, 611
FauI	CCCGC	2 cut(s)	356, 372
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	6 cut(s)	117, 226, 360, 628, 732, 735
FokI	GGATG	2 cut(s)	670, 711
FriOI	GRGCYC	2 cut(s)	519, 682
Fsp4HI	GCNGC	6 cut(s)	117, 226, 360, 628, 732, 735
FspBI	CTAG	2 cut(s)	324, 363
GluI	GCNGC	6 cut(s)	117, 226, 360, 628, 732, 735
HaeIII	GGCC	3 cut(s)	492, 517, 707
HapII	CCGG	1 cut(s)	519
HgaI	GACGC	2 cut(s)	398, 446
Hin1I	GRCGYC	1 cut(s)	457
Hin1II	CATG	6 cut(s)	110, 393, 464, 491, 599, 615
HinfI	GANTC	4 cut(s)	14, 103, 339, 553
HpaII	CCGG	1 cut(s)	519
HphI	GGTGA	2 cut(s)	170, 415
Hpy166II	GTNNAC	2 cut(s)	142, 466
Hpy188I	TCNGA	3 cut(s)	100, 259, 453
Hpy188III	TCNNGA	3 cut(s)	38, 107, 290
Hpy8I	GTNNAC	2 cut(s)	142, 466
HpyAV	CCTTC	2 cut(s)	214, 299
HpyCH4III	ACNGT	1 cut(s)	532
HpyCH4IV	ACGT	1 cut(s)	421
HpyCH4V	TGCA	7 cut(s)	116, 393, 419, 434, 599, 611, 731
HpyF10VI	GCNNNNNNNGC	1 cut(s)	390
HpyF3I	CTNAG	1 cut(s)	738
HpySE526I	ACGT	1 cut(s)	421
Hsp92I	GRCGYC	1 cut(s)	457
Hsp92II	CATG	6 cut(s)	110, 393, 464, 491, 599, 615
Kzo9I	GATC	5 cut(s)	25, 40, 576, 615, 745
LmnI	GCTCC	1 cut(s)	521
Lsp1109I	GCAGC	6 cut(s)	128, 237, 346, 639, 743, 746
LweI	GCATC	4 cut(s)	103, 496, 718, 751
MaeI	CTAG	2 cut(s)	324, 363
MaeII	ACGT	1 cut(s)	421
MalI	GATC	5 cut(s)	27, 42, 578, 617, 747
MboI	GATC	5 cut(s)	25, 40, 576, 615, 745
MboII	GAAGA	2 cut(s)	219, 342
MfeI	CAATTG	1 cut(s)	584
MflI	RGATCY	2 cut(s)	25, 40
MhlI	GDGCHC	2 cut(s)	519, 682
MluCI	AATT	8 cut(s)	86, 94, 146, 169, 295, 394, 584, 720
MlyI	GAGTC	1 cut(s)	333
MmeI	TCCRAC	1 cut(s)	206
MnlI	CCTC	7 cut(s)	46, 73, 131, 195, 378, 447, 696
MseI	TTAA	3 cut(s)	230, 651, 719
MslI	CAYNNNNRTG	1 cut(s)	111
MspA1I	CMGCKG	1 cut(s)	737
MspI	CCGG	1 cut(s)	519
MspR9I	CCNGG	2 cut(s)	519, 696
MunI	CAATTG	1 cut(s)	584
Mva1269I	GAATGC	1 cut(s)	167
MvaI	CCWGG	1 cut(s)	696
MvnI	CGCG	1 cut(s)	187
MwoI	GCNNNNNNNGC	1 cut(s)	390
NciI	CCSGG	1 cut(s)	519
NcoI	CCATGG	1 cut(s)	487
NdeII	GATC	5 cut(s)	25, 40, 576, 615, 745
NlaIII	CATG	6 cut(s)	110, 393, 464, 491, 599, 615
NlaIV	GGNNCC	3 cut(s)	42, 517, 523
NspI	RCATGY	2 cut(s)	393, 599
PagI	TCATGA	1 cut(s)	106
PctI	GAATGC	1 cut(s)	167
PfeI	GAWTC	3 cut(s)	14, 103, 553
PflMI	CCANNNNNTGG	1 cut(s)	500
PkrI	GCNGC	6 cut(s)	118, 227, 361, 629, 733, 736
PleI	GAGTC	1 cut(s)	333
PpsI	GAGTC	1 cut(s)	333
PsiI	TTATAA	1 cut(s)	152
Psp124BI	GAGCTC	1 cut(s)	682
Psp6I	CCWGG	1 cut(s)	694
PspGI	CCWGG	1 cut(s)	694
PspN4I	GGNNCC	3 cut(s)	42, 517, 523
PspOMI	GGGCCC	1 cut(s)	515
PspPI	GGNCC	6 cut(s)	81, 287, 491, 515, 516, 705
PstNI	CAGNNNCTG	1 cut(s)	737
PsuI	RGATCY	2 cut(s)	25, 40
PvuII	CAGCTG	1 cut(s)	737
RsaI	GTAC	3 cut(s)	239, 388, 591
RsaNI	GTAC	3 cut(s)	238, 387, 590
RseI	CAYNNNNRTG	1 cut(s)	111
SacI	GAGCTC	1 cut(s)	682
SaqAI	TTAA	3 cut(s)	230, 651, 719
SatI	GCNGC	6 cut(s)	117, 226, 360, 628, 732, 735
Sau3AI	GATC	5 cut(s)	25, 40, 576, 615, 745
Sau96I	GGNCC	6 cut(s)	81, 287, 491, 515, 516, 705
SchI	GAGTC	1 cut(s)	333
ScrFI	CCNGG	2 cut(s)	519, 696
SduI	GDGCHC	2 cut(s)	519, 682
SfaNI	GCATC	4 cut(s)	103, 496, 718, 751
SinI	GGWCC	2 cut(s)	81, 287
SmiMI	CAYNNNNRTG	1 cut(s)	111
Sse9I	AATT	8 cut(s)	86, 94, 146, 169, 295, 394, 584, 720
SsiI	CCGC	2 cut(s)	349, 379
SspMI	CTAG	2 cut(s)	324, 363
SstI	GAGCTC	1 cut(s)	682
StyD4I	CCNGG	2 cut(s)	517, 694
StyI	CCWWGG	1 cut(s)	487
TaaI	ACNGT	1 cut(s)	532
TaiI	ACGT	1 cut(s)	424
TaqI	TCGA	2 cut(s)	337, 676
TaqII	GACCGA	1 cut(s)	150
TasI	AATT	8 cut(s)	86, 94, 146, 169, 295, 394, 584, 720
TatI	WGTACW	1 cut(s)	386
TfiI	GAWTC	3 cut(s)	14, 103, 553
Tru1I	TTAA	3 cut(s)	230, 651, 719
Tru9I	TTAA	3 cut(s)	230, 651, 719
TscAI	CASTG	2 cut(s)	54, 715
TseI	GCWGC	6 cut(s)	116, 225, 359, 627, 731, 734
TspDTI	ATGAA	1 cut(s)	182
TspRI	CASTG	2 cut(s)	54, 715
Van91I	CCANNNNNTGG	1 cut(s)	500
VpaK11BI	GGWCC	2 cut(s)	81, 287
XapI	RAATTY	3 cut(s)	86, 146, 169
XceI	RCATGY	2 cut(s)	393, 599
XmiI	GTMKAC	1 cut(s)	141
XspI	CTAG	2 cut(s)	324, 363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.