Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002808

Physical Location & Seq

Genomic Coordinates Reverse (-)

77675883 .. 77682535

Gene Structure 6653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG453500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGATATTGTTGAATCTATACAAAATCTTCCAGTTCAGGATCCACCAGTGGAGGAGTTCTCCTCTGTTGATTTGACTTGGACCAAATTTGGCAATTCCGAGAATCATGATGATGCAGCCCTCATTCCTTATGACCGAGTAGACGAATTTATAATCGGTGAATGCTCAAATTTAGAGTGTCCAACGCAATTTCATATTGAGAGGGGAAGAAAAAGAAAGAAGGGCAGCTTAAAGGAGTACGCTGATGATGAGTACTTGGAATATAAGCTGTTCAGAGTAAGTTACTACACCCACCAATCAAAACCTGCCACGTCACAAATCGTTGACCCGAGCTACACGTGGACGGTAGCAGTTGGTCCTTTATATAGAAAGGAGCAAAGTCTTGAGCAGCAGAGAATAACTCCCCCCCCACCACAATCCATAATGGGATTATCCGAGGGAGAAAGATGGAGCACGACTTCAGATGAGACTATCCTACAGTCCGGTGGCGAATTTATTTCTCTTTCTTGTTCAGTGGACGGATTGCCAGCTTGCTGGGGCCCTTGGCTTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

184

Amino Acids

20.88

Weight (kDa)

4.58

Isoelectric Point (pI)

55.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60560 AT1G60560 AT1G60560
fragaria_vesca	FvH4_1g11391
malus_domestica	MD14G1040800.v1.1
prunus_persica	Prupe.7G172200_v2.0.a1
pyrus_communis	pycom14g03460
rosa_chinensis	RchiOBHm_Chr2g0098931 RchiOBHm_Chr2g0098941 RchiOBHm_Chr4g0406971 RchiOBHm_Chr7g0185761 RchiOBHm_Chr7g0219821
rosa_laevigata	RLG00000016835 RLG00000036043 RLG00000036045
rosa_multiflora	Rmu_sc0000600.1_g000016 Rmu_sc0000936.1_g000018 Rmu_sc0000936.1_g000019 Rmu_sc0007649.1_g000004 Rmu_sc0009833.1_g000012 Rmu_sc0027115.1_g000002
rosa_roxburghii	Rroxscaffold_1G00011620 Rroxscaffold_2G00143560
rosa_rugosa	Rorug03G0254100 Rorug03G0293700 Rorug04G0076000 Rorug04G0076100 Rorug04G0076200
rosa_samantha	Rh4AG141800 Rh4BG138900 Rh4DG135900 Rh5AG453500 Rh5AG453600 Rh5DG485000 Rh7DG249200
rosa_wichuraiana	Rw0G006010 Rw2G009560 Rw4G011550 Rw5G042350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	152
Acc36I	ACCTGC	1 cut(s)	313
AccI	GTMKAC	1 cut(s)	141
AclWI	GGATC	2 cut(s)	35, 48
AcsI	RAATTY	4 cut(s)	86, 146, 169, 491
AcuI	CTGAAG	1 cut(s)	444
AcvI	CACGTG	1 cut(s)	339
AfaI	GTAC	2 cut(s)	239, 254
AflIII	ACRYGT	1 cut(s)	336
AgsI	TTSAA	1 cut(s)	14
AjiI	CACGTC	1 cut(s)	312
AluBI	AGCT	4 cut(s)	228, 268, 333, 530
AluI	AGCT	4 cut(s)	228, 268, 333, 530
Alw21I	GWGCWC	1 cut(s)	455
Alw26I	GTCTC	1 cut(s)	461
AlwI	GGATC	2 cut(s)	35, 48
Ama87I	CYCGRG	1 cut(s)	328
AoxI	GGCC	1 cut(s)	538
ApaI	GGGCCC	1 cut(s)	542
ApeKI	GCWGC	3 cut(s)	116, 225, 388
ApoI	RAATTY	4 cut(s)	86, 146, 169, 491
AspS9I	GGNCC	4 cut(s)	81, 356, 538, 539
AsuHPI	GGTGA	1 cut(s)	170
AvaI	CYCGRG	1 cut(s)	328
AvaII	GGWCC	2 cut(s)	81, 356
BaeGI	GKGCMC	1 cut(s)	542
BamHI	GGATCC	1 cut(s)	40
BanII	GRGCYC	1 cut(s)	542
BbrPI	CACGTG	1 cut(s)	339
Bbv12I	GWGCWC	1 cut(s)	455
BbvI	GCAGC	3 cut(s)	128, 237, 400
BccI	CCATC	1 cut(s)	441
BcoDI	GTCTC	1 cut(s)	461
BfmI	CTRYAG	1 cut(s)	476
BfuAI	ACCTGC	1 cut(s)	313
BisI	GCNGC	3 cut(s)	117, 226, 389
BlsI	GCNGC	3 cut(s)	118, 227, 390
BmcAI	AGTACT	1 cut(s)	254
Bme18I	GGWCC	2 cut(s)	81, 356
BmeT110I	CYCGRG	1 cut(s)	328
BmgBI	CACGTC	1 cut(s)	312
BmgT120I	GGNCC	4 cut(s)	81, 356, 538, 539
BmiI	GGNNCC	3 cut(s)	42, 539, 540
BmsI	GCATC	1 cut(s)	103
BplI	GAGNNNNNCTC	6 cut(s)	44, 76, 47, 79, 385, 417
BpuEI	CTTGAG	1 cut(s)	404
BsaAI	YACGTR	1 cut(s)	339
BsaJI	CCNNGG	2 cut(s)	435, 542
BsaWI	WCCGGW	1 cut(s)	482
Bse1I	ACTGG	2 cut(s)	32, 47
BseDI	CCNNGG	2 cut(s)	435, 542
BseNI	ACTGG	2 cut(s)	32, 47
BseRI	GAGGAG	2 cut(s)	52, 68
BseSI	GKGCMC	1 cut(s)	542
BseXI	GCAGC	3 cut(s)	128, 237, 400
BseYI	CCCAGC	1 cut(s)	534
BshFI	GGCC	1 cut(s)	540
BsiHKAI	GWGCWC	1 cut(s)	455
BsiHKCI	CYCGRG	1 cut(s)	328
BsiSI	CCGG	1 cut(s)	483
BsmAI	GTCTC	1 cut(s)	461
BsmI	GAATGC	1 cut(s)	167
BsnI	GGCC	1 cut(s)	540
BsoBI	CYCGRG	1 cut(s)	328
Bsp120I	GGGCCC	1 cut(s)	538
Bsp1286I	GDGCHC	2 cut(s)	455, 542
Bsp143I	GATC	1 cut(s)	40
BspANI	GGCC	1 cut(s)	540
BspHI	TCATGA	1 cut(s)	106
BspLI	GGNNCC	3 cut(s)	42, 539, 540
BspMI	ACCTGC	1 cut(s)	313
BspPI	GGATC	2 cut(s)	35, 48
BsrI	ACTGG	2 cut(s)	32, 47
BssECI	CCNNGG	2 cut(s)	435, 542
BssMI	GATC	1 cut(s)	40
BssT1I	CCWWGG	1 cut(s)	542
Bst4CI	ACNGT	2 cut(s)	346, 480
BstBAI	YACGTR	1 cut(s)	339
BstC8I	GCNNGC	3 cut(s)	528, 532, 549
BstDEI	CTNAG	1 cut(s)	552
BstKTI	GATC	1 cut(s)	43
BstMAI	GTCTC	1 cut(s)	461
BstMBI	GATC	1 cut(s)	40
BstSFI	CTRYAG	1 cut(s)	476
BstSLI	GKGCMC	1 cut(s)	542
BstV1I	GCAGC	3 cut(s)	128, 237, 400
BstX2I	RGATCY	1 cut(s)	40
BstXI	CCANNNNNNTGG	1 cut(s)	534
BstYI	RGATCY	1 cut(s)	40
BsuRI	GGCC	1 cut(s)	540
BtrI	CACGTC	1 cut(s)	312
BtsIMutI	CAGTG	2 cut(s)	54, 519
BveI	ACCTGC	1 cut(s)	313
Cac8I	GCNNGC	3 cut(s)	528, 532, 549
CciI	TCATGA	1 cut(s)	106
Cfr13I	GGNCC	4 cut(s)	81, 356, 538, 539
Csp6I	GTAC	2 cut(s)	238, 253
CviAII	CATG	1 cut(s)	107
CviJI	RGCY	7 cut(s)	119, 228, 268, 333, 530, 540, 547
CviKI_1	RGCY	7 cut(s)	119, 228, 268, 333, 530, 540, 547
CviQI	GTAC	2 cut(s)	238, 253
DdeI	CTNAG	1 cut(s)	552
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	542
Eco24I	GRGCYC	1 cut(s)	542
Eco47I	GGWCC	2 cut(s)	81, 356
Eco57I	CTGAAG	1 cut(s)	444
Eco72I	CACGTG	1 cut(s)	339
Eco88I	CYCGRG	1 cut(s)	328
EcoO109I	RGGNCCY	2 cut(s)	538, 539
EcoT14I	CCWWGG	1 cut(s)	542
EcoT38I	GRGCYC	1 cut(s)	542
ErhI	CCWWGG	1 cut(s)	542
FaeI	CATG	1 cut(s)	110
FaiI	YATR	9 cut(s)	20, 108, 132, 152, 195, 264, 364, 366, 422
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FatI	CATG	1 cut(s)	106
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	3 cut(s)	117, 226, 389
FriOI	GRGCYC	1 cut(s)	542
Fsp4HI	GCNGC	3 cut(s)	117, 226, 389
GluI	GCNGC	3 cut(s)	117, 226, 389
GsaI	CCCAGC	1 cut(s)	538
HaeIII	GGCC	1 cut(s)	540
HapII	CCGG	1 cut(s)	483
Hin1II	CATG	1 cut(s)	110
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HinfI	GANTC	2 cut(s)	14, 103
HpaII	CCGG	1 cut(s)	483
HphI	GGTGA	1 cut(s)	170
Hpy166II	GTNNAC	4 cut(s)	142, 325, 342, 517
Hpy188I	TCNGA	4 cut(s)	100, 275, 436, 463
Hpy188III	TCNNGA	3 cut(s)	38, 107, 383
Hpy8I	GTNNAC	4 cut(s)	142, 325, 342, 517
HpyAV	CCTTC	1 cut(s)	214
HpyCH4III	ACNGT	2 cut(s)	346, 480
HpyCH4IV	ACGT	2 cut(s)	311, 338
HpyCH4V	TGCA	1 cut(s)	116
HpyF3I	CTNAG	1 cut(s)	552
HpySE526I	ACGT	2 cut(s)	311, 338
Hsp92II	CATG	1 cut(s)	110
Kzo9I	GATC	1 cut(s)	40
LmnI	GCTCC	2 cut(s)	373, 450
LpnPI	CCDG	7 cut(s)	23, 45, 60, 318, 496, 520, 540
Lsp1109I	GCAGC	3 cut(s)	128, 237, 400
LweI	GCATC	1 cut(s)	103
MaeII	ACGT	2 cut(s)	311, 338
MaeIII	GTNAC	2 cut(s)	281, 312
MalI	GATC	1 cut(s)	42
MboI	GATC	1 cut(s)	40
MboII	GAAGA	2 cut(s)	20, 219
MflI	RGATCY	1 cut(s)	40
MhlI	GDGCHC	2 cut(s)	455, 542
MluCI	AATT	6 cut(s)	86, 94, 146, 169, 188, 491
MmeI	TCCRAC	1 cut(s)	206
MnlI	CCTC	5 cut(s)	46, 73, 131, 195, 430
MseI	TTAA	1 cut(s)	230
MslI	CAYNNNNRTG	1 cut(s)	111
MspI	CCGG	1 cut(s)	483
Mva1269I	GAATGC	1 cut(s)	167
NdeII	GATC	1 cut(s)	40
NlaIII	CATG	1 cut(s)	110
NlaIV	GGNNCC	3 cut(s)	42, 539, 540
NmuCI	GTSAC	1 cut(s)	312
PagI	TCATGA	1 cut(s)	106
PctI	GAATGC	1 cut(s)	167
PfeI	GAWTC	2 cut(s)	14, 103
PkrI	GCNGC	3 cut(s)	118, 227, 390
PmaCI	CACGTG	1 cut(s)	339
PmlI	CACGTG	1 cut(s)	339
Ppu21I	YACGTR	1 cut(s)	339
PsiI	TTATAA	1 cut(s)	152
PspCI	CACGTG	1 cut(s)	339
PspFI	CCCAGC	1 cut(s)	534
PspN4I	GGNNCC	3 cut(s)	42, 539, 540
PspOMI	GGGCCC	1 cut(s)	538
PspPI	GGNCC	4 cut(s)	81, 356, 538, 539
PsuI	RGATCY	1 cut(s)	40
RsaI	GTAC	2 cut(s)	239, 254
RsaNI	GTAC	2 cut(s)	238, 253
RseI	CAYNNNNRTG	1 cut(s)	111
SaqAI	TTAA	1 cut(s)	230
SatI	GCNGC	3 cut(s)	117, 226, 389
Sau3AI	GATC	1 cut(s)	40
Sau96I	GGNCC	4 cut(s)	81, 356, 538, 539
ScaI	AGTACT	1 cut(s)	254
SduI	GDGCHC	2 cut(s)	455, 542
SetI	ASST	7 cut(s)	230, 270, 307, 314, 335, 341, 532
SfaNI	GCATC	1 cut(s)	103
SfcI	CTRYAG	1 cut(s)	476
SinI	GGWCC	2 cut(s)	81, 356
SmiMI	CAYNNNNRTG	1 cut(s)	111
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
Sse9I	AATT	6 cut(s)	86, 94, 146, 169, 188, 491
StyI	CCWWGG	1 cut(s)	542
TaaI	ACNGT	2 cut(s)	346, 480
TaiI	ACGT	2 cut(s)	314, 341
TaqII	GACCGA	1 cut(s)	150
TasI	AATT	6 cut(s)	86, 94, 146, 169, 188, 491
TatI	WGTACW	1 cut(s)	252
TfiI	GAWTC	2 cut(s)	14, 103
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TscAI	CASTG	2 cut(s)	54, 519
TseFI	GTSAC	1 cut(s)	312
TseI	GCWGC	3 cut(s)	116, 225, 388
Tsp45I	GTSAC	1 cut(s)	312
TspDTI	ATGAA	1 cut(s)	182
TspGWI	ACGGA	1 cut(s)	534
TspRI	CASTG	2 cut(s)	54, 519
VpaK11BI	GGWCC	2 cut(s)	81, 356
XapI	RAATTY	4 cut(s)	86, 146, 169, 491
XmiI	GTMKAC	1 cut(s)	141
ZrmI	AGTACT	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.