Rh5AG453600

SWIM zinc finger family protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
77684139 .. 77686096
1958 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG453600.1

Sequence Viewer

Length: 1140 bp
ATGGATATTGTTGAATCTATACAAGATCTTCCAGTTCAGGATCCACCAGTGGACGAGTTCTCCTCTGCTGATTTGACTTGGACCAAATTTGGCAATTCTGAGAATCATGATGATGCAGCCCTCATTCCTTATGACCGAGTAGACGAATTTATAATCGGTGAATGCTCAAATTTAGAGTGTCCAACGCGATTTCATATTGAGAGGGGAAGAAAAAGAAAGAAGGGCAGCTTAAAGGAGTACGCTGATGATGAGTATTTGGAATATAAGCTGTATTGGTGTTCTTTTGGTCCTGAAAATTATGGGGAAGGTGGGGGTATTTTACCTAGCAGAAGATATCGACTCAACACCCGCAATCGCGCTGCTAGACCTCAATCTATGCGGGGCTGTACATGCAATTTTGTGGTGAAGCGTCTCTATGCACGTCCATCACTTGCACTACTTATCTATCATCAGAGGCGTCATGTGAACAAATCTGGTTTTGTTTGCCATGGCCCACTTGATGGAGATGCCATTGGGCCCGGAGCCAAGACAGTTCCATATATCTGTAATGAGATTCAACAACAAACAATGTCTATGATCTATCTGGGTGTTCCTGAAGAGAATATACTAGAAAAACACATTGAGGGGATCGAGCGATATTGTGCTTCAAATGCAAAAGTCAATAGCCTTGCTTCCCAGTATGTCCACAAACTTGGGATGATTATTCAAAGGTCTACCCATGAATTGGATCTTGATGATCAAGCCAGCATCCGCATGTGGGTTGAGCGCAATAAGAAATCCATATTCATTCATCAGGATACTTCAGAAACTGATCCTTTCATTCTGGGGATTCAGACTGAGTGGCAACTGCAACAATTGATACGTTTTGGCCATCGCAGTCTCATTGCAATTGATTCAACATTTGGTATAAAGAGACTTAAGTATCCTTTGTGCACACTTCTTGTCTTTGATTCTAGACAACATGCACTCCCTGTTGCATGGATCATCACACGCAGCTTTTCAAAGCCAGATGTGTCTAAATGGATGACAGCTCTACTTGGTCGAGCTCGTAGTGTTGAGCCTGGATGGAGGGCCAGTGGGTTTTTAATTGATGATGCAGCAGCTGAGACTGATCCCATCAGGCAAGATGCCCCTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

379

Amino Acids

43.3

Weight (kDa)

6.61

Isoelectric Point (pI)

55.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 152
AccB7I CCANNNNNTGG 2 cut(s) 500, 724
AccI GTMKAC 2 cut(s) 141, 713
AccII CGCG 2 cut(s) 187, 357
AciI CCGC 3 cut(s) 349, 379, 751
AclWI GGATC 7 cut(s) 35, 48, 635, 735, 806, 989, 1106
AcoI YGGCCR 1 cut(s) 868
AcsI RAATTY 3 cut(s) 86, 146, 169
AcuI CTGAAG 2 cut(s) 615, 786
AcyI GRCGYC 1 cut(s) 457
AfaI GTAC 2 cut(s) 239, 388
AfiI CCNNNNNNNGG 3 cut(s) 500, 724, 757
AflII CTTAAG 1 cut(s) 917
AgsI TTSAA 6 cut(s) 14, 557, 648, 707, 897, 1002
AjiI CACGTC 1 cut(s) 422
AjnI CCWGG 1 cut(s) 1060
AluBI AGCT 6 cut(s) 228, 268, 996, 1031, 1046, 1103
AluI AGCT 6 cut(s) 228, 268, 996, 1031, 1046, 1103
Alw21I GWGCWC 2 cut(s) 935, 1048
Alw26I GTCTC 4 cut(s) 416, 884, 907, 1100
Alw44I GTGCAC 1 cut(s) 931
AlwI GGATC 7 cut(s) 35, 48, 635, 735, 806, 989, 1106
AlwNI CAGNNNCTG 2 cut(s) 809, 1103
AoxI GGCC 4 cut(s) 490, 515, 868, 1071
ApaI GGGCCC 1 cut(s) 519
ApaLI GTGCAC 1 cut(s) 931
ApeKI GCWGC 6 cut(s) 116, 225, 359, 993, 1097, 1100
ApoI RAATTY 3 cut(s) 86, 146, 169
AspLEI GCGC 2 cut(s) 359, 768
AspS9I GGNCC 6 cut(s) 81, 287, 491, 515, 516, 1071
AsuC2I CCSGG 1 cut(s) 519
AsuHPI GGTGA 2 cut(s) 170, 415
AvaII GGWCC 2 cut(s) 81, 287
BaeGI GKGCMC 2 cut(s) 519, 935
BaeI ACNNNNGTAYC 2 cut(s) 905, 938
BalI TGGCCA 1 cut(s) 870
BamHI GGATCC 1 cut(s) 40
BanII GRGCYC 2 cut(s) 519, 1048
BarI GAAGNNNNNNTAC 2 cut(s) 588, 620
Bbv12I GWGCWC 2 cut(s) 935, 1048
BbvI GCAGC 6 cut(s) 128, 237, 346, 1005, 1109, 1112
BccI CCATC 5 cut(s) 433, 494, 879, 1059, 1124
BciT130I CCWGG 1 cut(s) 1062
BciVI GTATCC 2 cut(s) 790, 933
BclI TGATCA 1 cut(s) 736
BcnI CCSGG 1 cut(s) 519
BcoDI GTCTC 4 cut(s) 416, 884, 907, 1100
BfaI CTAG 4 cut(s) 324, 363, 608, 954
BfrI CTTAAG 1 cut(s) 917
BfuI GTATCC 2 cut(s) 790, 933
BglII AGATCT 1 cut(s) 25
BisI GCNGC 6 cut(s) 117, 226, 360, 994, 1098, 1101
BlsI GCNGC 6 cut(s) 118, 227, 361, 995, 1099, 1102
Bme1390I CCNGG 2 cut(s) 519, 1062
Bme18I GGWCC 2 cut(s) 81, 287
BmgBI CACGTC 1 cut(s) 422
BmgT120I GGNCC 6 cut(s) 81, 287, 491, 515, 516, 1071
BmiI GGNNCC 3 cut(s) 42, 517, 523
BmrFI CCNGG 2 cut(s) 519, 1062
BmrI ACTGGG 1 cut(s) 670
BmsI GCATC 5 cut(s) 103, 496, 756, 1084, 1117
BmuI ACTGGG 1 cut(s) 670
BplI GAGNNNNNCTC 2 cut(s) 47, 79
BpuMI CCSGG 1 cut(s) 519
BsaHI GRCGYC 1 cut(s) 457
BsaJI CCNNGG 1 cut(s) 487
BsaXI ACNNNNNCTCC 6 cut(s) 44, 74, 951, 981, 1060, 1090
Bsc4I CCNNNNNNNGG 3 cut(s) 500, 724, 757
Bse1I ACTGG 4 cut(s) 32, 47, 676, 1074
Bse3DI GCAATG 1 cut(s) 882
BseBI CCWGG 1 cut(s) 1062
BseDI CCNNGG 1 cut(s) 487
BseGI GGATG 4 cut(s) 702, 747, 1029, 1070
BseLI CCNNNNNNNGG 3 cut(s) 500, 724, 757
BseMI GCAATG 1 cut(s) 882
BseMII CTCAG 3 cut(s) 90, 828, 1095
BseNI ACTGG 4 cut(s) 32, 47, 676, 1074
BseRI GAGGAG 1 cut(s) 52
BseSI GKGCMC 2 cut(s) 519, 935
BseXI GCAGC 6 cut(s) 128, 237, 346, 1005, 1109, 1112
Bsh1236I CGCG 2 cut(s) 187, 357
BshFI GGCC 4 cut(s) 492, 517, 870, 1073
BsiHKAI GWGCWC 2 cut(s) 935, 1048
BsiSI CCGG 1 cut(s) 519
BslI CCNNNNNNNGG 3 cut(s) 500, 724, 757
BsmAI GTCTC 4 cut(s) 416, 884, 907, 1100
BsmBI CGTCTC 1 cut(s) 416
BsmI GAATGC 1 cut(s) 167
BsnI GGCC 4 cut(s) 492, 517, 870, 1073
Bsp120I GGGCCC 1 cut(s) 515
Bsp1286I GDGCHC 3 cut(s) 519, 935, 1048
Bsp1407I TGTACA 1 cut(s) 386
Bsp143I GATC 9 cut(s) 25, 40, 576, 627, 727, 736, 811, 981, 1111
Bsp19I CCATGG 1 cut(s) 487
BspACI CCGC 3 cut(s) 349, 379, 751
BspANI GGCC 4 cut(s) 492, 517, 870, 1073
BspCNI CTCAG 3 cut(s) 91, 829, 1096
BspFNI CGCG 2 cut(s) 187, 357
BspHI TCATGA 1 cut(s) 106
BspLI GGNNCC 3 cut(s) 42, 517, 523
BspPI GGATC 7 cut(s) 35, 48, 635, 735, 806, 989, 1106
BspTI CTTAAG 1 cut(s) 917
BsrDI GCAATG 1 cut(s) 882
BsrGI TGTACA 1 cut(s) 386
BsrI ACTGG 4 cut(s) 32, 47, 676, 1074
BssECI CCNNGG 1 cut(s) 487
BssMI GATC 9 cut(s) 25, 40, 576, 627, 727, 736, 811, 981, 1111
BssNI GRCGYC 1 cut(s) 457
BssT1I CCWWGG 1 cut(s) 487
Bst2UI CCWGG 1 cut(s) 1062
Bst4CI ACNGT 1 cut(s) 532
Bst6I CTCTTC 1 cut(s) 591
BstACI GRCGYC 1 cut(s) 457
BstAFI CTTAAG 1 cut(s) 917
BstAUI TGTACA 1 cut(s) 386
BstC8I GCNNGC 1 cut(s) 745
BstDEI CTNAG 3 cut(s) 99, 837, 1104
BstDSI CCRYGG 1 cut(s) 487
BstF5I GGATG 4 cut(s) 702, 747, 1029, 1070
BstFNI CGCG 2 cut(s) 187, 357
BstHHI GCGC 2 cut(s) 359, 768
BstKTI GATC 9 cut(s) 28, 43, 579, 630, 730, 739, 814, 984, 1114
BstMAI GTCTC 4 cut(s) 416, 884, 907, 1100
BstMBI GATC 9 cut(s) 25, 40, 576, 627, 727, 736, 811, 981, 1111
BstMWI GCNNNNNNNGC 2 cut(s) 390, 650
BstNI CCWGG 1 cut(s) 1062
BstNSI RCATGY 3 cut(s) 393, 757, 965
BstSCI CCNGG 2 cut(s) 517, 1060
BstSLI GKGCMC 2 cut(s) 519, 935
BstUI CGCG 2 cut(s) 187, 357
BstV1I GCAGC 6 cut(s) 128, 237, 346, 1005, 1109, 1112
BstX2I RGATCY 3 cut(s) 25, 40, 727
BstXI CCANNNNNNTGG 1 cut(s) 692
BstYI RGATCY 3 cut(s) 25, 40, 727
BsuI GTATCC 2 cut(s) 790, 933
BsuRI GGCC 4 cut(s) 492, 517, 870, 1073
BtgI CCRYGG 1 cut(s) 487
BtgZI GCGATG 1 cut(s) 857
BtrI CACGTC 1 cut(s) 422
BtsCI GGATG 4 cut(s) 702, 747, 1029, 1070
BtsIMutI CAGTG 2 cut(s) 54, 1081
Cac8I GCNNGC 1 cut(s) 745
CaiI CAGNNNCTG 2 cut(s) 809, 1103
CciI TCATGA 1 cut(s) 106
CfoI GCGC 2 cut(s) 359, 768
Cfr13I GGNCC 6 cut(s) 81, 287, 491, 515, 516, 1071
CseI GACGC 2 cut(s) 398, 446
Csp6I GTAC 2 cut(s) 238, 387
CviAII CATG 8 cut(s) 107, 390, 461, 488, 719, 754, 962, 978
CviQI GTAC 2 cut(s) 238, 387
DdeI CTNAG 3 cut(s) 99, 837, 1104
DpnI GATC 9 cut(s) 27, 42, 578, 629, 729, 738, 813, 983, 1113
DpnII GATC 9 cut(s) 25, 40, 576, 627, 727, 736, 811, 981, 1111
EaeI YGGCCR 1 cut(s) 868
Eam1104I CTCTTC 1 cut(s) 591
EarI CTCTTC 1 cut(s) 591
Ecl136II GAGCTC 1 cut(s) 1046
Eco130I CCWWGG 1 cut(s) 487
Eco24I GRGCYC 2 cut(s) 519, 1048
Eco32I GATATC 1 cut(s) 335
Eco47I GGWCC 2 cut(s) 81, 287
Eco53kI GAGCTC 1 cut(s) 1046
Eco57I CTGAAG 2 cut(s) 615, 786
EcoICRI GAGCTC 1 cut(s) 1046
EcoRII CCWGG 1 cut(s) 1060
EcoRV GATATC 1 cut(s) 335
EcoT14I CCWWGG 1 cut(s) 487
EcoT38I GRGCYC 2 cut(s) 519, 1048
ErhI CCWWGG 1 cut(s) 487
Esp3I CGTCTC 1 cut(s) 416
FaeI CATG 8 cut(s) 110, 393, 464, 491, 722, 757, 965, 981
FalI AAGNNNNNCTT 2 cut(s) 212, 244
FatI CATG 8 cut(s) 106, 389, 460, 487, 718, 753, 961, 977
FauI CCCGC 2 cut(s) 356, 372
FbaI TGATCA 1 cut(s) 736
FblI GTMKAC 2 cut(s) 141, 713
Fnu4HI GCNGC 6 cut(s) 117, 226, 360, 994, 1098, 1101
FokI GGATG 4 cut(s) 709, 734, 1036, 1077
FriOI GRGCYC 2 cut(s) 519, 1048
Fsp4HI GCNGC 6 cut(s) 117, 226, 360, 994, 1098, 1101
FspBI CTAG 4 cut(s) 324, 363, 608, 954
GlaI GCGC 2 cut(s) 358, 767
GluI GCNGC 6 cut(s) 117, 226, 360, 994, 1098, 1101
HaeIII GGCC 4 cut(s) 492, 517, 870, 1073
HapII CCGG 1 cut(s) 519
HgaI GACGC 2 cut(s) 398, 446
HhaI GCGC 2 cut(s) 359, 768
Hin1I GRCGYC 1 cut(s) 457
Hin1II CATG 8 cut(s) 110, 393, 464, 491, 722, 757, 965, 981
Hin6I GCGC 2 cut(s) 357, 766
HinP1I GCGC 2 cut(s) 357, 766
HinfI GANTC 7 cut(s) 14, 103, 339, 553, 829, 893, 950
HpaII CCGG 1 cut(s) 519
HphI GGTGA 2 cut(s) 170, 415
Hpy166II GTNNAC 6 cut(s) 52, 142, 466, 685, 714, 933
Hpy188I TCNGA 4 cut(s) 100, 453, 805, 834
Hpy188III TCNNGA 7 cut(s) 38, 107, 290, 593, 731, 794, 954
Hpy8I GTNNAC 6 cut(s) 52, 142, 466, 685, 714, 933
HpyAV CCTTC 2 cut(s) 214, 299
HpyCH4III ACNGT 1 cut(s) 532
HpyCH4IV ACGT 2 cut(s) 421, 862
HpyF10VI GCNNNNNNNGC 2 cut(s) 390, 650
HpyF3I CTNAG 3 cut(s) 99, 837, 1104
HpySE526I ACGT 2 cut(s) 421, 862
Hsp92I GRCGYC 1 cut(s) 457
Hsp92II CATG 8 cut(s) 110, 393, 464, 491, 722, 757, 965, 981
HspAI GCGC 2 cut(s) 357, 766
Ksp22I TGATCA 1 cut(s) 736
Kzo9I GATC 9 cut(s) 25, 40, 576, 627, 727, 736, 811, 981, 1111
LmnI GCTCC 1 cut(s) 521
Lsp1109I GCAGC 6 cut(s) 128, 237, 346, 1005, 1109, 1112
LweI GCATC 5 cut(s) 103, 496, 756, 1084, 1117
MaeI CTAG 4 cut(s) 324, 363, 608, 954
MaeII ACGT 2 cut(s) 421, 862
MalI GATC 9 cut(s) 27, 42, 578, 629, 729, 738, 813, 983, 1113
MboI GATC 9 cut(s) 25, 40, 576, 627, 727, 736, 811, 981, 1111
MboII GAAGA 4 cut(s) 20, 219, 342, 608
MfeI CAATTG 2 cut(s) 854, 888
MflI RGATCY 3 cut(s) 25, 40, 727
MhlI GDGCHC 3 cut(s) 519, 935, 1048
MlsI TGGCCA 1 cut(s) 870
MluNI TGGCCA 1 cut(s) 870
MlyI GAGTC 1 cut(s) 333
MmeI TCCRAC 1 cut(s) 206
MnlI CCTC 7 cut(s) 73, 131, 195, 378, 447, 616, 1062
Mox20I TGGCCA 1 cut(s) 870
MscI TGGCCA 1 cut(s) 870
MseI TTAA 3 cut(s) 230, 918, 1085
MslI CAYNNNNRTG 2 cut(s) 111, 752
Msp20I TGGCCA 1 cut(s) 870
MspA1I CMGCKG 1 cut(s) 1103
MspCI CTTAAG 1 cut(s) 917
MspI CCGG 1 cut(s) 519
MspR9I CCNGG 2 cut(s) 519, 1062
MunI CAATTG 2 cut(s) 854, 888
Mva1269I GAATGC 1 cut(s) 167
MvaI CCWGG 1 cut(s) 1062
MvnI CGCG 2 cut(s) 187, 357
MwoI GCNNNNNNNGC 2 cut(s) 390, 650
NciI CCSGG 1 cut(s) 519
NcoI CCATGG 1 cut(s) 487
NdeII GATC 9 cut(s) 25, 40, 576, 627, 727, 736, 811, 981, 1111
NlaIII CATG 8 cut(s) 110, 393, 464, 491, 722, 757, 965, 981
NlaIV GGNNCC 3 cut(s) 42, 517, 523
NspI RCATGY 3 cut(s) 393, 757, 965
PagI TCATGA 1 cut(s) 106
PctI GAATGC 1 cut(s) 167
PfeI GAWTC 6 cut(s) 14, 103, 553, 829, 893, 950
PflMI CCANNNNNTGG 2 cut(s) 500, 724
PkrI GCNGC 6 cut(s) 118, 227, 361, 995, 1099, 1102
PleI GAGTC 1 cut(s) 333
PpsI GAGTC 1 cut(s) 333
PsiI TTATAA 1 cut(s) 152
Psp124BI GAGCTC 1 cut(s) 1048
Psp6I CCWGG 1 cut(s) 1060
PspGI CCWGG 1 cut(s) 1060
PspN4I GGNNCC 3 cut(s) 42, 517, 523
PspOMI GGGCCC 1 cut(s) 515
PspPI GGNCC 6 cut(s) 81, 287, 491, 515, 516, 1071
PstNI CAGNNNCTG 2 cut(s) 809, 1103
PsuI RGATCY 3 cut(s) 25, 40, 727
PvuII CAGCTG 1 cut(s) 1103
RsaI GTAC 2 cut(s) 239, 388
RsaNI GTAC 2 cut(s) 238, 387
RseI CAYNNNNRTG 2 cut(s) 111, 752
SacI GAGCTC 1 cut(s) 1048
SaqAI TTAA 3 cut(s) 230, 918, 1085
SatI GCNGC 6 cut(s) 117, 226, 360, 994, 1098, 1101
Sau3AI GATC 9 cut(s) 25, 40, 576, 627, 727, 736, 811, 981, 1111
Sau96I GGNCC 6 cut(s) 81, 287, 491, 515, 516, 1071
SchI GAGTC 1 cut(s) 333
ScrFI CCNGG 2 cut(s) 519, 1062
SduI GDGCHC 3 cut(s) 519, 935, 1048
SfaNI GCATC 5 cut(s) 103, 496, 756, 1084, 1117
SinI GGWCC 2 cut(s) 81, 287
SmiMI CAYNNNNRTG 2 cut(s) 111, 752
SmlI CTYRAG 1 cut(s) 917
SmoI CTYRAG 1 cut(s) 917
SsiI CCGC 3 cut(s) 349, 379, 751
SspMI CTAG 4 cut(s) 324, 363, 608, 954
SstI GAGCTC 1 cut(s) 1048
StyD4I CCNGG 2 cut(s) 517, 1060
StyI CCWWGG 1 cut(s) 487
TaaI ACNGT 1 cut(s) 532
TaiI ACGT 2 cut(s) 424, 865
TaqI TCGA 3 cut(s) 337, 630, 1042
TaqII GACCGA 1 cut(s) 150
TatI WGTACW 1 cut(s) 386
TfiI GAWTC 6 cut(s) 14, 103, 553, 829, 893, 950
Tru1I TTAA 3 cut(s) 230, 918, 1085
Tru9I TTAA 3 cut(s) 230, 918, 1085
TscAI CASTG 2 cut(s) 54, 1081
TseI GCWGC 6 cut(s) 116, 225, 359, 993, 1097, 1100
TspDTI ATGAA 5 cut(s) 182, 735, 775, 779, 808
TspRI CASTG 2 cut(s) 54, 1081
Van91I CCANNNNNTGG 2 cut(s) 500, 724
Vha464I CTTAAG 1 cut(s) 917
VneI GTGCAC 1 cut(s) 931
VpaK11BI GGWCC 2 cut(s) 81, 287
XapI RAATTY 3 cut(s) 86, 146, 169
XbaI TCTAGA 1 cut(s) 953
XceI RCATGY 3 cut(s) 393, 757, 965
XmiI GTMKAC 2 cut(s) 141, 713
XspI CTAG 4 cut(s) 324, 363, 608, 954
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.