Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027115.1

Orthogroup ID

OG0002808

Physical Location & Seq

Genomic Coordinates Forward (+)

15230 .. 16391

Gene Structure 1162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027115.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

atggatattgttgaatctatacaagatcttcaagttcaagatccaccagtggaggagttctcctctgctgatttgatttggaccaaatttggcaattccgagaatcatgatgatgcagccctcattccttatgaccgagtagacgaatttataatcggtgaatgctcaaatttagagtgtccaacgcgatttcatattgagaggggaagaaaaagaaagaagggctgcttaaaggagtacgctgatgatgagtatttggaatataagctttattggtgttcttttggtcctgaaaattatggggaaggtgggggtattttacctagcagaagatatcgactcaacacccgcaatcgcgctgctagacctcaatccatgcggggctgtacatgcaattttgtggtgaagcgtctctatgcacgtccatcacttgcactacttatctatcatcagaggcgtcatgtgaacaaatctggttttgtttgccatggcccacttgatggagatgccattggccccggagccaagacagttccatatatctgtaatgagattcaacaacaaacaaagtctatgatctatctgggtgttcctgaagagaatatactggaaaaacacattgaggggattgagcgataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

212

Amino Acids

24.35

Weight (kDa)

6.1

Isoelectric Point (pI)

63.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60560 AT1G60560 AT1G60560
fragaria_vesca	FvH4_1g11391
malus_domestica	MD14G1040800.v1.1
prunus_persica	Prupe.7G172200_v2.0.a1
pyrus_communis	pycom14g03460
rosa_chinensis	RchiOBHm_Chr2g0098931 RchiOBHm_Chr2g0098941 RchiOBHm_Chr4g0406971 RchiOBHm_Chr7g0185761 RchiOBHm_Chr7g0219821
rosa_laevigata	RLG00000016835 RLG00000036043 RLG00000036045
rosa_multiflora	Rmu_sc0000600.1_g000016 Rmu_sc0000936.1_g000018 Rmu_sc0000936.1_g000019 Rmu_sc0007649.1_g000004 Rmu_sc0009833.1_g000012 Rmu_sc0027115.1_g000002
rosa_roxburghii	Rroxscaffold_1G00011620 Rroxscaffold_2G00143560
rosa_rugosa	Rorug03G0254100 Rorug03G0293700 Rorug04G0076000 Rorug04G0076100 Rorug04G0076200
rosa_samantha	Rh4AG141800 Rh4BG138900 Rh4DG135900 Rh5AG453500 Rh5AG453600 Rh5DG485000 Rh7DG249200
rosa_wichuraiana	Rw0G006010 Rw2G009560 Rw4G011550 Rw5G042350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	152
AccB7I	CCANNNNNTGG	1 cut(s)	500
AccI	GTMKAC	1 cut(s)	141
AccII	CGCG	2 cut(s)	187, 357
AciI	CCGC	2 cut(s)	349, 379
AclWI	GGATC	1 cut(s)	35
AcsI	RAATTY	3 cut(s)	86, 146, 169
AcuI	CTGAAG	1 cut(s)	615
AcyI	GRCGYC	1 cut(s)	457
AfaI	GTAC	2 cut(s)	239, 388
AfiI	CCNNNNNNNGG	1 cut(s)	500
AgsI	TTSAA	4 cut(s)	14, 32, 38, 557
AjiI	CACGTC	1 cut(s)	422
AluBI	AGCT	1 cut(s)	268
AluI	AGCT	1 cut(s)	268
Alw26I	GTCTC	1 cut(s)	416
AlwI	GGATC	1 cut(s)	35
AoxI	GGCC	2 cut(s)	490, 514
ApeKI	GCWGC	3 cut(s)	116, 225, 359
ApoI	RAATTY	3 cut(s)	86, 146, 169
AspLEI	GCGC	1 cut(s)	359
AspS9I	GGNCC	4 cut(s)	81, 287, 491, 515
AsuC2I	CCSGG	1 cut(s)	519
AsuHPI	GGTGA	2 cut(s)	170, 415
AvaII	GGWCC	2 cut(s)	81, 287
BarI	GAAGNNNNNNTAC	2 cut(s)	588, 620
BbvI	GCAGC	3 cut(s)	128, 212, 346
BccI	CCATC	2 cut(s)	433, 494
BcnI	CCSGG	1 cut(s)	519
BcoDI	GTCTC	1 cut(s)	416
BfaI	CTAG	2 cut(s)	324, 363
BglII	AGATCT	1 cut(s)	25
BisI	GCNGC	3 cut(s)	117, 226, 360
BlsI	GCNGC	3 cut(s)	118, 227, 361
Bme1390I	CCNGG	1 cut(s)	519
Bme18I	GGWCC	2 cut(s)	81, 287
BmgBI	CACGTC	1 cut(s)	422
BmgT120I	GGNCC	4 cut(s)	81, 287, 491, 515
BmiI	GGNNCC	2 cut(s)	517, 523
BmrFI	CCNGG	1 cut(s)	519
BmsI	GCATC	2 cut(s)	103, 496
BplI	GAGNNNNNCTC	4 cut(s)	44, 76, 47, 79
BpuMI	CCSGG	1 cut(s)	519
BsaHI	GRCGYC	1 cut(s)	457
BsaJI	CCNNGG	2 cut(s)	487, 517
Bsc4I	CCNNNNNNNGG	1 cut(s)	500
Bse1I	ACTGG	2 cut(s)	47, 612
BseDI	CCNNGG	2 cut(s)	487, 517
BseLI	CCNNNNNNNGG	1 cut(s)	500
BseNI	ACTGG	2 cut(s)	47, 612
BseRI	GAGGAG	2 cut(s)	52, 68
BseXI	GCAGC	3 cut(s)	128, 212, 346
Bsh1236I	CGCG	2 cut(s)	187, 357
BshFI	GGCC	2 cut(s)	492, 516
BsiSI	CCGG	1 cut(s)	519
BslI	CCNNNNNNNGG	1 cut(s)	500
BsmAI	GTCTC	1 cut(s)	416
BsmBI	CGTCTC	1 cut(s)	416
BsmI	GAATGC	1 cut(s)	167
BsnI	GGCC	2 cut(s)	492, 516
Bsp1407I	TGTACA	1 cut(s)	386
Bsp143I	GATC	3 cut(s)	25, 40, 576
Bsp19I	CCATGG	1 cut(s)	487
BspACI	CCGC	2 cut(s)	349, 379
BspANI	GGCC	2 cut(s)	492, 516
BspFNI	CGCG	2 cut(s)	187, 357
BspHI	TCATGA	1 cut(s)	106
BspLI	GGNNCC	2 cut(s)	517, 523
BspPI	GGATC	1 cut(s)	35
BsrGI	TGTACA	1 cut(s)	386
BsrI	ACTGG	2 cut(s)	47, 612
BssECI	CCNNGG	2 cut(s)	487, 517
BssMI	GATC	3 cut(s)	25, 40, 576
BssNI	GRCGYC	1 cut(s)	457
BssT1I	CCWWGG	1 cut(s)	487
Bst4CI	ACNGT	1 cut(s)	532
Bst6I	CTCTTC	1 cut(s)	591
BstACI	GRCGYC	1 cut(s)	457
BstAUI	TGTACA	1 cut(s)	386
BstDSI	CCRYGG	1 cut(s)	487
BstFNI	CGCG	2 cut(s)	187, 357
BstHHI	GCGC	1 cut(s)	359
BstKTI	GATC	3 cut(s)	28, 43, 579
BstMAI	GTCTC	1 cut(s)	416
BstMBI	GATC	3 cut(s)	25, 40, 576
BstMWI	GCNNNNNNNGC	1 cut(s)	390
BstNSI	RCATGY	1 cut(s)	393
BstSCI	CCNGG	1 cut(s)	517
BstUI	CGCG	2 cut(s)	187, 357
BstV1I	GCAGC	3 cut(s)	128, 212, 346
BstX2I	RGATCY	2 cut(s)	25, 40
BstYI	RGATCY	2 cut(s)	25, 40
BsuRI	GGCC	2 cut(s)	492, 516
BtgI	CCRYGG	1 cut(s)	487
BtrI	CACGTC	1 cut(s)	422
BtsIMutI	CAGTG	1 cut(s)	54
CciI	TCATGA	1 cut(s)	106
CfoI	GCGC	1 cut(s)	359
Cfr13I	GGNCC	4 cut(s)	81, 287, 491, 515
CseI	GACGC	2 cut(s)	398, 446
Csp6I	GTAC	2 cut(s)	238, 387
CviAII	CATG	5 cut(s)	107, 376, 390, 461, 488
CviJI	RGCY	7 cut(s)	119, 225, 268, 384, 492, 516, 524
CviKI_1	RGCY	7 cut(s)	119, 225, 268, 384, 492, 516, 524
CviQI	GTAC	2 cut(s)	238, 387
DpnI	GATC	3 cut(s)	27, 42, 578
DpnII	GATC	3 cut(s)	25, 40, 576
Eam1104I	CTCTTC	1 cut(s)	591
EarI	CTCTTC	1 cut(s)	591
Eco130I	CCWWGG	1 cut(s)	487
Eco32I	GATATC	1 cut(s)	335
Eco47I	GGWCC	2 cut(s)	81, 287
Eco57I	CTGAAG	1 cut(s)	615
EcoRV	GATATC	1 cut(s)	335
EcoT14I	CCWWGG	1 cut(s)	487
ErhI	CCWWGG	1 cut(s)	487
Esp3I	CGTCTC	1 cut(s)	416
FaeI	CATG	5 cut(s)	110, 379, 393, 464, 491
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FatI	CATG	5 cut(s)	106, 375, 389, 460, 487
FauI	CCCGC	2 cut(s)	356, 372
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	3 cut(s)	117, 226, 360
Fsp4HI	GCNGC	3 cut(s)	117, 226, 360
FspBI	CTAG	2 cut(s)	324, 363
GlaI	GCGC	1 cut(s)	358
GluI	GCNGC	3 cut(s)	117, 226, 360
HaeIII	GGCC	2 cut(s)	492, 516
HapII	CCGG	1 cut(s)	519
HgaI	GACGC	2 cut(s)	398, 446
HhaI	GCGC	1 cut(s)	359
Hin1I	GRCGYC	1 cut(s)	457
Hin1II	CATG	5 cut(s)	110, 379, 393, 464, 491
Hin6I	GCGC	1 cut(s)	357
HinP1I	GCGC	1 cut(s)	357
HindIII	AAGCTT	1 cut(s)	266
HinfI	GANTC	4 cut(s)	14, 103, 339, 553
HpaII	CCGG	1 cut(s)	519
HphI	GGTGA	2 cut(s)	170, 415
Hpy166II	GTNNAC	2 cut(s)	142, 466
Hpy188I	TCNGA	2 cut(s)	100, 453
Hpy188III	TCNNGA	4 cut(s)	38, 107, 290, 593
Hpy8I	GTNNAC	2 cut(s)	142, 466
HpyAV	CCTTC	2 cut(s)	214, 299
HpyCH4III	ACNGT	1 cut(s)	532
HpyCH4IV	ACGT	1 cut(s)	421
HpyCH4V	TGCA	4 cut(s)	116, 393, 419, 434
HpyF10VI	GCNNNNNNNGC	1 cut(s)	390
HpySE526I	ACGT	1 cut(s)	421
Hsp92I	GRCGYC	1 cut(s)	457
Hsp92II	CATG	5 cut(s)	110, 379, 393, 464, 491
HspAI	GCGC	1 cut(s)	357
Kzo9I	GATC	3 cut(s)	25, 40, 576
LmnI	GCTCC	1 cut(s)	521
LpnPI	CCDG	7 cut(s)	60, 303, 459, 532, 569, 593, 606
Lsp1109I	GCAGC	3 cut(s)	128, 212, 346
LweI	GCATC	2 cut(s)	103, 496
MaeI	CTAG	2 cut(s)	324, 363
MaeII	ACGT	1 cut(s)	421
MalI	GATC	3 cut(s)	27, 42, 578
MboI	GATC	3 cut(s)	25, 40, 576
MboII	GAAGA	4 cut(s)	20, 219, 342, 608
MflI	RGATCY	2 cut(s)	25, 40
MluCI	AATT	6 cut(s)	86, 94, 146, 169, 295, 394
MlyI	GAGTC	1 cut(s)	333
MmeI	TCCRAC	1 cut(s)	206
MnlI	CCTC	7 cut(s)	46, 73, 131, 195, 378, 447, 616
MseI	TTAA	1 cut(s)	230
MslI	CAYNNNNRTG	1 cut(s)	111
MspI	CCGG	1 cut(s)	519
MspR9I	CCNGG	1 cut(s)	519
Mva1269I	GAATGC	1 cut(s)	167
MvnI	CGCG	2 cut(s)	187, 357
MwoI	GCNNNNNNNGC	1 cut(s)	390
NciI	CCSGG	1 cut(s)	519
NcoI	CCATGG	1 cut(s)	487
NdeII	GATC	3 cut(s)	25, 40, 576
NlaIII	CATG	5 cut(s)	110, 379, 393, 464, 491
NlaIV	GGNNCC	2 cut(s)	517, 523
NspI	RCATGY	1 cut(s)	393
PagI	TCATGA	1 cut(s)	106
PctI	GAATGC	1 cut(s)	167
PfeI	GAWTC	3 cut(s)	14, 103, 553
PflMI	CCANNNNNTGG	1 cut(s)	500
PkrI	GCNGC	3 cut(s)	118, 227, 361
PleI	GAGTC	1 cut(s)	333
PpsI	GAGTC	1 cut(s)	333
PsiI	TTATAA	1 cut(s)	152
PspN4I	GGNNCC	2 cut(s)	517, 523
PspPI	GGNCC	4 cut(s)	81, 287, 491, 515
PsuI	RGATCY	2 cut(s)	25, 40
RsaI	GTAC	2 cut(s)	239, 388
RsaNI	GTAC	2 cut(s)	238, 387
RseI	CAYNNNNRTG	1 cut(s)	111
SaqAI	TTAA	1 cut(s)	230
SatI	GCNGC	3 cut(s)	117, 226, 360
Sau3AI	GATC	3 cut(s)	25, 40, 576
Sau96I	GGNCC	4 cut(s)	81, 287, 491, 515
SchI	GAGTC	1 cut(s)	333
ScrFI	CCNGG	1 cut(s)	519
SetI	ASST	5 cut(s)	270, 310, 325, 370, 424
SfaNI	GCATC	2 cut(s)	103, 496
SinI	GGWCC	2 cut(s)	81, 287
SmiMI	CAYNNNNRTG	1 cut(s)	111
Sse9I	AATT	6 cut(s)	86, 94, 146, 169, 295, 394
SsiI	CCGC	2 cut(s)	349, 379
SspMI	CTAG	2 cut(s)	324, 363
StyD4I	CCNGG	1 cut(s)	517
StyI	CCWWGG	1 cut(s)	487
TaaI	ACNGT	1 cut(s)	532
TaiI	ACGT	1 cut(s)	424
TaqI	TCGA	1 cut(s)	337
TaqII	GACCGA	1 cut(s)	150
TasI	AATT	6 cut(s)	86, 94, 146, 169, 295, 394
TatI	WGTACW	1 cut(s)	386
TfiI	GAWTC	3 cut(s)	14, 103, 553
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TscAI	CASTG	1 cut(s)	54
TseI	GCWGC	3 cut(s)	116, 225, 359
TspDTI	ATGAA	1 cut(s)	182
TspRI	CASTG	1 cut(s)	54
Van91I	CCANNNNNTGG	1 cut(s)	500
VpaK11BI	GGWCC	2 cut(s)	81, 287
XapI	RAATTY	3 cut(s)	86, 146, 169
XceI	RCATGY	1 cut(s)	393
XmiI	GTMKAC	1 cut(s)	141
XspI	CTAG	2 cut(s)	324, 363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.