Rorug04G0076000

SWIM zinc finger family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0002808
Physical Location & Seq
Forward (+)
11659232 .. 11659879
648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0076000.1

Sequence Viewer

Length: 648 bp
ATGATGTCAGAAACCAAAGATGCATATGAAAAATATATTGAGGACTTGATCGATGGGGAGGAGAGGTGTTGGCAGATGGATTTAATTGAGGACTTGTTTTCAGCTGAAGAGGTCAGAATTATCTCCAGTATTCCACTTAGCTTAAGACCTTCGGAGGACAGATTGGTATGGCATTTCAATAGGAAAGGGGTGTATAACGTCAAAAGTGGGTATCATGCAATGAGGACGTGGAGAGGAGTTGGAGTTCAGGCTTCAACGTCTAGCGTCGTTTGGGGGGGGGGTGGTGTTGCAGTAAGTAAGTATTGGGGCATTGTCTGGAAAGCTAGGGTGCCTCCTAAAATACGGATTTTTACTTGGCGTCTGTTGCGTGGAATATTGCCTCCACGAACAGCCTTGGGGTCTAAACATGTGGTCTTGCCAGATTACAAGTGTGTCTTCTGTCGAAGGGAGTTCGAAACAGGTTTGCATCTTTTTAAGTGTTGTTCTGCTGTGGAAAACTTTTGGTCGGCTTCTTCTCTTGGCATGAATGTAGTGGACCACCCAGCTTCTACTTTGTCTGGCTGGATGTTTGATATGTTGGATAAAATGGGGGAGGAGCAGGTCAACATTTTTATCACTATTATGGGCCTTGTGGTCAGAACGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

215

Amino Acids

24.59

Weight (kDa)

7.66

Isoelectric Point (pI)

38.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 99 - 168 1.2e-13 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 589
AccB1I GGYRCC 1 cut(s) 328
AcuI CTGAAG 1 cut(s) 126
AcyI GRCGYC 1 cut(s) 358
AflII CTTAAG 1 cut(s) 142
AflIII ACRYGT 1 cut(s) 406
AgsI TTSAA 2 cut(s) 178, 255
AjiI CACGTC 1 cut(s) 228
AloI GAACNNNNNNTCC 2 cut(s) 228, 260
AluBI AGCT 4 cut(s) 104, 141, 323, 545
AluI AGCT 4 cut(s) 104, 141, 323, 545
AoxI GGCC 1 cut(s) 625
AspS9I GGNCC 2 cut(s) 535, 625
AsuII TTCGAA 1 cut(s) 453
AvaII GGWCC 1 cut(s) 535
BanI GGYRCC 1 cut(s) 328
BbsI GAAGAC 1 cut(s) 427
BccI CCATC 2 cut(s) 47, 70
BfaI CTAG 2 cut(s) 261, 324
BfrI CTTAAG 1 cut(s) 142
BfuAI ACCTGC 1 cut(s) 589
Bme18I GGWCC 1 cut(s) 535
BmgBI CACGTC 1 cut(s) 228
BmgT120I GGNCC 2 cut(s) 535, 625
BmiI GGNNCC 1 cut(s) 330
BmsI GCATC 2 cut(s) 10, 475
BpiI GAAGAC 1 cut(s) 427
BpmI CTGGAG 1 cut(s) 109
Bpu14I TTCGAA 1 cut(s) 453
Bsa29I ATCGAT 1 cut(s) 51
BsaHI GRCGYC 1 cut(s) 358
BsaJI CCNNGG 1 cut(s) 393
BsaXI ACNNNNNCTCC 4 cut(s) 50, 80, 228, 258
Bse1I ACTGG 1 cut(s) 126
Bse3DI GCAATG 1 cut(s) 225
BseCI ATCGAT 1 cut(s) 51
BseDI CCNNGG 1 cut(s) 393
BseGI GGATG 1 cut(s) 570
BseMI GCAATG 1 cut(s) 225
BseNI ACTGG 1 cut(s) 126
BseRI GAGGAG 3 cut(s) 74, 249, 608
BseYI CCCAGC 1 cut(s) 541
BshFI GGCC 1 cut(s) 627
BshNI GGYRCC 1 cut(s) 328
BshVI ATCGAT 1 cut(s) 51
BsnI GGCC 1 cut(s) 627
Bsp119I TTCGAA 1 cut(s) 453
Bsp143I GATC 1 cut(s) 48
BspANI GGCC 1 cut(s) 627
BspDI ATCGAT 1 cut(s) 51
BspLI GGNNCC 1 cut(s) 330
BspMI ACCTGC 1 cut(s) 589
BspT104I TTCGAA 1 cut(s) 453
BspT107I GGYRCC 1 cut(s) 328
BspTI CTTAAG 1 cut(s) 142
BsrDI GCAATG 1 cut(s) 225
BsrI ACTGG 1 cut(s) 126
BssECI CCNNGG 1 cut(s) 393
BssMI GATC 1 cut(s) 48
BssNI GRCGYC 1 cut(s) 358
BssT1I CCWWGG 1 cut(s) 393
Bst6I CTCTTC 1 cut(s) 102
BstACI GRCGYC 1 cut(s) 358
BstAFI CTTAAG 1 cut(s) 142
BstBI TTCGAA 1 cut(s) 453
BstDEI CTNAG 1 cut(s) 137
BstF5I GGATG 1 cut(s) 570
BstKTI GATC 1 cut(s) 51
BstMBI GATC 1 cut(s) 48
BstMWI GCNNNNNNNGC 1 cut(s) 364
BstNSI RCATGY 1 cut(s) 410
BstV2I GAAGAC 1 cut(s) 427
Bsu15I ATCGAT 1 cut(s) 51
BsuRI GGCC 1 cut(s) 627
BsuTUI ATCGAT 1 cut(s) 51
BtrI CACGTC 1 cut(s) 228
BtsCI GGATG 1 cut(s) 570
BveI ACCTGC 1 cut(s) 589
Cfr13I GGNCC 2 cut(s) 535, 625
ClaI ATCGAT 1 cut(s) 51
CseI GACGC 2 cut(s) 253, 347
CviAII CATG 3 cut(s) 215, 407, 523
CviJI RGCY 9 cut(s) 104, 141, 251, 323, 392, 509, 545, 561, 627
CviKI_1 RGCY 9 cut(s) 104, 141, 251, 323, 392, 509, 545, 561, 627
DdeI CTNAG 1 cut(s) 137
DpnI GATC 1 cut(s) 50
DpnII GATC 1 cut(s) 48
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
Eco130I CCWWGG 1 cut(s) 393
Eco47I GGWCC 1 cut(s) 535
Eco57I CTGAAG 1 cut(s) 126
EcoT14I CCWWGG 1 cut(s) 393
EcoT22I ATGCAT 1 cut(s) 25
ErhI CCWWGG 1 cut(s) 393
FaeI CATG 3 cut(s) 218, 410, 526
FalI AAGNNNNNCTT 2 cut(s) 419, 451
FatI CATG 3 cut(s) 214, 406, 522
FauNDI CATATG 1 cut(s) 25
FokI GGATG 1 cut(s) 577
FspBI CTAG 2 cut(s) 261, 324
GsaI CCCAGC 1 cut(s) 545
GsuI CTGGAG 1 cut(s) 109
HaeIII GGCC 1 cut(s) 627
HgaI GACGC 2 cut(s) 253, 347
Hin1I GRCGYC 1 cut(s) 358
Hin1II CATG 3 cut(s) 218, 410, 526
HincII GTYRAC 1 cut(s) 604
HindII GTYRAC 1 cut(s) 604
Hpy166II GTNNAC 2 cut(s) 535, 604
Hpy188I TCNGA 4 cut(s) 10, 116, 154, 638
Hpy188III TCNNGA 1 cut(s) 316
Hpy8I GTNNAC 2 cut(s) 535, 604
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 2 cut(s) 159, 438
HpyCH4IV ACGT 3 cut(s) 198, 227, 257
HpyCH4V TGCA 4 cut(s) 23, 218, 290, 466
HpyF10VI GCNNNNNNNGC 1 cut(s) 364
HpyF3I CTNAG 1 cut(s) 137
HpySE526I ACGT 3 cut(s) 198, 227, 257
Hsp92I GRCGYC 1 cut(s) 358
Hsp92II CATG 3 cut(s) 218, 410, 526
Kzo9I GATC 1 cut(s) 48
LmnI GCTCC 1 cut(s) 595
LpnPI CCDG 9 cut(s) 139, 233, 301, 432, 444, 543, 547, 555, 584
LweI GCATC 2 cut(s) 10, 475
MaeI CTAG 2 cut(s) 261, 324
MaeII ACGT 3 cut(s) 198, 227, 257
MalI GATC 1 cut(s) 50
MboI GATC 1 cut(s) 48
MboII GAAGA 3 cut(s) 119, 427, 504
MluCI AATT 2 cut(s) 84, 117
MmeI TCCRAC 2 cut(s) 220, 558
Mph1103I ATGCAT 1 cut(s) 25
MseI TTAA 3 cut(s) 83, 143, 474
MslI CAYNNNNRTG 1 cut(s) 620
MspA1I CMGCKG 1 cut(s) 104
MspCI CTTAAG 1 cut(s) 142
MwoI GCNNNNNNNGC 1 cut(s) 364
NdeI CATATG 1 cut(s) 25
NdeII GATC 1 cut(s) 48
NlaIII CATG 3 cut(s) 218, 410, 526
NlaIV GGNNCC 1 cut(s) 330
NsiI ATGCAT 1 cut(s) 25
NspI RCATGY 1 cut(s) 410
NspV TTCGAA 1 cut(s) 453
PciI ACATGT 1 cut(s) 406
PscI ACATGT 1 cut(s) 406
PspFI CCCAGC 1 cut(s) 541
PspN4I GGNNCC 1 cut(s) 330
PspPI GGNCC 2 cut(s) 535, 625
PvuII CAGCTG 1 cut(s) 104
RseI CAYNNNNRTG 1 cut(s) 620
SaqAI TTAA 3 cut(s) 83, 143, 474
Sau3AI GATC 1 cut(s) 48
Sau96I GGNCC 2 cut(s) 535, 625
SfaNI GCATC 2 cut(s) 10, 475
SfuI TTCGAA 1 cut(s) 453
SinI GGWCC 1 cut(s) 535
SmiMI CAYNNNNRTG 1 cut(s) 620
SmlI CTYRAG 1 cut(s) 142
SmoI CTYRAG 1 cut(s) 142
Sse9I AATT 2 cut(s) 84, 117
SspI AATATT 1 cut(s) 375
SspMI CTAG 2 cut(s) 261, 324
StyI CCWWGG 1 cut(s) 393
TaiI ACGT 3 cut(s) 201, 230, 260
TaqI TCGA 3 cut(s) 51, 442, 453
TasI AATT 2 cut(s) 84, 117
Tru1I TTAA 3 cut(s) 83, 143, 474
Tru9I TTAA 3 cut(s) 83, 143, 474
TspDTI ATGAA 2 cut(s) 42, 539
TspGWI ACGGA 1 cut(s) 358
Vha464I CTTAAG 1 cut(s) 142
VpaK11BI GGWCC 1 cut(s) 535
XceI RCATGY 1 cut(s) 410
XspI CTAG 2 cut(s) 261, 324
Zsp2I ATGCAT 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.