Rorug03G0293700

SWIM zinc finger family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0002808
Physical Location & Seq
Forward (+)
30152244 .. 30153143
900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0293700.1

Sequence Viewer

Length: 900 bp
ATGGAGGCTGAACTTAAGAATGGAGCTTCATATACTTGGCGTAGTATCATTGCTGGAAGAGAGGTGTTGAAAAAAGGTGTACGTTTTCAGGTTGGGGATGGATGCGACATTTCGGTCTGGAGGGATCCATGGCTCAGTCTACCTTATTCGTTCAAATCTTTTTCACCCATGATGGAGGGAACAGAGGACATGGTTGTGGCAGAACTAATAGATGATGAGAACAAAGAATGGCTTATTGATATTCTAATGGAGTTGTTTACTGATGAGGAGGTGAAGAGAATTGCATGTACCCCTTTGAGCATTAGAGGTGGTGCAGACAGATTAATATGGCACCATAATCCCAAGGGTGTGTTTACGGTTCAAAGTGGTTATCATGTTTACCTTCACTCCTTGAAGTGTAATGAAAGGGCGTCGTCCTCGAATGATGGAGATGGTAATGGTCTACGGAAATATTGGAACATGGTTTGGTCTGCATGGGTGCCTCCTAAAGTACGTAGCTTTGCATGGCGGCTATTGCATGGCATAATTCCCACTAGAGCTACACTAGCTCAGCGCCATGTGCCCCTTCTTGATTTGAGATGTATTTTCTGCTCCAAGGAGATTGAGACAGGTACACATGTCTTTAAAAATTGTTCTGCCTTACAATGTTTTTGGGAACTGGGGCCTTTGAAATTGCATGCTAAAAGTCATCCAGCAAGAGGTGTGAAGGAGTGGGTTTTTGAATTGATGGACACGTTGGACAAAGCCCAGATTGATCTAGTGTTGATGTGCCTGTGGACTATATGGACGGAGAGAAATAATATGGTGTGGAGGAGTACCTATTTCCAGCCGATGCATATGATTCAGTGGGCTTTTAGACATTTGGAGGAGTACCAAAAATTCAATCTTAAGGTGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

299

Amino Acids

34.87

Weight (kDa)

7.64

Isoelectric Point (pI)

29.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 150 - 218 5.6e-16 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 113
AccB1I GGYRCC 2 cut(s) 330, 478
AccI GTMKAC 2 cut(s) 139, 442
AciI CCGC 1 cut(s) 508
AclWI GGATC 2 cut(s) 119, 132
AcsI RAATTY 1 cut(s) 878
AcyI GRCGYC 1 cut(s) 410
AfaI GTAC 6 cut(s) 81, 289, 492, 613, 817, 872
AfiI CCNNNNNNNGG 1 cut(s) 698
AflII CTTAAG 2 cut(s) 14, 887
AflIII ACRYGT 2 cut(s) 616, 732
AgsI TTSAA 7 cut(s) 70, 154, 362, 394, 670, 722, 883
AluBI AGCT 4 cut(s) 26, 498, 539, 548
AluI AGCT 4 cut(s) 26, 498, 539, 548
Alw26I GTCTC 1 cut(s) 599
AlwI GGATC 2 cut(s) 119, 132
AoxI GGCC 1 cut(s) 662
ApoI RAATTY 1 cut(s) 878
AseI ATTAAT 1 cut(s) 323
AspLEI GCGC 1 cut(s) 555
AspS9I GGNCC 1 cut(s) 662
AsuHPI GGTGA 2 cut(s) 156, 283
BaeGI GKGCMC 1 cut(s) 564
BaeI ACNNNNGTAYC 2 cut(s) 603, 636
BamHI GGATCC 1 cut(s) 124
BanI GGYRCC 2 cut(s) 330, 478
BccI CCATC 5 cut(s) 92, 166, 419, 425, 721
BcoDI GTCTC 1 cut(s) 599
BfaI CTAG 3 cut(s) 534, 545, 758
BfoI RGCGCY 1 cut(s) 556
BfrI CTTAAG 2 cut(s) 14, 887
BisI GCNGC 1 cut(s) 509
BlpI GCTNAGC 1 cut(s) 549
BlsI GCNGC 1 cut(s) 510
BmgT120I GGNCC 1 cut(s) 662
BmiI GGNNCC 4 cut(s) 126, 332, 480, 663
BmrI ACTGGG 1 cut(s) 668
BmsI GCATC 2 cut(s) 92, 822
BmuI ACTGGG 1 cut(s) 668
BpmI CTGGAG 1 cut(s) 139
Bpu1102I GCTNAGC 1 cut(s) 549
BsaAI YACGTR 1 cut(s) 494
BsaHI GRCGYC 1 cut(s) 410
BsaJI CCNNGG 3 cut(s) 128, 342, 594
BsaXI ACNNNNNCTCC 2 cut(s) 371, 401
Bsc4I CCNNNNNNNGG 1 cut(s) 698
Bse1I ACTGG 1 cut(s) 663
Bse3DI GCAATG 1 cut(s) 48
BseDI CCNNGG 3 cut(s) 128, 342, 594
BseGI GGATG 3 cut(s) 103, 107, 688
BseLI CCNNNNNNNGG 1 cut(s) 698
BseMI GCAATG 1 cut(s) 48
BseMII CTCAG 2 cut(s) 148, 563
BseNI ACTGG 1 cut(s) 663
BseRI GAGGAG 3 cut(s) 281, 826, 881
BseSI GKGCMC 1 cut(s) 564
BsgI GTGCAG 1 cut(s) 333
BshFI GGCC 1 cut(s) 664
BshNI GGYRCC 2 cut(s) 330, 478
BslI CCNNNNNNNGG 1 cut(s) 698
BsmAI GTCTC 1 cut(s) 599
BsnI GGCC 1 cut(s) 664
Bsp1286I GDGCHC 1 cut(s) 564
Bsp143I GATC 2 cut(s) 124, 754
Bsp1720I GCTNAGC 1 cut(s) 549
Bsp19I CCATGG 1 cut(s) 128
BspACI CCGC 1 cut(s) 508
BspANI GGCC 1 cut(s) 664
BspCNI CTCAG 2 cut(s) 147, 562
BspLI GGNNCC 4 cut(s) 126, 332, 480, 663
BspPI GGATC 2 cut(s) 119, 132
BspT107I GGYRCC 2 cut(s) 330, 478
BspTI CTTAAG 2 cut(s) 14, 887
BsrDI GCAATG 1 cut(s) 48
BsrI ACTGG 1 cut(s) 663
BssECI CCNNGG 3 cut(s) 128, 342, 594
BssMI GATC 2 cut(s) 124, 754
BssNI GRCGYC 1 cut(s) 410
BssT1I CCWWGG 3 cut(s) 128, 342, 594
Bst4CI ACNGT 1 cut(s) 358
Bst6I CTCTTC 2 cut(s) 52, 269
BstACI GRCGYC 1 cut(s) 410
BstAFI CTTAAG 2 cut(s) 14, 887
BstBAI YACGTR 1 cut(s) 494
BstC8I GCNNGC 1 cut(s) 678
BstDEI CTNAG 2 cut(s) 134, 549
BstDSI CCRYGG 1 cut(s) 128
BstF5I GGATG 3 cut(s) 103, 107, 688
BstH2I RGCGCY 1 cut(s) 556
BstHHI GCGC 1 cut(s) 555
BstKTI GATC 2 cut(s) 127, 757
BstMAI GTCTC 1 cut(s) 599
BstMBI GATC 2 cut(s) 124, 754
BstMWI GCNNNNNNNGC 3 cut(s) 514, 545, 559
BstNSI RCATGY 3 cut(s) 288, 620, 680
BstSLI GKGCMC 1 cut(s) 564
BstSNI TACGTA 1 cut(s) 494
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
BsuRI GGCC 1 cut(s) 664
BtgI CCRYGG 1 cut(s) 128
BtsCI GGATG 3 cut(s) 103, 107, 688
BtsIMutI CAGTG 1 cut(s) 851
Cac8I GCNNGC 1 cut(s) 678
CfoI GCGC 1 cut(s) 555
Cfr13I GGNCC 1 cut(s) 662
CseI GACGC 1 cut(s) 399
Csp6I GTAC 6 cut(s) 80, 288, 491, 612, 816, 871
CviQI GTAC 6 cut(s) 80, 288, 491, 612, 816, 871
DdeI CTNAG 2 cut(s) 134, 549
DpnI GATC 2 cut(s) 126, 756
DpnII GATC 2 cut(s) 124, 754
DraI TTTAAA 1 cut(s) 625
DrdI GACNNNNNNGTC 1 cut(s) 113
DseDI GACNNNNNNGTC 1 cut(s) 113
Eam1104I CTCTTC 2 cut(s) 52, 269
EarI CTCTTC 2 cut(s) 52, 269
Eco105I TACGTA 1 cut(s) 494
Eco130I CCWWGG 3 cut(s) 128, 342, 594
EcoO109I RGGNCCY 1 cut(s) 662
EcoT14I CCWWGG 3 cut(s) 128, 342, 594
EcoT22I ATGCAT 1 cut(s) 837
ErhI CCWWGG 3 cut(s) 128, 342, 594
FalI AAGNNNNNCTT 2 cut(s) 216, 248
FauNDI CATATG 1 cut(s) 837
FblI GTMKAC 2 cut(s) 139, 442
Fnu4HI GCNGC 1 cut(s) 509
FokI GGATG 3 cut(s) 110, 114, 675
Fsp4HI GCNGC 1 cut(s) 509
FspBI CTAG 3 cut(s) 534, 545, 758
GlaI GCGC 1 cut(s) 554
GluI GCNGC 1 cut(s) 509
GsuI CTGGAG 1 cut(s) 139
HaeII RGCGCY 1 cut(s) 556
HaeIII GGCC 1 cut(s) 664
HgaI GACGC 1 cut(s) 399
HhaI GCGC 1 cut(s) 555
Hin1I GRCGYC 1 cut(s) 410
Hin6I GCGC 1 cut(s) 553
HinP1I GCGC 1 cut(s) 553
HinfI GANTC 1 cut(s) 841
HphI GGTGA 2 cut(s) 156, 283
Hpy166II GTNNAC 8 cut(s) 80, 140, 258, 354, 379, 443, 614, 777
Hpy188III TCNNGA 2 cut(s) 118, 569
Hpy8I GTNNAC 8 cut(s) 80, 140, 258, 354, 379, 443, 614, 777
Hpy99I CGWCG 1 cut(s) 415
HpyAV CCTTC 3 cut(s) 392, 575, 700
HpyCH4III ACNGT 1 cut(s) 358
HpyCH4IV ACGT 3 cut(s) 82, 493, 734
HpyCH4V TGCA 7 cut(s) 284, 314, 473, 503, 517, 676, 835
HpyF10VI GCNNNNNNNGC 3 cut(s) 514, 545, 559
HpyF3I CTNAG 2 cut(s) 134, 549
HpySE526I ACGT 3 cut(s) 82, 493, 734
Hsp92I GRCGYC 1 cut(s) 410
HspAI GCGC 1 cut(s) 553
Kzo9I GATC 2 cut(s) 124, 754
LmnI GCTCC 2 cut(s) 23, 596
LpnPI CCDG 9 cut(s) 39, 74, 103, 594, 644, 705, 761, 785, 839
LweI GCATC 2 cut(s) 92, 822
MaeI CTAG 3 cut(s) 534, 545, 758
MaeII ACGT 3 cut(s) 82, 493, 734
MalI GATC 2 cut(s) 126, 756
MboI GATC 2 cut(s) 124, 754
MboII GAAGA 2 cut(s) 69, 286
MflI RGATCY 1 cut(s) 124
MhlI GDGCHC 1 cut(s) 564
MluCI AATT 6 cut(s) 279, 525, 628, 671, 722, 878
MmeI TCCRAC 1 cut(s) 717
Mph1103I ATGCAT 1 cut(s) 837
MseI TTAA 4 cut(s) 15, 323, 624, 888
MslI CAYNNNNRTG 1 cut(s) 194
MspCI CTTAAG 2 cut(s) 14, 887
MwoI GCNNNNNNNGC 3 cut(s) 514, 545, 559
NcoI CCATGG 1 cut(s) 128
NdeI CATATG 1 cut(s) 837
NdeII GATC 2 cut(s) 124, 754
NlaIV GGNNCC 4 cut(s) 126, 332, 480, 663
NsiI ATGCAT 1 cut(s) 837
NspI RCATGY 3 cut(s) 288, 620, 680
PaeI GCATGC 1 cut(s) 680
PciI ACATGT 1 cut(s) 616
PfeI GAWTC 1 cut(s) 841
PkrI GCNGC 1 cut(s) 510
Ppu21I YACGTR 1 cut(s) 494
PscI ACATGT 1 cut(s) 616
PshBI ATTAAT 1 cut(s) 323
PspN4I GGNNCC 4 cut(s) 126, 332, 480, 663
PspPI GGNCC 1 cut(s) 662
PsuI RGATCY 1 cut(s) 124
RsaI GTAC 6 cut(s) 81, 289, 492, 613, 817, 872
RsaNI GTAC 6 cut(s) 80, 288, 491, 612, 816, 871
RseI CAYNNNNRTG 1 cut(s) 194
SaqAI TTAA 4 cut(s) 15, 323, 624, 888
SatI GCNGC 1 cut(s) 509
Sau3AI GATC 2 cut(s) 124, 754
Sau96I GGNCC 1 cut(s) 662
SduI GDGCHC 1 cut(s) 564
SfaNI GCATC 2 cut(s) 92, 822
SmiMI CAYNNNNRTG 1 cut(s) 194
SmlI CTYRAG 2 cut(s) 14, 887
SmoI CTYRAG 2 cut(s) 14, 887
SnaBI TACGTA 1 cut(s) 494
SphI GCATGC 1 cut(s) 680
Sse9I AATT 6 cut(s) 279, 525, 628, 671, 722, 878
SsiI CCGC 1 cut(s) 508
SspI AATATT 1 cut(s) 452
SspMI CTAG 3 cut(s) 534, 545, 758
StyI CCWWGG 3 cut(s) 128, 342, 594
TaaI ACNGT 1 cut(s) 358
TaiI ACGT 3 cut(s) 85, 496, 737
TaqI TCGA 1 cut(s) 419
TaqII GACCGA 1 cut(s) 103
TasI AATT 6 cut(s) 279, 525, 628, 671, 722, 878
TauI GCSGC 1 cut(s) 511
TfiI GAWTC 1 cut(s) 841
Tru1I TTAA 4 cut(s) 15, 323, 624, 888
Tru9I TTAA 4 cut(s) 15, 323, 624, 888
TscAI CASTG 1 cut(s) 851
TspDTI ATGAA 2 cut(s) 18, 417
TspGWI ACGGA 2 cut(s) 460, 803
TspRI CASTG 1 cut(s) 851
Vha464I CTTAAG 2 cut(s) 14, 887
VspI ATTAAT 1 cut(s) 323
XapI RAATTY 1 cut(s) 878
XceI RCATGY 3 cut(s) 288, 620, 680
XmiI GTMKAC 2 cut(s) 139, 442
XspI CTAG 3 cut(s) 534, 545, 758
Zsp2I ATGCAT 1 cut(s) 837
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.