Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014821

Physical Location & Seq

Genomic Coordinates Reverse (-)

53406162 .. 53410047

Gene Structure 3886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50697

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1860 bp

ATGCCTTATTACTGGTGTGTCAGAAAGATCATGTTTGATGTTGTGGAGGAATCAAAACCTTTCAGAAAATATGGAGTCAGTGCTTTACTATATTATGCCATGACAGGAACCTTAACAAGGTTCCATTCTAGAGCCAAGCAAGTGTTACTTTTACTGATGGACAACTCAACACTTGGTACGTTCGTGTGCTTTTTAAGAGATTGTCCGAGGAGTTGGACTCTAAAGGAGTTAAAGTTAATGTTCGAATGCTTATATCAGGAAATAAAGGGCTGTGTGATTAATGGAGATGTACTGCATTTAAGCCGGCTGCTGTCACTGCTTGTCTCTACTGTTCAGGTGAAGAATGGGACAACGGTTTCTGATTACAAACAAATGCTTGAAATTGGGGTTTTACTTGTGCAGACATATATCATACACTCTGGCATTCAGTTGGGAGAGGAACATTTATCTGAAGTTGTTGATAAGATTTTTCAGTTAATGCTCAGCATTCTTAGCGGACTACACACTTATAATGATTTGTCAACCATCTCTGGCTGTTCGTTGCAATGGGCTCCTGTATTTGATTTACAGAAGTCAAGCTTGTTGGGGTTTATTCAACAACTGCTACAAAAGGATATTTCTATAATAGATACCTTCCGAGTTAACATTTTAAGAGCCATGAATGTTTTAATAGAAACTTCAGAAGAAGATGTTATATATCTGTTACTCATCTTCTGTGAAAGAGTGCAAATGGGAGTGCAAAGCTTTAAGTTACTAGATGGATCACCTGAACTGTCAAGGATCCAATGTTTTCTGAGTGGCACGGTCAGTAATTGGGTTGGGCTTTTAAATGGTGTCGAGAATGGGGATTTATCATCTACTTCAATTCATGAAGCTGACTTGGCCTTGCTGTGGGGAAGCATTAACTGCTTTCTGCAAATAGTAGATTCCCAAGAAGGTCCATCCTTGTTATTCGATTTGACAGATGCAATCGATCAACCCCTGATGATTGAAGATGATATGGCTATGGATGCTTTAAAGATGTTTGCTGACAAAATGTGCCACTCAGACGGAGGGATTCGTGCTTCAACTATTAGAATATTATGCCACTTTGGAACTTTAAGTTGCGATATTGAGCCAGTTCTGAAAAAGATGAAAACTGAACTTTCTCCTAGTTCTCATGTCGATAACAAAGACTTTAATGTTATTCAGCTTCTTCTGTCAATCGAGTCAACTCCTCTTTCAATTTCTACCAGCAGAAAAGTTACACTATTGATTTCTAGAATACAGATGGGCCTCTCTGCTGGAAAAATATCTGAAGCTTATCTTCCCCTTGTTGTAAATGGGATGATTGGTATCTTCCATAACCGGTTTAGTCATCTTCGAAATCCTGTATCAGAGTGCCTTGCAGTTCTGATCAGCCAAAGTAATGGACTTGTATGGGAAAATTTTCACAACTATTTTGAGCAATGCCAGTCTGTATTTCAAGCATCTATTGATCAAGTTGGCCAAGTTGATACTGTGCTGTCCAACAAGTCAAGTGGTATAATATCACAATTGTATTGCTTTAAATTGACTCTACTTCCTTTGCTTTGGATGTTTCCCTTGATGCCCTACTTGCACGTACAGGTTTTGGAGTTGCTGGTTGAAGTTGAATTCATGAAGAAACGATTCCACAAGCATATCAGCAGTGTATTACAAGTGACTAAAAGCATCTTGCAGTCTGCCATCGATGCTGTCACTCATGATTCTCCTCATGAAACTGCCATTCCTTTCTGGAAAGAGGCATTTTATTCATTGGTTATGCTGGAAAAAATTCTGAATCAGTTCCATGATTTGAGTTTTGATAAGGATCTTGAGGTATGCCGCATCACTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DRIM

Protein Analysis

619

Amino Acids

69.99

Weight (kDa)

5.58

Isoelectric Point (pI)

43.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014821)

Species	Orthologous Gene IDs
malus_domestica	MD07G1101300.v1.1
rosa_chinensis	RchiOBHm_Chr2g0136151
rosa_laevigata	RLG00000019700
rosa_multiflora	Rmu_sc0002070.1_g000018 Rmu_sc0010188.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032180 Rroxscaffold_2G00114000 Rroxscaffold_2G00149490 Rroxscaffold_3G00257240 Rroxscaffold_5G00344950 Rroxscaffold_5G00350550 Rroxscaffold_6G00396420
rosa_samantha	Rh1AG093900 Rh1DG198000 Rh2BG403000 Rh2BG403100 Rh2CG371500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	510
AciI	CCGC	2 cut(s)	495, 1846
AclWI	GGATC	4 cut(s)	769, 775, 788, 1839
AcoI	YGGCCR	1 cut(s)	1486
AcsI	RAATTY	3 cut(s)	1426, 1634, 1794
AcuI	CTGAAG	3 cut(s)	471, 663, 1317
AfaI	GTAC	3 cut(s)	178, 291, 1605
AfiI	CCNNNNNNNGG	2 cut(s)	117, 891
AgeI	ACCGGT	1 cut(s)	1347
AgsI	TTSAA	9 cut(s)	380, 596, 864, 992, 1068, 1224, 1466, 1628, 1634
AluBI	AGCT	5 cut(s)	579, 744, 875, 1192, 1301
AluI	AGCT	5 cut(s)	579, 744, 875, 1192, 1301
Alw26I	GTCTC	1 cut(s)	328
AlwI	GGATC	4 cut(s)	769, 775, 788, 1839
AoxI	GGCC	3 cut(s)	882, 1273, 1486
ApeKI	GCWGC	1 cut(s)	307
ApoI	RAATTY	3 cut(s)	1426, 1634, 1794
AseI	ATTAAT	1 cut(s)	279
AsiGI	ACCGGT	1 cut(s)	1347
Asp700I	GAANNNNTTC	4 cut(s)	1428, 1649, 1794, 1805
AspS9I	GGNCC	2 cut(s)	938, 1273
AsuHPI	GGTGA	2 cut(s)	349, 756
AsuII	TTCGAA	2 cut(s)	243, 1363
AvaII	GGWCC	1 cut(s)	938
BaeI	ACNNNNGTAYC	2 cut(s)	168, 201
BalI	TGGCCA	1 cut(s)	1488
BamHI	GGATCC	1 cut(s)	780
BanII	GRGCYC	1 cut(s)	553
BbvI	GCAGC	1 cut(s)	294
BccI	CCATC	6 cut(s)	151, 533, 752, 949, 1264, 1715
BclI	TGATCA	2 cut(s)	1395, 1477
BcoDI	GTCTC	1 cut(s)	328
BfaI	CTAG	4 cut(s)	129, 755, 1152, 1260
BisI	GCNGC	2 cut(s)	308, 1846
BlpI	GCTNAGC	1 cut(s)	482
BlsI	GCNGC	2 cut(s)	309, 1847
Bme18I	GGWCC	1 cut(s)	938
BmgT120I	GGNCC	2 cut(s)	938, 1273
BmiI	GGNNCC	4 cut(s)	109, 122, 552, 782
BmsI	GCATC	6 cut(s)	955, 1000, 1478, 1578, 1701, 1702
BplI	GAGNNNNNCTC	2 cut(s)	202, 234
Bpu1102I	GCTNAGC	1 cut(s)	482
Bpu14I	TTCGAA	2 cut(s)	243, 1363
BpuEI	CTTGAG	1 cut(s)	1856
Bsa29I	ATCGAT	2 cut(s)	972, 1710
BsaAI	YACGTR	1 cut(s)	1603
BsaBI	GATNNNNATC	2 cut(s)	1334, 1830
BsaJI	CCNNGG	1 cut(s)	206
BsaWI	WCCGGW	1 cut(s)	1347
BsaXI	ACNNNNNCTCC	2 cut(s)	218, 248
Bsc4I	CCNNNNNNNGG	2 cut(s)	117, 891
Bse118I	RCCGGY	2 cut(s)	303, 1347
Bse1I	ACTGG	3 cut(s)	17, 1118, 1453
Bse3DI	GCAATG	2 cut(s)	551, 1454
Bse8I	GATNNNNATC	2 cut(s)	1334, 1830
BseCI	ATCGAT	2 cut(s)	972, 1710
BseDI	CCNNGG	1 cut(s)	206
BseGI	GGATG	4 cut(s)	941, 1015, 1332, 1581
BseJI	GATNNNNATC	2 cut(s)	1334, 1830
BseLI	CCNNNNNNNGG	2 cut(s)	117, 891
BseMI	GCAATG	2 cut(s)	551, 1454
BseMII	CTCAG	3 cut(s)	496, 785, 1059
BseNI	ACTGG	3 cut(s)	17, 1118, 1453
BseRI	GAGGAG	3 cut(s)	223, 1206, 1722
BseXI	GCAGC	1 cut(s)	294
BsgI	GTGCAG	1 cut(s)	419
BshFI	GGCC	3 cut(s)	884, 1275, 1488
BshTI	ACCGGT	1 cut(s)	1347
BshVI	ATCGAT	2 cut(s)	972, 1710
BsiSI	CCGG	2 cut(s)	304, 1348
BslFI	GGGAC	1 cut(s)	361
BslI	CCNNNNNNNGG	2 cut(s)	117, 891
BsmAI	GTCTC	1 cut(s)	328
BsmFI	GGGAC	1 cut(s)	361
BsmI	GAATGC	3 cut(s)	251, 423, 486
BsnI	GGCC	3 cut(s)	884, 1275, 1488
Bsp119I	TTCGAA	2 cut(s)	243, 1363
Bsp1286I	GDGCHC	1 cut(s)	553
Bsp143I	GATC	7 cut(s)	27, 761, 780, 973, 1395, 1477, 1831
Bsp1720I	GCTNAGC	1 cut(s)	482
BspACI	CCGC	2 cut(s)	495, 1846
BspANI	GGCC	3 cut(s)	884, 1275, 1488
BspCNI	CTCAG	3 cut(s)	495, 786, 1058
BspDI	ATCGAT	2 cut(s)	972, 1710
BspHI	TCATGA	4 cut(s)	868, 1638, 1723, 1735
BspLI	GGNNCC	4 cut(s)	109, 122, 552, 782
BspPI	GGATC	4 cut(s)	769, 775, 788, 1839
BspT104I	TTCGAA	2 cut(s)	243, 1363
BsrDI	GCAATG	2 cut(s)	551, 1454
BsrFI	RCCGGY	2 cut(s)	303, 1347
BsrI	ACTGG	3 cut(s)	17, 1118, 1453
BssAI	RCCGGY	2 cut(s)	303, 1347
BssECI	CCNNGG	1 cut(s)	206
BssMI	GATC	7 cut(s)	27, 761, 780, 973, 1395, 1477, 1831
Bst4CI	ACNGT	5 cut(s)	331, 355, 774, 805, 1501
BstAPI	GCANNNNNTGC	1 cut(s)	906
BstBAI	YACGTR	1 cut(s)	1603
BstBI	TTCGAA	2 cut(s)	243, 1363
BstC8I	GCNNGC	1 cut(s)	305
BstDEI	CTNAG	4 cut(s)	482, 491, 794, 1045
BstENI	CCTNNNNNAGG	1 cut(s)	115
BstF5I	GGATG	4 cut(s)	941, 1015, 1332, 1581
BstKTI	GATC	7 cut(s)	30, 764, 783, 976, 1398, 1480, 1834
BstMAI	GTCTC	1 cut(s)	328
BstMBI	GATC	7 cut(s)	27, 761, 780, 973, 1395, 1477, 1831
BstMWI	GCNNNNNNNGC	7 cut(s)	316, 492, 881, 906, 1010, 1597, 1712
BstV1I	GCAGC	1 cut(s)	294
BstX2I	RGATCY	2 cut(s)	780, 1831
BstXI	CCANNNNNNTGG	1 cut(s)	1409
BstYI	RGATCY	2 cut(s)	780, 1831
Bsu15I	ATCGAT	2 cut(s)	972, 1710
BsuRI	GGCC	3 cut(s)	884, 1275, 1488
BsuTUI	ATCGAT	2 cut(s)	972, 1710
BtsCI	GGATG	4 cut(s)	941, 1015, 1332, 1581
BtsI	GCAGTG	2 cut(s)	314, 1675
BtsIMutI	CAGTG	3 cut(s)	85, 314, 1675
Cac8I	GCNNGC	1 cut(s)	305
CciI	TCATGA	4 cut(s)	868, 1638, 1723, 1735
Cfr10I	RCCGGY	2 cut(s)	303, 1347
Cfr13I	GGNCC	2 cut(s)	938, 1273
ClaI	ATCGAT	2 cut(s)	972, 1710
Csp6I	GTAC	3 cut(s)	177, 290, 1604
CspAI	ACCGGT	1 cut(s)	1347
CspCI	CAANNNNNGTGG	2 cut(s)	1501, 1536
CviAII	CATG	9 cut(s)	31, 100, 658, 869, 1160, 1639, 1724, 1736, 1811
CviQI	GTAC	3 cut(s)	177, 290, 1604
DdeI	CTNAG	4 cut(s)	482, 491, 794, 1045
DpnI	GATC	7 cut(s)	29, 763, 782, 975, 1397, 1479, 1833
DpnII	GATC	7 cut(s)	27, 761, 780, 973, 1395, 1477, 1831
DraI	TTTAAA	3 cut(s)	828, 1017, 1549
EaeI	YGGCCR	1 cut(s)	1486
Eco24I	GRGCYC	1 cut(s)	553
Eco47I	GGWCC	1 cut(s)	938
Eco57I	CTGAAG	3 cut(s)	471, 663, 1317
EcoNI	CCTNNNNNAGG	1 cut(s)	115
EcoRI	GAATTC	1 cut(s)	1634
EcoT38I	GRGCYC	1 cut(s)	553
FaeI	CATG	9 cut(s)	34, 103, 661, 872, 1163, 1642, 1727, 1739, 1814
FalI	AAGNNNNNCTT	6 cut(s)	132, 164, 563, 595, 1290, 1322
FaqI	GGGAC	1 cut(s)	361
FatI	CATG	9 cut(s)	30, 99, 657, 868, 1159, 1638, 1723, 1735, 1810
FbaI	TGATCA	2 cut(s)	1395, 1477
Fnu4HI	GCNGC	2 cut(s)	308, 1846
FokI	GGATG	4 cut(s)	928, 1022, 1339, 1588
FriOI	GRGCYC	1 cut(s)	553
Fsp4HI	GCNGC	2 cut(s)	308, 1846
FspBI	CTAG	4 cut(s)	129, 755, 1152, 1260
GluI	GCNGC	2 cut(s)	308, 1846
HaeIII	GGCC	3 cut(s)	884, 1275, 1488
HapII	CCGG	2 cut(s)	304, 1348
Hin1II	CATG	9 cut(s)	34, 103, 661, 872, 1163, 1642, 1727, 1739, 1814
HincII	GTYRAC	3 cut(s)	522, 643, 1212
HindII	GTYRAC	3 cut(s)	522, 643, 1212
HindIII	AAGCTT	3 cut(s)	577, 742, 1299
HpaI	GTTAAC	1 cut(s)	643
HpaII	CCGG	2 cut(s)	304, 1348
HphI	GGTGA	2 cut(s)	349, 756
Hpy166II	GTNNAC	3 cut(s)	522, 643, 1212
Hpy8I	GTNNAC	3 cut(s)	522, 643, 1212
HpyAV	CCTTC	2 cut(s)	643, 929
HpyCH4III	ACNGT	5 cut(s)	331, 355, 774, 805, 1501
HpyCH4IV	ACGT	2 cut(s)	179, 1602
HpyF10VI	GCNNNNNNNGC	7 cut(s)	316, 492, 881, 906, 1010, 1597, 1712
HpyF3I	CTNAG	4 cut(s)	482, 491, 794, 1045
HpySE526I	ACGT	2 cut(s)	179, 1602
Hsp92II	CATG	9 cut(s)	34, 103, 661, 872, 1163, 1642, 1727, 1739, 1814
KroI	GCCGGC	1 cut(s)	303
KroNI	GCCGGC	1 cut(s)	305
Ksp22I	TGATCA	2 cut(s)	1395, 1477
KspAI	GTTAAC	1 cut(s)	643
Kzo9I	GATC	7 cut(s)	27, 761, 780, 973, 1395, 1477, 1831
LmnI	GCTCC	1 cut(s)	556
Lsp1109I	GCAGC	1 cut(s)	294
LweI	GCATC	6 cut(s)	955, 1000, 1478, 1578, 1701, 1702
MaeI	CTAG	4 cut(s)	129, 755, 1152, 1260
MaeII	ACGT	2 cut(s)	179, 1602
MaeIII	GTNAC	7 cut(s)	144, 312, 702, 750, 1243, 1681, 1717
MalI	GATC	7 cut(s)	29, 763, 782, 975, 1397, 1479, 1833
MboI	GATC	7 cut(s)	27, 761, 780, 973, 1395, 1477, 1831
MfeI	CAATTG	1 cut(s)	1535
MflI	RGATCY	2 cut(s)	780, 1831
MhlI	GDGCHC	1 cut(s)	553
MlsI	TGGCCA	1 cut(s)	1488
MluCI	AATT	9 cut(s)	381, 811, 864, 1224, 1426, 1535, 1550, 1634, 1794
MluNI	TGGCCA	1 cut(s)	1488
MlyI	GAGTC	4 cut(s)	84, 211, 1217, 1549
MmeI	TCCRAC	2 cut(s)	194, 1533
MnlI	CCTC	9 cut(s)	40, 201, 430, 1046, 1227, 1286, 1743, 1756, 1831
Mox20I	TGGCCA	1 cut(s)	1488
MroNI	GCCGGC	1 cut(s)	303
MroXI	GAANNNNTTC	4 cut(s)	1428, 1649, 1794, 1805
MscI	TGGCCA	1 cut(s)	1488
Msp20I	TGGCCA	1 cut(s)	1488
MspI	CCGG	2 cut(s)	304, 1348
MunI	CAATTG	1 cut(s)	1535
Mva1269I	GAATGC	3 cut(s)	251, 423, 486
MwoI	GCNNNNNNNGC	7 cut(s)	316, 492, 881, 906, 1010, 1597, 1712
NaeI	GCCGGC	1 cut(s)	305
NdeII	GATC	7 cut(s)	27, 761, 780, 973, 1395, 1477, 1831
NgoMIV	GCCGGC	1 cut(s)	303
NlaIII	CATG	9 cut(s)	34, 103, 661, 872, 1163, 1642, 1727, 1739, 1814
NlaIV	GGNNCC	4 cut(s)	109, 122, 552, 782
NmuCI	GTSAC	3 cut(s)	312, 1681, 1717
NspV	TTCGAA	2 cut(s)	243, 1363
PagI	TCATGA	4 cut(s)	868, 1638, 1723, 1735
PctI	GAATGC	3 cut(s)	251, 423, 486
PdiI	GCCGGC	1 cut(s)	305
PdmI	GAANNNNTTC	4 cut(s)	1428, 1649, 1794, 1805
PfeI	GAWTC	6 cut(s)	50, 926, 1057, 1650, 1727, 1801
PinAI	ACCGGT	1 cut(s)	1347
PkrI	GCNGC	2 cut(s)	309, 1847
PleI	GAGTC	4 cut(s)	83, 211, 1216, 1549
PpsI	GAGTC	4 cut(s)	83, 211, 1216, 1549
Ppu21I	YACGTR	1 cut(s)	1603
PshBI	ATTAAT	1 cut(s)	279
PsiI	TTATAA	1 cut(s)	510
PspN4I	GGNNCC	4 cut(s)	109, 122, 552, 782
PspPI	GGNCC	2 cut(s)	938, 1273
PsuI	RGATCY	2 cut(s)	780, 1831
RsaI	GTAC	3 cut(s)	178, 291, 1605
RsaNI	GTAC	3 cut(s)	177, 290, 1604
SatI	GCNGC	2 cut(s)	308, 1846
Sau3AI	GATC	7 cut(s)	27, 761, 780, 973, 1395, 1477, 1831
Sau96I	GGNCC	2 cut(s)	938, 1273
SchI	GAGTC	4 cut(s)	84, 211, 1217, 1549
SduI	GDGCHC	1 cut(s)	553
SfaNI	GCATC	6 cut(s)	955, 1000, 1478, 1578, 1701, 1702
SfuI	TTCGAA	2 cut(s)	243, 1363
SinI	GGWCC	1 cut(s)	938
SmlI	CTYRAG	1 cut(s)	1835
SmoI	CTYRAG	1 cut(s)	1835
Sse9I	AATT	9 cut(s)	381, 811, 864, 1224, 1426, 1535, 1550, 1634, 1794
SsiI	CCGC	2 cut(s)	495, 1846
SspI	AATATT	1 cut(s)	1080
SspMI	CTAG	4 cut(s)	129, 755, 1152, 1260
TaaI	ACNGT	5 cut(s)	331, 355, 774, 805, 1501
TaiI	ACGT	2 cut(s)	182, 1605
TaqI	TCGA	8 cut(s)	243, 837, 954, 972, 1164, 1206, 1363, 1710
TasI	AATT	9 cut(s)	381, 811, 864, 1224, 1426, 1535, 1550, 1634, 1794
TatI	WGTACW	1 cut(s)	289
TauI	GCSGC	1 cut(s)	1848
TfiI	GAWTC	6 cut(s)	50, 926, 1057, 1650, 1727, 1801
TscAI	CASTG	3 cut(s)	85, 321, 1675
TseFI	GTSAC	3 cut(s)	312, 1681, 1717
TseI	GCWGC	1 cut(s)	307
Tsp45I	GTSAC	3 cut(s)	312, 1681, 1717
TspDTI	ATGAA	8 cut(s)	674, 857, 885, 1148, 1627, 1655, 1752, 1764
TspGWI	ACGGA	1 cut(s)	1065
TspRI	CASTG	3 cut(s)	85, 321, 1675
VpaK11BI	GGWCC	1 cut(s)	938
VspI	ATTAAT	1 cut(s)	279
XagI	CCTNNNNNAGG	1 cut(s)	115
XapI	RAATTY	3 cut(s)	1426, 1634, 1794
XbaI	TCTAGA	2 cut(s)	128, 1259
XmnI	GAANNNNTTC	4 cut(s)	1428, 1649, 1794, 1805
XspI	CTAG	4 cut(s)	129, 755, 1152, 1260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.