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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD07G1101300.v1.1 |
| rosa_chinensis | RchiOBHm_Chr2g0136151 |
| rosa_laevigata | RLG00000019700 |
| rosa_multiflora | Rmu_sc0002070.1_g000018 Rmu_sc0010188.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00032180 Rroxscaffold_2G00114000 Rroxscaffold_2G00149490 Rroxscaffold_3G00257240 Rroxscaffold_5G00344950 Rroxscaffold_5G00350550 Rroxscaffold_6G00396420 |
| rosa_samantha | Rh1AG093900 Rh1DG198000 Rh2BG403000 Rh2BG403100 Rh2CG371500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 38 |
| AfaI | GTAC | 1 cut(s) | 203 |
| Ama87I | CYCGRG | 1 cut(s) | 42 |
| AsuC2I | CCSGG | 3 cut(s) | 43, 44, 93 |
| AvaI | CYCGRG | 1 cut(s) | 42 |
| BaeGI | GKGCMC | 1 cut(s) | 43 |
| BanI | GGYRCC | 1 cut(s) | 38 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 72, 104 |
| BbsI | GAAGAC | 1 cut(s) | 27 |
| BccI | CCATC | 1 cut(s) | 23 |
| BcnI | CCSGG | 3 cut(s) | 43, 44, 93 |
| Bme1390I | CCNGG | 3 cut(s) | 43, 44, 93 |
| BmeT110I | CYCGRG | 1 cut(s) | 42 |
| BmiI | GGNNCC | 1 cut(s) | 40 |
| BmrFI | CCNGG | 3 cut(s) | 43, 44, 93 |
| BpiI | GAAGAC | 1 cut(s) | 27 |
| BpuMI | CCSGG | 3 cut(s) | 43, 44, 93 |
| BsaJI | CCNNGG | 1 cut(s) | 42 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 129, 159 |
| BseDI | CCNNGG | 1 cut(s) | 42 |
| BseGI | GGATG | 1 cut(s) | 105 |
| BseSI | GKGCMC | 1 cut(s) | 43 |
| BshNI | GGYRCC | 1 cut(s) | 38 |
| BsiHKCI | CYCGRG | 1 cut(s) | 42 |
| BsiSI | CCGG | 2 cut(s) | 43, 92 |
| BsoBI | CYCGRG | 1 cut(s) | 42 |
| Bsp1286I | GDGCHC | 1 cut(s) | 43 |
| Bsp143I | GATC | 1 cut(s) | 195 |
| BspLI | GGNNCC | 1 cut(s) | 40 |
| BspT107I | GGYRCC | 1 cut(s) | 38 |
| BssECI | CCNNGG | 1 cut(s) | 42 |
| BssMI | GATC | 1 cut(s) | 195 |
| BstDEI | CTNAG | 1 cut(s) | 192 |
| BstF5I | GGATG | 1 cut(s) | 105 |
| BstKTI | GATC | 1 cut(s) | 198 |
| BstMBI | GATC | 1 cut(s) | 195 |
| BstNSI | RCATGY | 1 cut(s) | 223 |
| BstSCI | CCNGG | 3 cut(s) | 41, 42, 91 |
| BstSLI | GKGCMC | 1 cut(s) | 43 |
| BstV2I | GAAGAC | 1 cut(s) | 27 |
| BtsCI | GGATG | 1 cut(s) | 105 |
| Cfr9I | CCCGGG | 1 cut(s) | 42 |
| Csp6I | GTAC | 1 cut(s) | 202 |
| CviAII | CATG | 3 cut(s) | 17, 126, 220 |
| CviJI | RGCY | 3 cut(s) | 96, 150, 191 |
| CviKI_1 | RGCY | 3 cut(s) | 96, 150, 191 |
| CviQI | GTAC | 1 cut(s) | 202 |
| DdeI | CTNAG | 1 cut(s) | 192 |
| DpnI | GATC | 1 cut(s) | 197 |
| DpnII | GATC | 1 cut(s) | 195 |
| Eco88I | CYCGRG | 1 cut(s) | 42 |
| FaeI | CATG | 3 cut(s) | 20, 129, 223 |
| FaiI | YATR | 6 cut(s) | 18, 127, 157, 221, 231, 237 |
| FatI | CATG | 3 cut(s) | 16, 125, 219 |
| FokI | GGATG | 1 cut(s) | 112 |
| HapII | CCGG | 2 cut(s) | 43, 92 |
| Hin1II | CATG | 3 cut(s) | 20, 129, 223 |
| HpaII | CCGG | 2 cut(s) | 43, 92 |
| Hpy188I | TCNGA | 1 cut(s) | 212 |
| HpyAV | CCTTC | 1 cut(s) | 74 |
| HpyCH4IV | ACGT | 1 cut(s) | 204 |
| HpyCH4V | TGCA | 1 cut(s) | 223 |
| HpyF3I | CTNAG | 1 cut(s) | 192 |
| HpySE526I | ACGT | 1 cut(s) | 204 |
| Hsp92II | CATG | 3 cut(s) | 20, 129, 223 |
| Kzo9I | GATC | 1 cut(s) | 195 |
| LmnI | GCTCC | 1 cut(s) | 137 |
| LpnPI | CCDG | 4 cut(s) | 56, 61, 82, 105 |
| MaeII | ACGT | 1 cut(s) | 204 |
| MaeIII | GTNAC | 2 cut(s) | 87, 107 |
| MalI | GATC | 1 cut(s) | 197 |
| MboI | GATC | 1 cut(s) | 195 |
| MboII | GAAGA | 2 cut(s) | 32, 153 |
| MhlI | GDGCHC | 1 cut(s) | 43 |
| MmeI | TCCRAC | 1 cut(s) | 235 |
| MnlI | CCTC | 1 cut(s) | 241 |
| MspI | CCGG | 2 cut(s) | 43, 92 |
| MspR9I | CCNGG | 3 cut(s) | 43, 44, 93 |
| NciI | CCSGG | 3 cut(s) | 43, 44, 93 |
| NdeII | GATC | 1 cut(s) | 195 |
| NlaIII | CATG | 3 cut(s) | 20, 129, 223 |
| NlaIV | GGNNCC | 1 cut(s) | 40 |
| NmeAIII | GCCGAG | 1 cut(s) | 51 |
| NmuCI | GTSAC | 1 cut(s) | 107 |
| NspI | RCATGY | 1 cut(s) | 223 |
| PspN4I | GGNNCC | 1 cut(s) | 40 |
| RsaI | GTAC | 1 cut(s) | 203 |
| RsaNI | GTAC | 1 cut(s) | 202 |
| Sau3AI | GATC | 1 cut(s) | 195 |
| ScrFI | CCNGG | 3 cut(s) | 43, 44, 93 |
| SduI | GDGCHC | 1 cut(s) | 43 |
| SetI | ASST | 2 cut(s) | 40, 207 |
| SmaI | CCCGGG | 1 cut(s) | 44 |
| SspI | AATATT | 1 cut(s) | 51 |
| StyD4I | CCNGG | 3 cut(s) | 41, 42, 91 |
| TaiI | ACGT | 1 cut(s) | 207 |
| TaqI | TCGA | 2 cut(s) | 6, 198 |
| TaqII | GACCGA | 1 cut(s) | 111 |
| TseFI | GTSAC | 1 cut(s) | 107 |
| Tsp45I | GTSAC | 1 cut(s) | 107 |
| TspDTI | ATGAA | 2 cut(s) | 33, 153 |
| TspGWI | ACGGA | 1 cut(s) | 27 |
| TspMI | CCCGGG | 1 cut(s) | 42 |
| XceI | RCATGY | 1 cut(s) | 223 |
| XmaI | CCCGGG | 1 cut(s) | 42 |