Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0014821

Physical Location & Seq

Genomic Coordinates Reverse (-)

57138142 .. 57139454

Gene Structure 1313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG403100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGGACAACGGTTTCTGACATATATCATACACTCTGGCATTCAGTTGGGAGAGGAACATTTATCTGAAAAGTCAAGCTTGTTGGGGTTTATTCAACAGCTGCCACAAAAGGATATTTTTATAATAGATACCTTCCGAGTTAACATTTTAAGAGCCATGAATGTTTTAATAGAAACTTCAGAAGATGTTATATATCTGTTACTCATCTTCTGTGAAAGAGTGCAAATGGGAGCGCAAAGCTTTAAGTTACTAGATGGATCACCTGAACTGTCAAGGATCCAATGTTTTCTGAGTTGCATGGTCAGTAATTGGGTTGGGGTTTTAAAGGGTGTCGAGAATGGGGATTTATCATCTACTTCAATTCATGAAGCTGACTTGGCCCTGCTGTGGGGAATCATTAACTGCTTTCCGCAAATAGTAGATTCCCAAGAAGGTCCACCCTTGTTATTCGATTTGACAGATGCAATCGATCAACTCCTGATGATTGAAGATGGGAATATTGCAGGCTTTTCCAAACTTGGCAAATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DRIM

Protein Analysis

176

Amino Acids

19.59

Weight (kDa)

4.51

Isoelectric Point (pI)

43.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014821)

Species	Orthologous Gene IDs
malus_domestica	MD07G1101300.v1.1
rosa_chinensis	RchiOBHm_Chr2g0136151
rosa_laevigata	RLG00000019700
rosa_multiflora	Rmu_sc0002070.1_g000018 Rmu_sc0010188.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032180 Rroxscaffold_2G00114000 Rroxscaffold_2G00149490 Rroxscaffold_3G00257240 Rroxscaffold_5G00344950 Rroxscaffold_5G00350550 Rroxscaffold_6G00396420
rosa_samantha	Rh1AG093900 Rh1DG198000 Rh2BG403000 Rh2BG403100 Rh2CG371500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	122
AciI	CCGC	1 cut(s)	410
AclWI	GGATC	3 cut(s)	265, 271, 284
AcuI	CTGAAG	1 cut(s)	162
AfiI	CCNNNNNNNGG	2 cut(s)	387, 388
AgsI	TTSAA	3 cut(s)	95, 360, 488
AluBI	AGCT	4 cut(s)	78, 100, 240, 371
AluI	AGCT	4 cut(s)	78, 100, 240, 371
AlwI	GGATC	3 cut(s)	265, 271, 284
AoxI	GGCC	1 cut(s)	378
ApeKI	GCWGC	1 cut(s)	100
AspLEI	GCGC	1 cut(s)	235
AspS9I	GGNCC	2 cut(s)	379, 434
AsuHPI	GGTGA	1 cut(s)	252
AvaII	GGWCC	1 cut(s)	434
BamHI	GGATCC	1 cut(s)	276
BbvI	GCAGC	1 cut(s)	87
BccI	CCATC	2 cut(s)	248, 485
BfaI	CTAG	1 cut(s)	251
BisI	GCNGC	1 cut(s)	101
BlsI	GCNGC	1 cut(s)	102
Bme18I	GGWCC	1 cut(s)	434
BmgT120I	GGNCC	2 cut(s)	379, 434
BmiI	GGNNCC	1 cut(s)	278
BmsI	GCATC	1 cut(s)	451
Bsa29I	ATCGAT	1 cut(s)	468
Bsc4I	CCNNNNNNNGG	2 cut(s)	387, 388
BseCI	ATCGAT	1 cut(s)	468
BseLI	CCNNNNNNNGG	2 cut(s)	387, 388
BseMII	CTCAG	1 cut(s)	281
BseXI	GCAGC	1 cut(s)	87
BshFI	GGCC	1 cut(s)	380
BshVI	ATCGAT	1 cut(s)	468
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	2 cut(s)	387, 388
BsmFI	GGGAC	1 cut(s)	18
BsmI	GAATGC	1 cut(s)	39
BsnI	GGCC	1 cut(s)	380
Bsp143I	GATC	3 cut(s)	257, 276, 469
BspACI	CCGC	1 cut(s)	410
BspANI	GGCC	1 cut(s)	380
BspCNI	CTCAG	1 cut(s)	282
BspDI	ATCGAT	1 cut(s)	468
BspHI	TCATGA	1 cut(s)	364
BspLI	GGNNCC	1 cut(s)	278
BspPI	GGATC	3 cut(s)	265, 271, 284
BssMI	GATC	3 cut(s)	257, 276, 469
Bst4CI	ACNGT	2 cut(s)	12, 270
BstC8I	GCNNGC	1 cut(s)	505
BstDEI	CTNAG	1 cut(s)	290
BstHHI	GCGC	1 cut(s)	235
BstKTI	GATC	3 cut(s)	260, 279, 472
BstMBI	GATC	3 cut(s)	257, 276, 469
BstMWI	GCNNNNNNNGC	1 cut(s)	377
BstV1I	GCAGC	1 cut(s)	87
BstX2I	RGATCY	1 cut(s)	276
BstYI	RGATCY	1 cut(s)	276
Bsu15I	ATCGAT	1 cut(s)	468
BsuRI	GGCC	1 cut(s)	380
BsuTUI	ATCGAT	1 cut(s)	468
Cac8I	GCNNGC	1 cut(s)	505
CciI	TCATGA	1 cut(s)	364
CfoI	GCGC	1 cut(s)	235
Cfr13I	GGNCC	2 cut(s)	379, 434
ClaI	ATCGAT	1 cut(s)	468
CviAII	CATG	3 cut(s)	157, 298, 365
CviJI	RGCY	7 cut(s)	78, 100, 155, 240, 371, 380, 507
CviKI_1	RGCY	7 cut(s)	78, 100, 155, 240, 371, 380, 507
DdeI	CTNAG	1 cut(s)	290
DpnI	GATC	3 cut(s)	259, 278, 471
DpnII	GATC	3 cut(s)	257, 276, 469
DraI	TTTAAA	1 cut(s)	324
Eco47I	GGWCC	1 cut(s)	434
Eco57I	CTGAAG	1 cut(s)	162
FaeI	CATG	3 cut(s)	160, 301, 368
FaiI	YATR	9 cut(s)	22, 24, 29, 122, 158, 191, 193, 299, 366
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	3 cut(s)	156, 297, 364
Fnu4HI	GCNGC	1 cut(s)	101
Fsp4HI	GCNGC	1 cut(s)	101
FspBI	CTAG	1 cut(s)	251
GlaI	GCGC	1 cut(s)	234
GluI	GCNGC	1 cut(s)	101
HaeIII	GGCC	1 cut(s)	380
HhaI	GCGC	1 cut(s)	235
Hin1II	CATG	3 cut(s)	160, 301, 368
Hin6I	GCGC	1 cut(s)	233
HinP1I	GCGC	1 cut(s)	233
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HindIII	AAGCTT	2 cut(s)	76, 238
HinfI	GANTC	2 cut(s)	393, 422
HpaI	GTTAAC	1 cut(s)	142
HphI	GGTGA	1 cut(s)	252
Hpy166II	GTNNAC	2 cut(s)	142, 437
Hpy188I	TCNGA	5 cut(s)	18, 67, 137, 181, 291
Hpy188III	TCNNGA	3 cut(s)	334, 365, 478
Hpy8I	GTNNAC	2 cut(s)	142, 437
HpyAV	CCTTC	2 cut(s)	142, 425
HpyCH4III	ACNGT	2 cut(s)	12, 270
HpyCH4V	TGCA	4 cut(s)	223, 297, 464, 503
HpyF10VI	GCNNNNNNNGC	1 cut(s)	377
HpyF3I	CTNAG	1 cut(s)	290
Hsp92II	CATG	3 cut(s)	160, 301, 368
HspAI	GCGC	1 cut(s)	233
KspAI	GTTAAC	1 cut(s)	142
Kzo9I	GATC	3 cut(s)	257, 276, 469
LmnI	GCTCC	1 cut(s)	230
LpnPI	CCDG	5 cut(s)	21, 276, 395, 489, 491
Lsp1109I	GCAGC	1 cut(s)	87
LweI	GCATC	1 cut(s)	451
MaeI	CTAG	1 cut(s)	251
MaeIII	GTNAC	2 cut(s)	198, 246
MalI	GATC	3 cut(s)	259, 278, 471
MboI	GATC	3 cut(s)	257, 276, 469
MboII	GAAGA	3 cut(s)	194, 199, 500
MflI	RGATCY	1 cut(s)	276
MluCI	AATT	2 cut(s)	307, 360
MnlI	CCTC	1 cut(s)	46
MseI	TTAA	6 cut(s)	141, 149, 167, 243, 323, 399
MspA1I	CMGCKG	1 cut(s)	100
Mva1269I	GAATGC	1 cut(s)	39
MwoI	GCNNNNNNNGC	1 cut(s)	377
NdeII	GATC	3 cut(s)	257, 276, 469
NlaIII	CATG	3 cut(s)	160, 301, 368
NlaIV	GGNNCC	1 cut(s)	278
PagI	TCATGA	1 cut(s)	364
PctI	GAATGC	1 cut(s)	39
PfeI	GAWTC	2 cut(s)	393, 422
PkrI	GCNGC	1 cut(s)	102
PsiI	TTATAA	1 cut(s)	122
PspN4I	GGNNCC	1 cut(s)	278
PspPI	GGNCC	2 cut(s)	379, 434
PsuI	RGATCY	1 cut(s)	276
PvuII	CAGCTG	1 cut(s)	100
SaqAI	TTAA	6 cut(s)	141, 149, 167, 243, 323, 399
SatI	GCNGC	1 cut(s)	101
Sau3AI	GATC	3 cut(s)	257, 276, 469
Sau96I	GGNCC	2 cut(s)	379, 434
SetI	ASST	7 cut(s)	80, 102, 134, 242, 265, 373, 436
SfaNI	GCATC	1 cut(s)	451
SinI	GGWCC	1 cut(s)	434
Sse9I	AATT	2 cut(s)	307, 360
SsiI	CCGC	1 cut(s)	410
SspI	AATATT	1 cut(s)	499
SspMI	CTAG	1 cut(s)	251
TaaI	ACNGT	2 cut(s)	12, 270
TaqI	TCGA	3 cut(s)	333, 450, 468
TasI	AATT	2 cut(s)	307, 360
TfiI	GAWTC	2 cut(s)	393, 422
Tru1I	TTAA	6 cut(s)	141, 149, 167, 243, 323, 399
Tru9I	TTAA	6 cut(s)	141, 149, 167, 243, 323, 399
TseI	GCWGC	1 cut(s)	100
TspDTI	ATGAA	3 cut(s)	173, 353, 381
VpaK11BI	GGWCC	1 cut(s)	434
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.