Rroxscaffold_3G00257240

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0014821
Physical Location & Seq
Forward (+)
51625435 .. 51633222
7788 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00257240.1

Sequence Viewer

Length: 390 bp
ATGAGATGCTTTGTCAAAGGGTCAGCCAATAGTCCACTTTTACAATTTTCTGGCTATTCCGAATGTAATAATGACCCTGGAGATGGTGGTGGGAAAGGTGAACAAAAGCATAGGCAAATTCAGTTTTGTGGTAATGCTCGGCAGAAAGGAAAGTTACCGAGTTGGATGACGAGTGACCACCGAGCTCGGTCATGTGTGAATAGTAGATTGGCAGGCAAATTGCCTTTCATTGGTGCATTGTGCGGGGTGGACCGACGCAGGGGTTGGGCTCGTGCAAGGTGCTTGATGGGATGTGCGGGCTTCGGCGGTGCGGGGCAGGGAGGCGGGCCTCTCGTGCGGCTGGAAGAAGGATTTAGGCAGTGCGTTTGGGCAGCAAGTGGCCTAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

13.73

Weight (kDa)

9.85

Isoelectric Point (pI)

43.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 243, 296, 306, 311, 324, 337
AcsI RAATTY 1 cut(s) 117
AfiI CCNNNNNNNGG 3 cut(s) 83, 230, 259
AjnI CCWGG 1 cut(s) 76
AjuI GAANNNNNNNTTGG 2 cut(s) 191, 223
AluBI AGCT 1 cut(s) 185
AluI AGCT 1 cut(s) 185
Alw21I GWGCWC 1 cut(s) 187
AoxI GGCC 2 cut(s) 326, 379
ApeKI GCWGC 1 cut(s) 371
ApoI RAATTY 1 cut(s) 117
AspA2I CCTAGG 1 cut(s) 382
AspS9I GGNCC 2 cut(s) 250, 326
AsuHPI GGTGA 1 cut(s) 110
AvaII GGWCC 1 cut(s) 250
AvrII CCTAGG 1 cut(s) 382
BanII GRGCYC 2 cut(s) 187, 271
BauI CACGAG 2 cut(s) 270, 332
Bbv12I GWGCWC 1 cut(s) 187
BbvI GCAGC 1 cut(s) 383
BccI CCATC 2 cut(s) 77, 280
BciT130I CCWGG 1 cut(s) 78
BfaI CTAG 2 cut(s) 383, 388
BisI GCNGC 2 cut(s) 338, 372
BlnI CCTAGG 1 cut(s) 382
BlsI GCNGC 2 cut(s) 339, 373
Bme1390I CCNGG 1 cut(s) 78
Bme18I GGWCC 1 cut(s) 250
BmgT120I GGNCC 2 cut(s) 250, 326
BmrFI CCNGG 1 cut(s) 78
BpmI CTGGAG 1 cut(s) 99
BsaJI CCNNGG 2 cut(s) 76, 382
Bsc4I CCNNNNNNNGG 3 cut(s) 83, 230, 259
BseBI CCWGG 1 cut(s) 78
BseDI CCNNGG 2 cut(s) 76, 382
BseGI GGATG 2 cut(s) 171, 296
BseLI CCNNNNNNNGG 3 cut(s) 83, 230, 259
BseXI GCAGC 1 cut(s) 383
BshFI GGCC 2 cut(s) 328, 381
BsiHKAI GWGCWC 1 cut(s) 187
BslI CCNNNNNNNGG 3 cut(s) 83, 230, 259
BsnI GGCC 2 cut(s) 328, 381
Bsp1286I GDGCHC 2 cut(s) 187, 271
BspACI CCGC 6 cut(s) 243, 296, 306, 311, 324, 337
BspANI GGCC 2 cut(s) 328, 381
BssECI CCNNGG 2 cut(s) 76, 382
BssSI CACGAG 2 cut(s) 270, 332
BssT1I CCWWGG 1 cut(s) 382
Bst2BI CACGAG 2 cut(s) 270, 332
Bst2UI CCWGG 1 cut(s) 78
BstC8I GCNNGC 3 cut(s) 214, 298, 326
BstF5I GGATG 2 cut(s) 171, 296
BstMWI GCNNNNNNNGC 1 cut(s) 334
BstNI CCWGG 1 cut(s) 78
BstSCI CCNGG 1 cut(s) 76
BstV1I GCAGC 1 cut(s) 383
BsuRI GGCC 2 cut(s) 328, 381
BtsCI GGATG 2 cut(s) 171, 296
BtsI GCAGTG 1 cut(s) 365
BtsIMutI CAGTG 1 cut(s) 365
Cac8I GCNNGC 3 cut(s) 214, 298, 326
Cfr13I GGNCC 2 cut(s) 250, 326
CseI GACGC 1 cut(s) 264
CviAII CATG 1 cut(s) 192
CviJI RGCY 9 cut(s) 26, 54, 185, 269, 300, 328, 340, 381, 387
CviKI_1 RGCY 9 cut(s) 26, 54, 185, 269, 300, 328, 340, 381, 387
Ecl136II GAGCTC 1 cut(s) 185
Eco130I CCWWGG 1 cut(s) 382
Eco24I GRGCYC 2 cut(s) 187, 271
Eco47I GGWCC 1 cut(s) 250
Eco53kI GAGCTC 1 cut(s) 185
EcoICRI GAGCTC 1 cut(s) 185
EcoRII CCWGG 1 cut(s) 76
EcoT14I CCWWGG 1 cut(s) 382
EcoT38I GRGCYC 2 cut(s) 187, 271
ErhI CCWWGG 1 cut(s) 382
FaeI CATG 1 cut(s) 195
FaiI YATR 2 cut(s) 111, 193
FatI CATG 1 cut(s) 191
FauI CCCGC 4 cut(s) 236, 289, 304, 317
Fnu4HI GCNGC 2 cut(s) 338, 372
FokI GGATG 2 cut(s) 178, 303
FriOI GRGCYC 2 cut(s) 187, 271
Fsp4HI GCNGC 2 cut(s) 338, 372
FspBI CTAG 2 cut(s) 383, 388
GluI GCNGC 2 cut(s) 338, 372
GsuI CTGGAG 1 cut(s) 99
HaeIII GGCC 2 cut(s) 328, 381
HgaI GACGC 1 cut(s) 264
Hin1II CATG 1 cut(s) 195
HphI GGTGA 1 cut(s) 110
Hpy166II GTNNAC 3 cut(s) 35, 101, 250
Hpy188I TCNGA 1 cut(s) 61
Hpy8I GTNNAC 3 cut(s) 35, 101, 250
Hpy99I CGWCG 1 cut(s) 258
HpyAV CCTTC 1 cut(s) 341
HpyCH4V TGCA 2 cut(s) 236, 275
HpyF10VI GCNNNNNNNGC 1 cut(s) 334
Hsp92II CATG 1 cut(s) 195
LpnPI CCDG 7 cut(s) 36, 63, 90, 198, 244, 302, 326
Lsp1109I GCAGC 1 cut(s) 383
MaeI CTAG 2 cut(s) 383, 388
MaeIII GTNAC 2 cut(s) 153, 173
MboII GAAGA 1 cut(s) 356
MhlI GDGCHC 2 cut(s) 187, 271
MluCI AATT 3 cut(s) 44, 117, 218
MmeI TCCRAC 1 cut(s) 143
MnlI CCTC 2 cut(s) 314, 339
MspR9I CCNGG 1 cut(s) 78
MvaI CCWGG 1 cut(s) 78
MwoI GCNNNNNNNGC 1 cut(s) 334
NlaIII CATG 1 cut(s) 195
NmeAIII GCCGAG 1 cut(s) 118
NmuCI GTSAC 1 cut(s) 173
PkrI GCNGC 2 cut(s) 339, 373
Psp124BI GAGCTC 1 cut(s) 187
Psp6I CCWGG 1 cut(s) 76
PspGI CCWGG 1 cut(s) 76
PspPI GGNCC 2 cut(s) 250, 326
SacI GAGCTC 1 cut(s) 187
SatI GCNGC 2 cut(s) 338, 372
Sau96I GGNCC 2 cut(s) 250, 326
ScrFI CCNGG 1 cut(s) 78
SduI GDGCHC 2 cut(s) 187, 271
SetI ASST 3 cut(s) 100, 187, 281
SinI GGWCC 1 cut(s) 250
Sse9I AATT 3 cut(s) 44, 117, 218
SsiI CCGC 6 cut(s) 243, 296, 306, 311, 324, 337
SspMI CTAG 2 cut(s) 383, 388
SstI GAGCTC 1 cut(s) 187
StyD4I CCNGG 1 cut(s) 76
StyI CCWWGG 1 cut(s) 382
TaqII GACCGA 2 cut(s) 177, 267
TasI AATT 3 cut(s) 44, 117, 218
TauI GCSGC 1 cut(s) 340
TscAI CASTG 1 cut(s) 365
TseFI GTSAC 1 cut(s) 173
TseI GCWGC 1 cut(s) 371
Tsp45I GTSAC 1 cut(s) 173
TspDTI ATGAA 1 cut(s) 217
TspRI CASTG 1 cut(s) 365
VpaK11BI GGWCC 1 cut(s) 250
XapI RAATTY 1 cut(s) 117
XmaJI CCTAGG 1 cut(s) 382
XspI CTAG 2 cut(s) 383, 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.