Rroxscaffold_1G00032180

K homology RNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0014821
Physical Location & Seq
Reverse (-)
45931088 .. 45934216
3129 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00032180.1

Sequence Viewer

Length: 315 bp
ATGGTTGGTGGGTTGATTGGTAGATGCGGCTCCAACATTTCAAGGATTAGAAATGAGTACGGCGCAATGATCAAGGTTTATGGTGGGAAAGGTGAACAAAAGCATAGGCAAATTCGGTTTTGTGGTAATGCTCGGCGGGGAAAGGAAAGTTGCGAAATTTGGATGGCGAGTGACCACCGAGCTCGGTCATGTAAGTTCACTACCTCTATAGGGATTGAGGTTCCAAGTCAAGCTCTGGTATGTTATTGTGGGTGGAATAAGATTCCAGCTAACATTAAGAAAACATTGAGAGAGATTGACGGTAAGTTCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1

Protein Analysis

104

Amino Acids

11.67

Weight (kDa)

9.88

Isoelectric Point (pI)

55.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_1 PF00013 1 - 43 4.6e-07 KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 27, 136
AcsI RAATTY 2 cut(s) 111, 156
AfaI GTAC 1 cut(s) 59
AfiI CCNNNNNNNGG 1 cut(s) 210
AgsI TTSAA 2 cut(s) 42, 310
AluBI AGCT 3 cut(s) 182, 233, 269
AluI AGCT 3 cut(s) 182, 233, 269
Alw21I GWGCWC 1 cut(s) 184
ApoI RAATTY 2 cut(s) 111, 156
AspLEI GCGC 1 cut(s) 65
AsuHPI GGTGA 1 cut(s) 104
BanII GRGCYC 1 cut(s) 184
Bbv12I GWGCWC 1 cut(s) 184
BccI CCATC 1 cut(s) 157
BceAI ACGGC 1 cut(s) 76
BclI TGATCA 1 cut(s) 69
BfmI CTRYAG 1 cut(s) 207
BisI GCNGC 1 cut(s) 28
BlsI GCNGC 1 cut(s) 29
BmiI GGNNCC 2 cut(s) 31, 222
BmsI GCATC 1 cut(s) 14
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse3DI GCAATG 1 cut(s) 72
BseGI GGATG 1 cut(s) 168
BseLI CCNNNNNNNGG 1 cut(s) 210
BseMI GCAATG 1 cut(s) 72
BsiHKAI GWGCWC 1 cut(s) 184
BslI CCNNNNNNNGG 1 cut(s) 210
Bsp1286I GDGCHC 1 cut(s) 184
Bsp143I GATC 1 cut(s) 69
BspACI CCGC 2 cut(s) 27, 136
BspLI GGNNCC 2 cut(s) 31, 222
BsrDI GCAATG 1 cut(s) 72
BssMI GATC 1 cut(s) 69
Bst4CI ACNGT 1 cut(s) 302
BstF5I GGATG 1 cut(s) 168
BstHHI GCGC 1 cut(s) 65
BstKTI GATC 1 cut(s) 72
BstMBI GATC 1 cut(s) 69
BstSFI CTRYAG 1 cut(s) 207
BtsCI GGATG 1 cut(s) 168
CfoI GCGC 1 cut(s) 65
Csp6I GTAC 1 cut(s) 58
CviAII CATG 1 cut(s) 189
CviJI RGCY 4 cut(s) 30, 182, 233, 269
CviKI_1 RGCY 4 cut(s) 30, 182, 233, 269
CviQI GTAC 1 cut(s) 58
DpnI GATC 1 cut(s) 71
DpnII GATC 1 cut(s) 69
Ecl136II GAGCTC 1 cut(s) 182
Eco24I GRGCYC 1 cut(s) 184
Eco53kI GAGCTC 1 cut(s) 182
EcoICRI GAGCTC 1 cut(s) 182
EcoT38I GRGCYC 1 cut(s) 184
FaeI CATG 1 cut(s) 192
FaiI YATR 5 cut(s) 81, 105, 190, 209, 241
FatI CATG 1 cut(s) 188
FauI CCCGC 1 cut(s) 129
FbaI TGATCA 1 cut(s) 69
Fnu4HI GCNGC 1 cut(s) 28
FokI GGATG 1 cut(s) 175
FriOI GRGCYC 1 cut(s) 184
Fsp4HI GCNGC 1 cut(s) 28
GlaI GCGC 1 cut(s) 64
GluI GCNGC 1 cut(s) 28
HhaI GCGC 1 cut(s) 65
Hin1II CATG 1 cut(s) 192
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HinfI GANTC 1 cut(s) 262
HphI GGTGA 1 cut(s) 104
Hpy166II GTNNAC 2 cut(s) 95, 198
Hpy8I GTNNAC 2 cut(s) 95, 198
HpyCH4III ACNGT 1 cut(s) 302
Hsp92II CATG 1 cut(s) 192
HspAI GCGC 1 cut(s) 63
Ksp22I TGATCA 1 cut(s) 69
Kzo9I GATC 1 cut(s) 69
LmnI GCTCC 1 cut(s) 35
LpnPI CCDG 2 cut(s) 221, 279
LweI GCATC 1 cut(s) 14
MaeIII GTNAC 1 cut(s) 170
MalI GATC 1 cut(s) 71
MboI GATC 1 cut(s) 69
MhlI GDGCHC 1 cut(s) 184
MluCI AATT 2 cut(s) 111, 156
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 2 cut(s) 211, 214
MseI TTAA 1 cut(s) 276
NdeII GATC 1 cut(s) 69
NlaIII CATG 1 cut(s) 192
NlaIV GGNNCC 2 cut(s) 31, 222
NmeAIII GCCGAG 1 cut(s) 112
NmuCI GTSAC 1 cut(s) 170
PfeI GAWTC 1 cut(s) 262
PkrI GCNGC 1 cut(s) 29
Psp124BI GAGCTC 1 cut(s) 184
PspN4I GGNNCC 2 cut(s) 31, 222
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
SacI GAGCTC 1 cut(s) 184
SaqAI TTAA 1 cut(s) 276
SatI GCNGC 1 cut(s) 28
Sau3AI GATC 1 cut(s) 69
SduI GDGCHC 1 cut(s) 184
SetI ASST 7 cut(s) 78, 94, 184, 206, 222, 235, 271
SfaNI GCATC 1 cut(s) 14
SfcI CTRYAG 1 cut(s) 207
Sse9I AATT 2 cut(s) 111, 156
SsiI CCGC 2 cut(s) 27, 136
SstI GAGCTC 1 cut(s) 184
TaaI ACNGT 1 cut(s) 302
TaqII GACCGA 1 cut(s) 174
TasI AATT 2 cut(s) 111, 156
TauI GCSGC 1 cut(s) 30
TfiI GAWTC 1 cut(s) 262
Tru1I TTAA 1 cut(s) 276
Tru9I TTAA 1 cut(s) 276
TseFI GTSAC 1 cut(s) 170
Tsp45I GTSAC 1 cut(s) 170
XapI RAATTY 2 cut(s) 111, 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.