Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0014821

Physical Location & Seq

Genomic Coordinates Reverse (-)

16361466 .. 16366501

Gene Structure 5036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG093900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGTGTCTGTTGTAACTAATATGGTCAAAACTAGTAGATCCATGAGATGCTTTGTCAAAGGGTCAGCCAATAGTCCATTTTTACAATTTTCTGGCTATTCCGAATGTAATAATGACCCCGGAGATGGTGGTGGGAAAGGTGAACAAAAGCATAGACAAATTCAATTTTGTGGTAATGTTCTGCAGGAAAGGAAAGTTACTGAGCTGGATGACAGAGTGACCACTGTGCTCGGTCATGAATGGGAGCAGTGGAGGATTTTTGGAGGGCTTGAGGTGAGCCATGGAAGCAGCAGTGGCAGGGATCGAGGACGGGGCCGTGGACGTCGTGCTCTAATTACTGAAAAAGAGCCTGTGCATCATGCGACTGAATCTGAACCCTGCACATCTCTTCAGCAGAGGAGCAAACCTAATATAAACCCTGCTATGGCGGTGGACGATGTTTCTGAGTCAAACCAGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

153

Amino Acids

17.01

Weight (kDa)

7.73

Isoelectric Point (pI)

50.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014821)

Species	Orthologous Gene IDs
malus_domestica	MD07G1101300.v1.1
rosa_chinensis	RchiOBHm_Chr2g0136151
rosa_laevigata	RLG00000019700
rosa_multiflora	Rmu_sc0002070.1_g000018 Rmu_sc0010188.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032180 Rroxscaffold_2G00114000 Rroxscaffold_2G00149490 Rroxscaffold_3G00257240 Rroxscaffold_5G00344950 Rroxscaffold_5G00350550 Rroxscaffold_6G00396420
rosa_samantha	Rh1AG093900 Rh1DG198000 Rh2BG403000 Rh2BG403100 Rh2CG371500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	325
AciI	CCGC	1 cut(s)	428
AclWI	GGATC	2 cut(s)	33, 309
AcsI	RAATTY	1 cut(s)	159
AcuI	CTGAAG	1 cut(s)	374
AcyI	GRCGYC	1 cut(s)	322
AfiI	CCNNNNNNNGG	2 cut(s)	125, 424
AgsI	TTSAA	1 cut(s)	164
AhlI	ACTAGT	1 cut(s)	32
AluBI	AGCT	1 cut(s)	205
AluI	AGCT	1 cut(s)	205
Alw21I	GWGCWC	2 cut(s)	231, 331
AlwI	GGATC	2 cut(s)	33, 309
AoxI	GGCC	1 cut(s)	313
ApeKI	GCWGC	1 cut(s)	288
ApoI	RAATTY	1 cut(s)	159
AspS9I	GGNCC	1 cut(s)	313
AsuC2I	CCSGG	1 cut(s)	120
AsuHPI	GGTGA	2 cut(s)	152, 286
Bbv12I	GWGCWC	2 cut(s)	231, 331
BbvI	GCAGC	1 cut(s)	300
BccI	CCATC	1 cut(s)	119
BceAI	ACGGC	1 cut(s)	300
BcnI	CCSGG	1 cut(s)	120
BcuI	ACTAGT	1 cut(s)	32
BfaI	CTAG	1 cut(s)	33
BfmI	CTRYAG	1 cut(s)	182
BisI	GCNGC	1 cut(s)	289
BlsI	GCNGC	1 cut(s)	290
Bme1390I	CCNGG	1 cut(s)	120
BmgT120I	GGNCC	1 cut(s)	313
BmiI	GGNNCC	1 cut(s)	314
BmrFI	CCNGG	1 cut(s)	120
BmsI	GCATC	2 cut(s)	38, 364
BpuEI	CTTGAG	1 cut(s)	290
BpuMI	CCSGG	1 cut(s)	120
BsaHI	GRCGYC	1 cut(s)	322
BsaJI	CCNNGG	3 cut(s)	118, 280, 316
Bsc4I	CCNNNNNNNGG	2 cut(s)	125, 424
Bse1I	ACTGG	1 cut(s)	454
BseDI	CCNNGG	3 cut(s)	118, 280, 316
BseGI	GGATG	1 cut(s)	214
BseLI	CCNNNNNNNGG	2 cut(s)	125, 424
BseMII	CTCAG	2 cut(s)	192, 435
BseNI	ACTGG	1 cut(s)	454
BseRI	GAGGAG	1 cut(s)	412
BseXI	GCAGC	1 cut(s)	300
BsgI	GTGCAG	1 cut(s)	364
BshFI	GGCC	1 cut(s)	315
BsiHKAI	GWGCWC	2 cut(s)	231, 331
BsiSI	CCGG	1 cut(s)	120
BslI	CCNNNNNNNGG	2 cut(s)	125, 424
BsnI	GGCC	1 cut(s)	315
Bsp1286I	GDGCHC	2 cut(s)	231, 331
Bsp143I	GATC	2 cut(s)	38, 301
Bsp19I	CCATGG	1 cut(s)	280
BspACI	CCGC	1 cut(s)	428
BspANI	GGCC	1 cut(s)	315
BspCNI	CTCAG	2 cut(s)	193, 436
BspHI	TCATGA	1 cut(s)	235
BspLI	GGNNCC	1 cut(s)	314
BspMAI	CTGCAG	1 cut(s)	186
BspPI	GGATC	2 cut(s)	33, 309
BsrI	ACTGG	1 cut(s)	454
BssECI	CCNNGG	3 cut(s)	118, 280, 316
BssMI	GATC	2 cut(s)	38, 301
BssNI	GRCGYC	1 cut(s)	322
BssT1I	CCWWGG	1 cut(s)	280
Bst4CI	ACNGT	1 cut(s)	226
Bst6I	CTCTTC	1 cut(s)	393
BstACI	GRCGYC	1 cut(s)	322
BstDEI	CTNAG	2 cut(s)	201, 444
BstDSI	CCRYGG	2 cut(s)	280, 316
BstF5I	GGATG	1 cut(s)	214
BstKTI	GATC	2 cut(s)	41, 304
BstMBI	GATC	2 cut(s)	38, 301
BstMWI	GCNNNNNNNGC	2 cut(s)	285, 294
BstSCI	CCNGG	1 cut(s)	118
BstSFI	CTRYAG	1 cut(s)	182
BstV1I	GCAGC	1 cut(s)	300
BstX2I	RGATCY	1 cut(s)	38
BstYI	RGATCY	1 cut(s)	38
BsuRI	GGCC	1 cut(s)	315
BtgI	CCRYGG	2 cut(s)	280, 316
BtsCI	GGATG	1 cut(s)	214
BtsI	GCAGTG	2 cut(s)	254, 298
BtsIMutI	CAGTG	3 cut(s)	222, 254, 298
CciI	TCATGA	1 cut(s)	235
Cfr13I	GGNCC	1 cut(s)	313
CviAII	CATG	4 cut(s)	43, 236, 281, 359
CviJI	RGCY	7 cut(s)	68, 96, 205, 268, 279, 315, 349
CviKI_1	RGCY	7 cut(s)	68, 96, 205, 268, 279, 315, 349
DdeI	CTNAG	2 cut(s)	201, 444
DpnI	GATC	2 cut(s)	40, 303
DpnII	GATC	2 cut(s)	38, 301
Eam1104I	CTCTTC	1 cut(s)	393
EarI	CTCTTC	1 cut(s)	393
Eco130I	CCWWGG	1 cut(s)	280
Eco57I	CTGAAG	1 cut(s)	374
EcoT14I	CCWWGG	1 cut(s)	280
ErhI	CCWWGG	1 cut(s)	280
FaeI	CATG	4 cut(s)	46, 239, 284, 362
FaiI	YATR	8 cut(s)	23, 44, 153, 237, 282, 360, 413, 425
FatI	CATG	4 cut(s)	42, 235, 280, 358
Fnu4HI	GCNGC	1 cut(s)	289
FokI	GGATG	1 cut(s)	221
Fsp4HI	GCNGC	1 cut(s)	289
FspBI	CTAG	1 cut(s)	33
GluI	GCNGC	1 cut(s)	289
HaeIII	GGCC	1 cut(s)	315
HapII	CCGG	1 cut(s)	120
Hin1I	GRCGYC	1 cut(s)	322
Hin1II	CATG	4 cut(s)	46, 239, 284, 362
HinfI	GANTC	2 cut(s)	368, 446
HpaII	CCGG	1 cut(s)	120
HphI	GGTGA	2 cut(s)	152, 286
Hpy166II	GTNNAC	3 cut(s)	143, 320, 433
Hpy188I	TCNGA	3 cut(s)	103, 373, 445
Hpy188III	TCNNGA	1 cut(s)	236
Hpy8I	GTNNAC	3 cut(s)	143, 320, 433
Hpy99I	CGWCG	1 cut(s)	327
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4IV	ACGT	1 cut(s)	322
HpyCH4V	TGCA	3 cut(s)	184, 355, 381
HpyF10VI	GCNNNNNNNGC	2 cut(s)	285, 294
HpyF3I	CTNAG	2 cut(s)	201, 444
HpySE526I	ACGT	1 cut(s)	322
Hsp92I	GRCGYC	1 cut(s)	322
Hsp92II	CATG	4 cut(s)	46, 239, 284, 362
Kzo9I	GATC	2 cut(s)	38, 301
LmnI	GCTCC	2 cut(s)	244, 399
LpnPI	CCDG	8 cut(s)	78, 133, 170, 191, 283, 363, 391, 432
Lsp1109I	GCAGC	1 cut(s)	300
LweI	GCATC	2 cut(s)	38, 364
MaeI	CTAG	1 cut(s)	33
MaeII	ACGT	1 cut(s)	322
MaeIII	GTNAC	3 cut(s)	13, 196, 217
MalI	GATC	2 cut(s)	40, 303
MboI	GATC	2 cut(s)	38, 301
MboII	GAAGA	1 cut(s)	380
MflI	RGATCY	1 cut(s)	38
MhlI	GDGCHC	2 cut(s)	231, 331
MluCI	AATT	4 cut(s)	86, 159, 164, 333
MlyI	GAGTC	1 cut(s)	455
MnlI	CCTC	5 cut(s)	246, 257, 265, 299, 390
MspI	CCGG	1 cut(s)	120
MspR9I	CCNGG	1 cut(s)	120
MwoI	GCNNNNNNNGC	2 cut(s)	285, 294
NciI	CCSGG	1 cut(s)	120
NcoI	CCATGG	1 cut(s)	280
NdeII	GATC	2 cut(s)	38, 301
NlaIII	CATG	4 cut(s)	46, 239, 284, 362
NlaIV	GGNNCC	1 cut(s)	314
NmuCI	GTSAC	1 cut(s)	217
PagI	TCATGA	1 cut(s)	235
PfeI	GAWTC	1 cut(s)	368
PkrI	GCNGC	1 cut(s)	290
PleI	GAGTC	1 cut(s)	454
PpsI	GAGTC	1 cut(s)	454
PspN4I	GGNNCC	1 cut(s)	314
PspPI	GGNCC	1 cut(s)	313
PstI	CTGCAG	1 cut(s)	186
PsuI	RGATCY	1 cut(s)	38
SatI	GCNGC	1 cut(s)	289
Sau3AI	GATC	2 cut(s)	38, 301
Sau96I	GGNCC	1 cut(s)	313
SchI	GAGTC	1 cut(s)	455
ScrFI	CCNGG	1 cut(s)	120
SduI	GDGCHC	2 cut(s)	231, 331
SetI	ASST	5 cut(s)	142, 207, 276, 325, 409
SfaNI	GCATC	2 cut(s)	38, 364
SfcI	CTRYAG	1 cut(s)	182
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
SpeI	ACTAGT	1 cut(s)	32
Sse9I	AATT	4 cut(s)	86, 159, 164, 333
SsiI	CCGC	1 cut(s)	428
SspMI	CTAG	1 cut(s)	33
StyD4I	CCNGG	1 cut(s)	118
StyI	CCWWGG	1 cut(s)	280
TaaI	ACNGT	1 cut(s)	226
TaiI	ACGT	1 cut(s)	325
TaqI	TCGA	1 cut(s)	304
TaqII	GACCGA	1 cut(s)	221
TasI	AATT	4 cut(s)	86, 159, 164, 333
TfiI	GAWTC	1 cut(s)	368
TscAI	CASTG	3 cut(s)	229, 254, 298
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	1 cut(s)	288
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	1 cut(s)	252
TspRI	CASTG	3 cut(s)	229, 254, 298
XapI	RAATTY	1 cut(s)	159
XspI	CTAG	1 cut(s)	33
ZraI	GACGTC	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.